mRNA_P-wetherbeei_contig57872.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57872.1.1
Unique NamemRNA_P-wetherbeei_contig57872.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: A0A0S8AZN2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AZN2_9PROT)

HSP 1 Score: 222 bits (565), Expect = 1.540e-70
Identity = 111/168 (66.07%), Postives = 132/168 (78.57%), Query Frame = 1
Query:    1 RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAEVDAP 504
            RELVL R  +RNALDL TTERL+ ++ A   D    V+LL G+G GFCAGSDVKEMA   ++ RL IA+RKA+LM+ LA L+ PVV AVHGFALGGG MLAIGCDVV+TA+ A WRLPEVELGFFPPWG+EAL+ RV +ARAR LVWG  PL+G+EA +LGLA+   P
Sbjct:   10 RELVLDRPRLRNALDLETTERLLAALDALAQDDQAAVVLLHGEGTGFCAGSDVKEMARVDLETRLRIAERKALLMQRLARLECPVVAAVHGFALGGGLMLAIGCDVVITASHAVWRLPEVELGFFPPWGLEALLARVSMARARRLVWGEAPLSGTEAAQLGLADEAVP 177          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: UPI001813F1A2 (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI001813F1A2)

HSP 1 Score: 173 bits (438), Expect = 3.100e-51
Identity = 86/166 (51.81%), Postives = 115/166 (69.28%), Query Frame = 1
Query:    7 LVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAEVDAP 504
            L+L R + RNAL  A  + L H++AAA  D  +R ++L G    FCAGSD+KE+ G S+ +     +  A + R +A + +PVVCAV G+ALGGGF+LA+ CDVVVTATDA WRLPEV  G+ PPWG++AL+ RVG  RAR LVWG   + G+EA RLG+A++  P
Sbjct:   13 LMLDRPQRRNALGTAGIQALDHALAAADQDDGVRAIVLTGAPPAFCAGSDLKELGGLSIADMCAHEEITAAVARKIALMTKPVVCAVEGYALGGGFILAVSCDVVVTATDAKWRLPEVANGWLPPWGLQALLARVGPVRARMLVWGVEAIDGAEAHRLGVADLVTP 178          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: B1G5X3_PARG4 (1,4-dihydroxy-2-naphthoyl-CoA synthase n=2 Tax=Burkholderiaceae TaxID=119060 RepID=B1G5X3_PARG4)

HSP 1 Score: 165 bits (418), Expect = 3.150e-48
Identity = 81/164 (49.39%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAE 492
            R+LVL R + RNAL  A  E+L   +  A  D ++  ++L G    FCAGSD+KE+ G S+D         A + R +A L +PV+ AV GFALGGGF+LA+ CD+VV+A +A W LPEV  G+ PPWG++AL+ RVG  RAR LVWG  P+ G EA RLG+A+
Sbjct:   10 RQLVLDRPQRRNALSQALMEQLEQELRRAESDASVAAIVLSGAPPAFCAGSDLKELGGLSIDHMCEHELETARIARGIAGLSKPVIAAVEGFALGGGFILAVSCDLVVSAVNARWHLPEVPNGWLPPWGLQALIARVGAVRARMLVWGDEPIDGVEAHRLGVAD 173          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: UPI000485A111 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Paraburkholderia ferrariae TaxID=386056 RepID=UPI000485A111)

HSP 1 Score: 165 bits (417), Expect = 4.460e-48
Identity = 82/164 (50.00%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    1 RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAE 492
            R LVL R E RNAL   + ++L   +  A  DPA R ++L G    FCAGSD+KE+ G S++E     +  A + R +A + +PV+ AV G+ALGGGF+LA  CD+VVTA++A W LPEV  G+ PPWG++AL+ RVG  RAR LVWG  P+ G EA RLG+A+
Sbjct:   10 RHLVLDRPERRNALGAESIQQLARELEVADRDPAARAIVLSGAPPAFCAGSDLKELGGLSIEEMCDHERDTAQVGRYIAGMSKPVIAAVEGYALGGGFILATSCDIVVTASNARWHLPEVVNGWLPPWGLQALLARVGAVRARLLVWGDSPIDGKEAHRLGVAD 173          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: A0A0A1FFU2_9BURK (Enoyl-CoA hydratase n=2 Tax=Oxalobacteraceae TaxID=75682 RepID=A0A0A1FFU2_9BURK)

