mRNA_P-wetherbeei_contig5788.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA) HSP 1 Score: 115 bits (287), Expect = 4.610e-28 Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1
Query: 154 SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAG 429
S+F RLG KA GT V +SNLNFD+M D+++LF +GE+ +VK+DRSGRS+GEA V FA+R+DA++A+++ HMRTLD TPMH+KL GAG
Sbjct: 83 SIFTRLGGKATPSAGTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGAG 176
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE) HSP 1 Score: 109 bits (273), Expect = 8.360e-26 Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 70 SGPVRRNAPASRQARAAVAPYAQEPRKPS--VFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHA 444
SGP+RR SR AR APY Q P +PS V RLG V GT+V + LNFDVM D+++LF +G++L K+ YDR+GRS G AVV F +R DA AV + H RTLD TPMH++++ G A +
Sbjct: 67 SGPMRRQG-ISRAARETAAPY-QRPTRPSDGVHSRLGDPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGAAES 191
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A7S2G076_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G076_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.530e-22 Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 154 SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLG 423
S+ RLGAK + GTKV++ NL F+V++ +L++LF +GE+LD KVKYDR+GRSLGE +TFA+++DAV AV+ H R LD PM +KL G
Sbjct: 118 SILSRLGAKMSDASGTKVTVGNLGFEVLEAELKELFQTVGELLDAKVKYDRTGRSLGEGEITFARQSDAVAAVKTFHARALDGQPMQVKLSG 209
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI) HSP 1 Score: 100 bits (248), Expect = 9.380e-21 Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 70 SGPVRRNAPASRQARAAVAPYAQEPRKPS--VFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAG 429
SGP+RR SR AR APY Q P +P+ V RLG V GT+V + LNFDVM D+++LF +G++L K+ +DR+GRS G A+V F +R DA AV + H RTLD TPM ++++ G
Sbjct: 67 SGPMRRQG-ISRVARETAAPY-QRPTRPADGVHSRLGDPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGG 186
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A024UUL3_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUL3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.210e-20 Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 1
Query: 73 GPVRRNAPASRQARAAVAPYAQEP--------------RKPSVFLRLGAKAVE---GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANGSGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAI 564
GPVRRN P + + R PY+++ ++ S+ RLG + G K+ + NL FDV+++DL++LF +G+V ++ YD+SGRS G A V FA+RNDA +AV+ R LDD + + L A + SGGG G R + ++ R+S G NVR+G+FGTA+
Sbjct: 36 GPVRRNRPNTGRGRRNAEPYSRKNDSDDDMGDSSGKSGKRASILSRLGGRVSNDDAGHKIFVQNLKFDVLEDDLKELFGTVGKVTKAEIVYDKSGRSKGLARVWFARRNDAEQAVKRYDGRLLDDQALKIALDDAPS------SGGGYGNPR----NTSSSQRRSNNDGNNVRQGVFGTAL 206
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A1V9Y6Q6_9STRA (RRM domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6Q6_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 5.540e-18 Identity = 65/193 (33.68%), Postives = 102/193 (52.85%), Query Frame = 1
Query: 49 KPKQQASSGPVRRNAPASRQARAAVAPYA-----------QEPRKP------SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANGSGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAIAG 570
K ++++ +GPVRRN P + + R PY+ +E KP S+ R+G KA E G KV +SNL FDV+++D+++LF+ +G+V+ ++ YDRSGRS G+A V F+ + A AV + RTLD+ M + L N++++N + NVR G+FGTA+ G
Sbjct: 24 KGRKESGAGPVRRNRPNAGRGRRDGTPYSRKGDDGDVDMDEESNKPPRGGRTSILSRIGGKAQEDIGHKVFVSNLKFDVLEDDIKELFSTVGKVVKHEIIYDRSGRSKGQARVWFSNKRAAEAAVTKYDGRTLDNQAMKITLDDGNNQSNSN----------------------KKQDSNNVRSGLFGTALQG 194
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A836CLS9_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS9_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.480e-16 Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 148 KPSVFLRLGA----KAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLG 423
K S+ RLG K V GT+V SNLN DV D++++ +G+V D++++YD +GRS G+A+VT+A+ DA +AV LH+RTLD TPM +K+LG
Sbjct: 123 KSSILSRLGTQRDTKKVFGTQVGFSNLNHDVDLEDIKEVAATVGQVNDVEMQYDSTGRSEGKAIVTYARYLDAQEAVASLHLRTLDGTPMQVKMLG 218
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A024GSE9_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSE9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.860e-16 Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 127 PYAQEPRKPSVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 417
P +E +K S+ RLG GTK+ + NL FD++++D+ +LFN +G+V ++ YDRSGRS G A V F +R+DA KA+++ RTLD PM + L
Sbjct: 106 PVPRENKKGSILSRLGGPETSNTGTKIFVKNLKFDILEDDVRELFNTVGQVTKAEIVYDRSGRSKGVARVWFGRRSDAEKAIKQYDGRTLDGQPMQIAL 204
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: F0WLE1_9STRA (Uncharacterized protein AlNc14C143G7329 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLE1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.060e-16 Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 127 PYAQEPRKPSVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 417
P ++E +K S+ RLG GTK+ + NL FD++++D+ +LF +G+V ++ YDRSGRS G A V F +R+DA KA+++ RTLD PM + L
Sbjct: 106 PISKESKKGSILSRLGGPETSNTGTKIFVKNLKFDILEDDVRELFGTVGQVTKAEIVYDRSGRSKGVARVWFGRRSDAEKAIKQYDGRTLDGQPMQIAL 204
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: G4YGH8_PHYSP (RRM domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YGH8_PHYSP) HSP 1 Score: 82.8 bits (203), Expect = 7.960e-16 Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 154 SVFLRLGAK--AVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 417
S+ RLG K A GTK+ + NL FD+++ ++ +LF +GEV ++ YDRSGRS G A V FA+R+DA KA+++ RTLD PM + L
Sbjct: 38 SILSRLGGKDAASPGTKILVKNLKFDILEEEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQISL 127 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5788.1.1 >prot_P-wetherbeei_contig5788.1.1 ID=prot_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp PVQQQKATPRPASAQSKPKQQASSGPVRRNAPASRQARAAVAPYAQEPRKback to top mRNA from alignment at P-wetherbeei_contig5788:2..831- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5788.1.1 ID=mRNA_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=830bp|location=Sequence derived from alignment at P-wetherbeei_contig5788:2..831- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5788:2..831- >mRNA_P-wetherbeei_contig5788.1.1 ID=mRNA_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig5788:2..831- (Phaeothamnion wetherbeei SAG_119_79)back to top |