mRNA_P-wetherbeei_contig5788.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5788.1.1
Unique NamemRNA_P-wetherbeei_contig5788.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.610e-28
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  154 SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAG 429
            S+F RLG KA    GT V +SNLNFD+M  D+++LF  +GE+   +VK+DRSGRS+GEA V FA+R+DA++A+++ HMRTLD TPMH+KL GAG
Sbjct:   83 SIFTRLGGKATPSAGTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGAG 176          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.360e-26
Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   70 SGPVRRNAPASRQARAAVAPYAQEPRKPS--VFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHA 444
            SGP+RR    SR AR   APY Q P +PS  V  RLG   V GT+V +  LNFDVM  D+++LF  +G++L  K+ YDR+GRS G AVV F +R DA  AV + H RTLD TPMH++++  G  A +
Sbjct:   67 SGPMRRQG-ISRAARETAAPY-QRPTRPSDGVHSRLGDPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGAAES 191          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A7S2G076_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G076_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.530e-22
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  154 SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLG 423
            S+  RLGAK  +  GTKV++ NL F+V++ +L++LF  +GE+LD KVKYDR+GRSLGE  +TFA+++DAV AV+  H R LD  PM +KL G
Sbjct:  118 SILSRLGAKMSDASGTKVTVGNLGFEVLEAELKELFQTVGELLDAKVKYDRTGRSLGEGEITFARQSDAVAAVKTFHARALDGQPMQVKLSG 209          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 9.380e-21
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   70 SGPVRRNAPASRQARAAVAPYAQEPRKPS--VFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAG 429
            SGP+RR    SR AR   APY Q P +P+  V  RLG   V GT+V +  LNFDVM  D+++LF  +G++L  K+ +DR+GRS G A+V F +R DA  AV + H RTLD TPM ++++  G
Sbjct:   67 SGPMRRQG-ISRVARETAAPY-QRPTRPADGVHSRLGDPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGG 186          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A024UUL3_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUL3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.210e-20
Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   73 GPVRRNAPASRQARAAVAPYAQEP--------------RKPSVFLRLGAKAVE---GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANGSGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAI 564
            GPVRRN P + + R    PY+++               ++ S+  RLG +      G K+ + NL FDV+++DL++LF  +G+V   ++ YD+SGRS G A V FA+RNDA +AV+    R LDD  + + L  A +      SGGG G  R    + ++  R+S   G NVR+G+FGTA+
Sbjct:   36 GPVRRNRPNTGRGRRNAEPYSRKNDSDDDMGDSSGKSGKRASILSRLGGRVSNDDAGHKIFVQNLKFDVLEDDLKELFGTVGKVTKAEIVYDKSGRSKGLARVWFARRNDAEQAVKRYDGRLLDDQALKIALDDAPS------SGGGYGNPR----NTSSSQRRSNNDGNNVRQGVFGTAL 206          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A1V9Y6Q6_9STRA (RRM domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6Q6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.540e-18
Identity = 65/193 (33.68%), Postives = 102/193 (52.85%), Query Frame = 1
Query:   49 KPKQQASSGPVRRNAPASRQARAAVAPYA-----------QEPRKP------SVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANGSGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAIAG 570
            K ++++ +GPVRRN P + + R    PY+           +E  KP      S+  R+G KA E  G KV +SNL FDV+++D+++LF+ +G+V+  ++ YDRSGRS G+A V F+ +  A  AV +   RTLD+  M + L    N++++N                       +    NVR G+FGTA+ G
Sbjct:   24 KGRKESGAGPVRRNRPNAGRGRRDGTPYSRKGDDGDVDMDEESNKPPRGGRTSILSRIGGKAQEDIGHKVFVSNLKFDVLEDDIKELFSTVGKVVKHEIIYDRSGRSKGQARVWFSNKRAAEAAVTKYDGRTLDNQAMKITLDDGNNQSNSN----------------------KKQDSNNVRSGLFGTALQG 194          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A836CLS9_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.480e-16