HSP 1 Score: 164 bits (415), Expect = 8.940e-48
Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    1 RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAE 492
            R L L+R   RNALD    E L  ++ AA  DPA+R ++L G    FC+GSD+KE++  S+ E        A + R++A L +PV+ AV GFALGGGF+LAI CDVVVTA++A W LPEV  G+ PPWG++AL+ RVG  RAR L W   P+ G+EA RLG+A+
Sbjct:   10 RHLTLNRPARRNALDSKAIEELKDALQAADRDPAVRAIVLSGAAPAFCSGSDLKELSTMSIQEMCDSELVTAEVARSIAGLSKPVIAAVEGFALGGGFVLAISCDVVVTASNARWHLPEVPNGWLPPWGLQALLARVGAVRARLLTWAADPIDGNEAHRLGVAD 173          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: A0A327KSV4_9HYPH (Enoyl-CoA hydratase n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KSV4_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 2.610e-47
Identity = 84/166 (50.60%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    7 LVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAEVDAP 504
            L+L R   RNAL       L  ++ AA  D  ++ ++L G    FCAGSD+KE+ G S+          A + R +A L +PVVCAV G+ALGGGF+LA+ CDVVVTA DA WRLPEV  G+ PPWG++AL+ RVG  RAR LVWG  P+ G EA RLG+A++ AP
Sbjct:   13 LMLDRPARRNALGTEGGRALDAALVAADRDETVKAIVLAGAPPAFCAGSDLKELGGLSIPAMCDHEAITAAVARRIALLAKPVVCAVEGYALGGGFILAVSCDVVVTAADATWRLPEVANGWLPPWGLQALIARVGPVRARMLVWGAEPIDGREAHRLGVADLLAP 178          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: A0A327KZ90_9HYPH (Enoyl-CoA hydratase n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KZ90_9HYPH)

HSP 1 Score: 162 bits (409), Expect = 7.390e-47
Identity = 84/166 (50.60%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    7 LVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAEVDAP 504
            L L R E RNAL     + L  ++A A  D A+R ++L G    FCAGSD+KE+ G S+ +        A + R +A L +PVV AV G+ALGGGF+LA+ CDVVVTA DA WRLPEV  G+ PPWG+ AL+ RVG  RAR LVWG   + G+EA RLG+A++  P
Sbjct:   13 LTLDRPERRNALGTDGIQALDRALATADRDDAVRAIVLTGAPPAFCAGSDLKELGGLSIPDMCAHEAVTAAVARQIALLSKPVVAAVEGYALGGGFILAVSCDVVVTAADAKWRLPEVANGWLPPWGLTALLARVGAVRARMLVWGVEAIDGTEAHRLGVADLLTP 178          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: A0A4Y8MHW1_9BURK (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Paraburkholderia dipogonis TaxID=1211383 RepID=A0A4Y8MHW1_9BURK)

