mRNA_P-wetherbeei_contig57816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57816.1.1
Unique NamemRNA_P-wetherbeei_contig57816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: A0A346A2M4_9HYPH (Dihydroorotase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A2M4_9HYPH)

HSP 1 Score: 310 bits (795), Expect = 1.200e-102
Identity = 149/169 (88.17%), Postives = 159/169 (94.08%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            RAVL AI+RRAAFHSEDEYRLRERM LRVE DP SHPIWRDATAALMCTQRLI LARETGKRVHVLHVT+KDEAEFLAAHKDVATAEATP+HL+LFAPDCYERLGT AQLNPP+RDA H+ GLWHGL QGVID++GSDHSPHT+EEKSHPYPKTHSGM GVQTLVP+ML
Sbjct:  168 RAVLNAIHRRAAFHSEDEYRLRERMDLRVENDPRSHPIWRDATAALMCTQRLITLARETGKRVHVLHVTSKDEAEFLAAHKDVATAEATPAHLSLFAPDCYERLGTRAQLNPPIRDAVHQAGLWHGLQQGVIDSLGSDHSPHTVEEKSHPYPKTHSGMPGVQTLVPLML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: A0A127ERT8_9HYPH (Dihydroorotase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ERT8_9HYPH)

HSP 1 Score: 308 bits (790), Expect = 7.060e-102
Identity = 146/169 (86.39%), Postives = 159/169 (94.08%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R VLKAI RRAAFHSEDEYRLRERM LRVEGDPSSHP+WRDATAALMCTQRL+ LARETGKRVHVLHVTTK+EA +LA HKDVA+ EATPSHLTL APDCY+RLGTLAQLNPP+RDA+HR+G+W GLAQGVIDT+GSDHSPHT EEK+HPYPKTHSGMTGVQTLVP+ML
Sbjct:  167 RNVLKAIRRRAAFHSEDEYRLRERMPLRVEGDPSSHPVWRDATAALMCTQRLVRLARETGKRVHVLHVTTKEEAAYLAEHKDVASCEATPSHLTLAAPDCYQRLGTLAQLNPPIRDASHRDGIWRGLAQGVIDTIGSDHSPHTREEKAHPYPKTHSGMTGVQTLVPVML 335          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: A0A371B3Z2_9HYPH (Dihydroorotase n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B3Z2_9HYPH)

HSP 1 Score: 294 bits (752), Expect = 3.910e-96
Identity = 137/169 (81.07%), Postives = 150/169 (88.76%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            RAVLK +NRR AFHSEDEYRLRERM  R++ DP SHP+WRDA AALMCTQRL+ LARETGKR+HVLHVTTKDEAEFLA HKDVA+AE TP+H+TL APDCYERLGTLAQLNPPVRDA H+ GLWH L QG+IDT GSDHSPHT EEK+HPYPK HSGM GVQTLVP+ML
Sbjct:  168 RAVLKNVNRRVAFHSEDEYRLRERMSFRIDNDPRSHPVWRDAQAALMCTQRLVRLARETGKRIHVLHVTTKDEAEFLAGHKDVASAEVTPAHVTLTAPDCYERLGTLAQLNPPVRDAMHKAGLWHALQQGIIDTCGSDHSPHTREEKAHPYPKAHSGMPGVQTLVPLML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: Q07IC1_RHOP5 (Dihydroorotase, multifunctional complex type n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07IC1_RHOP5)

HSP 1 Score: 272 bits (695), Expect = 1.520e-87
Identity = 123/169 (72.78%), Postives = 145/169 (85.80%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R +L  INRRAAFH+EDEYRL +R  LR+EGDP SHP+WRD  AAL+ TQRL+ LARE GKR+HVLH++TKDE EFL  HKDVAT E TP HLTL AP+CYERLGTLAQ+NPPVRDA HR+GLWHG+AQG++D +GSDH+PHTLEEK+ PYP + SGMTGVQTLVP++L
Sbjct:  168 RKILAVINRRAAFHAEDEYRLNDRKGLRIEGDPRSHPVWRDEVAALLATQRLVKLAREAGKRIHVLHISTKDEIEFLRDHKDVATCEVTPHHLTLAAPECYERLGTLAQMNPPVRDAVHRDGLWHGIAQGIVDVIGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPLLL 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: Q20YD3_RHOPB (Dihydroorotase, multifunctional complex type n=4 Tax=Rhodopseudomonas TaxID=1073 RepID=Q20YD3_RHOPB)

HSP 1 Score: 270 bits (690), Expect = 8.650e-87
Identity = 125/169 (73.96%), Postives = 145/169 (85.80%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R +L+ I RRAAFH+EDEYRL +R  LR+EGDP SHP+WRD  AAL  TQRL+ALARETGKR+HVLHV+TK E EFL  HKDVA+ E TP HLTL APDCYERLGTLAQ+NPPVRDAAHR+G+WHG+AQG++D +GSDH+PHTLEEKS  YP + SGMTGVQTLVP+ML
Sbjct:  168 RKILQVIQRRAAFHAEDEYRLNDRKALRIEGDPRSHPVWRDEIAALTATQRLVALARETGKRIHVLHVSTKQEIEFLREHKDVASVEVTPHHLTLAAPDCYERLGTLAQMNPPVRDAAHRDGIWHGVAQGIVDVLGSDHAPHTLEEKSKTYPASPSGMTGVQTLVPLML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: UPI001991ADB3 (Dihydroorotase n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI001991ADB3)