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  148 KPSVFLRLGA----KAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLG 423
            K S+  RLG     K V GT+V  SNLN DV   D++++   +G+V D++++YD +GRS G+A+VT+A+  DA +AV  LH+RTLD TPM +K+LG
Sbjct:  123 KSSILSRLGTQRDTKKVFGTQVGFSNLNHDVDLEDIKEVAATVGQVNDVEMQYDSTGRSEGKAIVTYARYLDAQEAVASLHLRTLDGTPMQVKMLG 218          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: A0A024GSE9_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSE9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.860e-16
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  127 PYAQEPRKPSVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 417
            P  +E +K S+  RLG       GTK+ + NL FD++++D+ +LFN +G+V   ++ YDRSGRS G A V F +R+DA KA+++   RTLD  PM + L
Sbjct:  106 PVPRENKKGSILSRLGGPETSNTGTKIFVKNLKFDILEDDVRELFNTVGQVTKAEIVYDRSGRSKGVARVWFGRRSDAEKAIKQYDGRTLDGQPMQIAL 204          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: F0WLE1_9STRA (Uncharacterized protein AlNc14C143G7329 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLE1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.060e-16
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  127 PYAQEPRKPSVFLRLGAKAVE--GTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 417
            P ++E +K S+  RLG       GTK+ + NL FD++++D+ +LF  +G+V   ++ YDRSGRS G A V F +R+DA KA+++   RTLD  PM + L
Sbjct:  106 PISKESKKGSILSRLGGPETSNTGTKIFVKNLKFDILEDDVRELFGTVGQVTKAEIVYDRSGRSKGVARVWFGRRSDAEKAIKQYDGRTLDGQPMQIAL 204          
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Match: G4YGH8_PHYSP (RRM domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YGH8_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 7.960e-16
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  154 SVFLRLGAK--AVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDRSGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKL 417
            S+  RLG K  A  GTK+ + NL FD+++ ++ +LF  +GEV   ++ YDRSGRS G A V FA+R+DA KA+++   RTLD  PM + L
Sbjct:   38 SILSRLGGKDAASPGTKILVKNLKFDILEEEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQISL 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5788.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V561_9STRA4.610e-2858.51Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KWS3_9PHAE8.360e-2649.61RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2G076_9STRA3.530e-2254.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LLT1_ECTSI9.380e-2147.54RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A024UUL3_9STRA1.210e-2037.02RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A1V9Y6Q6_9STRA5.540e-1833.68RRM domain-containing protein n=1 Tax=Thraustothec... [more]
A0A836CLS9_9STRA1.480e-1647.92RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024GSE9_9STRA1.860e-1643.43RRM domain-containing protein n=1 Tax=Albugo candi... [more]
F0WLE1_9STRA3.060e-1642.42Uncharacterized protein AlNc14C143G7329 n=1 Tax=Al... [more]
G4YGH8_PHYSP7.960e-1646.67RRM domain-containing protein n=3 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5788contigP-wetherbeei_contig5788:2..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLT1
Preferred nameYRA1
PFAMsFoP_duplication,RRM_1
Model size682
Max annot lvl2759|Eukaryota
KEGG koko:K12881