HSP 1 Score: 161 bits (407), Expect = 1.440e-46
Identity = 79/165 (47.88%), Postives = 108/165 (65.45%), Query Frame = 1
Query:    1 RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAEV 495
            R+LVL R + RNAL      +L H +  A  DP++  ++L G    FCAGSD+KE+   S+D         A + R++A + +PV+ AV GFALGGGF+LA+ CD+VV+A++  W LPEV  G+ PPWG++ALV RVG  RAR LVW   P+ G EA RLG+A+V
Sbjct:   10 RQLVLDRPQRRNALGEELMRQLAHELERAERDPSVNAIVLSGAAPAFCAGSDLKELGTLSIDGMCQHELETARIARSIAGVPKPVIAAVEGFALGGGFILAVSCDLVVSASNVRWHLPEVPNGWLPPWGLQALVARVGAVRARMLVWADSPIDGVEAHRLGVADV 174          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: UPI001BD097EF (enoyl-CoA hydratase/isomerase family protein n=2 Tax=unclassified Chelatococcus TaxID=2638111 RepID=UPI001BD097EF)

HSP 1 Score: 161 bits (407), Expect = 1.960e-46
Identity = 82/166 (49.40%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    7 LVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAEVDAP 504
            L L+R E RNAL   T   L  ++  A  D A+  ++L G    FCAGSD+KE+   S+D         A + R +  L +PVV AV GFALGGGF+LA  CDVVVTA +A W LPEV  G+ PPWG+ ALV R+G  +AR L WG  P+ G+EALRLG+A+  AP
Sbjct:   23 LTLNRPERRNALGRETMRALAQALDVAESDQAVGAIVLTGAAPAFCAGSDLKELGRLSVDGMRRHEAETAAIARRIGVLSKPVVAAVEGFALGGGFILAASCDVVVTAENARWHLPEVPNGWLPPWGLGALVARIGPTKARLLTWGAEPIDGTEALRLGVADFSAP 188          
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Match: A0A149PC34_9BURK (Enoyl-CoA hydratase n=3 Tax=Paraburkholderia TaxID=1822464 RepID=A0A149PC34_9BURK)

HSP 1 Score: 160 bits (406), Expect = 2.350e-46
Identity = 80/164 (48.78%), Postives = 109/164 (66.46%), Query Frame = 1
Query:    1 RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAGSDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFMLAIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTHPLTGSEALRLGLAE 492
            R+L L+R E RNALD  +   L  ++  A  DP +R ++L G    FC+GSD+KE+A  S+ +        A + R++A + +PV+ AV GFALGGGF+LAI CD+VV+ATD  W LPEV  G+ PPWG++AL+ RVG  RAR L W   P+TG EA RLG+A+
Sbjct:   15 RQLSLNRPERRNALDGGSIAELEQALQQADRDPQVRAVVLLGAPPAFCSGSDLKELATMSIQQMCDSESDTARVARSIAAMSKPVIAAVEGFALGGGFVLAISCDIVVSATDVRWHLPEVPNGWLPPWGLQALLARVGPVRARLLTWAADPMTGVEAHRLGVAD 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57872.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8AZN2_9PROT1.540e-7066.07Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI001813F1A23.100e-5151.81Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
B1G5X3_PARG43.150e-4849.391,4-dihydroxy-2-naphthoyl-CoA synthase n=2 Tax=Bur... [more]
UPI000485A1114.460e-4850.00enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A0A1FFU2_9BURK8.940e-4850.61Enoyl-CoA hydratase n=2 Tax=Oxalobacteraceae TaxID... [more]
A0A327KSV4_9HYPH2.610e-4750.60Enoyl-CoA hydratase n=1 Tax=Rhodoplanes elegans Ta... [more]
A0A327KZ90_9HYPH7.390e-4750.60Enoyl-CoA hydratase n=1 Tax=Rhodoplanes roseus Tax... [more]
A0A4Y8MHW1_9BURK1.440e-4647.88Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
UPI001BD097EF1.960e-4649.40enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
A0A149PC34_9BURK2.350e-4648.78Enoyl-CoA hydratase n=3 Tax=Paraburkholderia TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57872contigP-wetherbeei_contig57872:3..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1218076.BAYB01000025_gene4394
PFAMsECH_1
Model size504
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.32e-49
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,1RDWE@1224|Proteobacteria,2W8XM@28216|Betaproteobacteria,1K7GY@119060|Burkholderiaceae
DescriptionEnoyl-CoA hydratase/isomerase
Cds size504
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.8069215-CDS-P-wetherbeei_contig57872:2..5061683186857.8069215-CDS-P-wetherbeei_contig57872:2..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57872 3..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57872.1.1prot_P-wetherbeei_contig57872.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57872 3..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57872.1.1

>prot_P-wetherbeei_contig57872.1.1 ID=prot_P-wetherbeei_contig57872.1.1|Name=mRNA_P-wetherbeei_contig57872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
RELVLSRNEVRNALDLATTERLIHSIAAARDDPAIRVLLLRGDGAGFCAG
SDVKEMAGASMDERLHIAQRKAMLMRALAELDRPVVCAVHGFALGGGFML
AIGCDVVVTATDAAWRLPEVELGFFPPWGIEALVRRVGIARARWLVWGTH
PLTGSEALRLGLAEVDAP
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mRNA from alignment at P-wetherbeei_contig57872:3..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57872.1.1 ID=mRNA_P-wetherbeei_contig57872.1.1|Name=mRNA_P-wetherbeei_contig57872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57872:3..506- (Phaeothamnion wetherbeei SAG_119_79)
CGTGAACTCGTCCTTTCCCGAAACGAAGTCCGCAACGCGCTGGACCTCGC CACCACCGAGCGGCTGATTCATTCGATTGCAGCGGCGCGCGACGACCCCG CGATCCGCGTACTCCTGCTGCGTGGAGACGGTGCGGGTTTCTGCGCCGGC AGCGATGTCAAGGAAATGGCCGGTGCGTCGATGGACGAGCGCCTGCATAT TGCGCAGCGCAAGGCTATGTTGATGCGTGCGCTGGCAGAGCTGGACAGGC CTGTCGTGTGCGCGGTGCACGGCTTCGCGCTCGGCGGTGGATTCATGCTC GCCATCGGTTGCGATGTGGTCGTGACCGCTACGGATGCGGCCTGGCGCCT GCCCGAGGTCGAACTTGGATTCTTCCCGCCCTGGGGCATTGAGGCGCTCG TGCGTCGAGTGGGGATTGCGCGGGCACGCTGGCTGGTCTGGGGCACGCAT CCGCTGACCGGATCGGAAGCGCTCCGGCTTGGGCTGGCGGAAGTCGACGC TCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57872:3..506-

>mRNA_P-wetherbeei_contig57872.1.1 ID=mRNA_P-wetherbeei_contig57872.1.1|Name=mRNA_P-wetherbeei_contig57872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57872:3..506- (Phaeothamnion wetherbeei SAG_119_79)
CGTGAACTCGTCCTTTCCCGAAACGAAGTCCGCAACGCGCTGGACCTCGC
CACCACCGAGCGGCTGATTCATTCGATTGCAGCGGCGCGCGACGACCCCG
CGATCCGCGTACTCCTGCTGCGTGGAGACGGTGCGGGTTTCTGCGCCGGC
AGCGATGTCAAGGAAATGGCCGGTGCGTCGATGGACGAGCGCCTGCATAT
TGCGCAGCGCAAGGCTATGTTGATGCGTGCGCTGGCAGAGCTGGACAGGC
CTGTCGTGTGCGCGGTGCACGGCTTCGCGCTCGGCGGTGGATTCATGCTC
GCCATCGGTTGCGATGTGGTCGTGACCGCTACGGATGCGGCCTGGCGCCT
GCCCGAGGTCGAACTTGGATTCTTCCCGCCCTGGGGCATTGAGGCGCTCG
TGCGTCGAGTGGGGATTGCGCGGGCACGCTGGCTGGTCTGGGGCACGCAT
CCGCTGACCGGATCGGAAGCGCTCCGGCTTGGGCTGGCGGAAGTCGACGC
TCCG
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