KEGG Pathwayko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG ModuleM00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000346,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0030234,GO:0031503,GO:0032780,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0042030,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0050790,GO:0050896,GO:0051028,GO:0051095,GO:0051097,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051336,GO:0051346,GO:0051641,GO:0051649,GO:0051716,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1902280,GO:1902281,GO:1990119
Exons2
Evalue1.54e-21
EggNOG OGsKOG0533@1|root,KOG0533@2759|Eukaryota
DescriptionmRNA transport
Cds size681
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.837995-CDS-P-wetherbeei_contig5788:2..3981683186857.837995-CDS-P-wetherbeei_contig5788:2..398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5788 3..398 -
1683186857.8506885-CDS-P-wetherbeei_contig5788:546..8311683186857.8506885-CDS-P-wetherbeei_contig5788:546..831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5788 547..831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5788.1.1prot_P-wetherbeei_contig5788.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5788 3..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5788.1.1

>prot_P-wetherbeei_contig5788.1.1 ID=prot_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
PVQQQKATPRPASAQSKPKQQASSGPVRRNAPASRQARAAVAPYAQEPRK
PSVFLRLGAKAVEGTKVSISNLNFDVMQNDLEDLFNELGEVLDLKVKYDR
SGRSLGEAVVTFAQRNDAVKAVRELHMRTLDDTPMHLKLLGAGNEAHANG
SGGGVGGNRARGYSDAADDRQSRPSGANVREGIFGTAIAGGGGGDGGGGR
GNGGRGGGGAHTRPSDDVHFSVTLDGK
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mRNA from alignment at P-wetherbeei_contig5788:2..831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5788.1.1 ID=mRNA_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=830bp|location=Sequence derived from alignment at P-wetherbeei_contig5788:2..831- (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGCAACAGCAGAAAGCAACACCGCGGCCTGCATCGGCACAAAGCAA ACCGAAGCAGCAGGCATCGAGCGGTCCAGTGCGTAGAAACGCCCCCGCGA GCCGACAGGCAAGAGCCGCCGTGGCGCCGTATGCGCAGGAGCCTCGCAAG CCCTCGGTTTTCCTGCGCCTCGGCGCCAAGGCGGTGGAGGGAACGAAAGT GTCGATCAGCAACCTGAATTTTGACGTCATGCAGAACGACCTGGAGGACC TCTTCAACGAGCTCGGAGAAGTCTTGGACCTCAAGGTGCGCACCTTTATT TTGCGTCTGTTTACGCAAGGACTCTGTGTTTCCGCAATTACAGATCATCG CATTCTTTTTCGTAATAACTGCCCTCTTCCAGTTGTTGCCGCCTAACACG ACCAAGGCCGTTTCTTTTTATTGATCGAAGCAGGTCAAGTATGACCGCAG CGGCCGCTCCCTCGGCGAAGCTGTCGTGACGTTCGCCCAGCGAAACGATG CCGTGAAGGCGGTGCGGGAGCTGCACATGCGGACGCTTGACGACACCCCC ATGCACCTCAAGCTGCTTGGCGCCGGCAACGAGGCGCATGCTAATGGCAG CGGCGGTGGCGTCGGCGGCAACCGCGCCCGGGGCTACAGCGATGCGGCGG ACGACAGGCAGTCGCGCCCCTCCGGCGCCAACGTGCGCGAGGGCATCTTT GGCACCGCCATCGCCGGCGGCGGCGGGGGAGATGGCGGTGGTGGCCGCGG CAATGGCGGGAGAGGTGGCGGCGGCGCCCACACCCGCCCGTCCGACGATG TGCACTTCTCGGTGACGCTGGACGGCAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5788:2..831-

>mRNA_P-wetherbeei_contig5788.1.1 ID=mRNA_P-wetherbeei_contig5788.1.1|Name=mRNA_P-wetherbeei_contig5788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig5788:2..831- (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGCAACAGCAGAAAGCAACACCGCGGCCTGCATCGGCACAAAGCAA
ACCGAAGCAGCAGGCATCGAGCGGTCCAGTGCGTAGAAACGCCCCCGCGA
GCCGACAGGCAAGAGCCGCCGTGGCGCCGTATGCGCAGGAGCCTCGCAAG
CCCTCGGTTTTCCTGCGCCTCGGCGCCAAGGCGGTGGAGGGAACGAAAGT
GTCGATCAGCAACCTGAATTTTGACGTCATGCAGAACGACCTGGAGGACC
TCTTCAACGAGCTCGGAGAAGTCTTGGACCTCAAGGTCAAGTATGACCGC
AGCGGCCGCTCCCTCGGCGAAGCTGTCGTGACGTTCGCCCAGCGAAACGA
TGCCGTGAAGGCGGTGCGGGAGCTGCACATGCGGACGCTTGACGACACCC
CCATGCACCTCAAGCTGCTTGGCGCCGGCAACGAGGCGCATGCTAATGGC
AGCGGCGGTGGCGTCGGCGGCAACCGCGCCCGGGGCTACAGCGATGCGGC
GGACGACAGGCAGTCGCGCCCCTCCGGCGCCAACGTGCGCGAGGGCATCT
TTGGCACCGCCATCGCCGGCGGCGGCGGGGGAGATGGCGGTGGTGGCCGC
GGCAATGGCGGGAGAGGTGGCGGCGGCGCCCACACCCGCCCGTCCGACGA
TGTGCACTTCTCGGTGACGCTGGACGGCAAG
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