HSP 1 Score: 268 bits (686), Expect = 3.470e-86
Identity = 122/169 (72.19%), Postives = 146/169 (86.39%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R + + I RRAAFH+EDEYRL ER HLR+EGDP SHP+WRD TAAL  TQRL+ALA ETGKR+HVLH++TK+E EFL  HKDVA+ EATP HLTL AP+CYERLGTLAQ+NPPVRDA+HR+G+W+G+AQG+ID +GSDH+PHTL+EK   YP + SGMTGVQTLVP+ML
Sbjct:  168 RRIFQVIKRRAAFHAEDEYRLNERKHLRIEGDPRSHPVWRDETAALQATQRLVALAHETGKRIHVLHISTKEEIEFLRDHKDVASCEATPHHLTLTAPECYERLGTLAQMNPPVRDASHRDGIWNGIAQGIIDVLGSDHAPHTLQEKDKVYPASPSGMTGVQTLVPVML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: A0A1Q4BZP6_9HYPH (Dihydroorotase n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4BZP6_9HYPH)

HSP 1 Score: 266 bits (681), Expect = 1.970e-85
Identity = 120/169 (71.01%), Postives = 146/169 (86.39%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R +L  I RRA+FH+EDEYRL ER HLR+EGDP SHP+WRD TAAL  TQRL+A+ARETG R+HVLH++TK+E EFL  HKDVA+ EATP HLTL AP+CYE+LGT AQ+NPPVRDA+HREG+W+G+AQG++D +GSDH+PHTLEEK+  YP + SGMTGVQTLVP+ML
Sbjct:  168 RRILSVIRRRASFHAEDEYRLNERKHLRIEGDPRSHPVWRDETAALQATQRLVAIARETGARIHVLHISTKEEIEFLRDHKDVASCEATPHHLTLAAPECYEQLGTRAQMNPPVRDASHREGIWYGIAQGIVDVLGSDHAPHTLEEKAKTYPASPSGMTGVQTLVPVML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: UPI00131C44FE (dihydroorotase n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00131C44FE)

HSP 1 Score: 264 bits (675), Expect = 1.580e-84
Identity = 123/169 (72.78%), Postives = 142/169 (84.02%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R + K I RRAAFH+EDEYRL ER  LR+EGDP SHP+WRD  AAL+ TQRL+ALARETGKR+HVLH++TK E EFL  HKDVA+ EATP HLTL AP+CYERLGTLAQ+NPPVR A HREG+W G+ QG+ID +GSDH+PHTLEEKS  YP + SGMTGVQTLVP+ML
Sbjct:  168 RRIFKVIQRRAAFHAEDEYRLNERKPLRIEGDPRSHPVWRDEPAALIATQRLVALARETGKRIHVLHISTKQEIEFLRDHKDVASCEATPHHLTLVAPECYERLGTLAQMNPPVRSADHREGIWRGIEQGIIDVLGSDHAPHTLEEKSKTYPASPSGMTGVQTLVPVML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: A0A3S0DF28_9BRAD (Dihydroorotase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A3S0DF28_9BRAD)

HSP 1 Score: 264 bits (674), Expect = 2.230e-84
Identity = 120/169 (71.01%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R + + I RRAAFH+EDEYRL +R HLR+EGDP SHP+WRD  AALM TQRL+ALARETGKR+HVLH++TK+E E+L  HKDVAT EATP HLTL  P+ YERLGT AQ+NPPVRDA+HREG+W G+ QG++D +GSDH+PHTLEEKS  YP + SGMTGVQTLVP+ML
Sbjct:  168 RRIFEVIRRRAAFHAEDEYRLNDRKHLRIEGDPRSHPVWRDEIAALMATQRLVALARETGKRIHVLHISTKEEIEYLREHKDVATCEATPHHLTLAGPEAYERLGTKAQMNPPVRDASHREGIWRGIEQGIVDVLGSDHAPHTLEEKSKTYPASPSGMTGVQTLVPVML 336          
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Match: A0A6L5FLN2_9HYPH (Dihydroorotase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FLN2_9HYPH)

HSP 1 Score: 263 bits (671), Expect = 6.870e-84
Identity = 124/169 (73.37%), Postives = 140/169 (82.84%), Query Frame = 1
Query:    1 RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQRLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDCYERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHPYPKTHSGMTGVQTLVPIML 507
            R +L+ I RRA+FHSEDE RLRER HLR+EGDP SHP+WRD  AAL CT RL+ LARETGKRVHVLHVTT  E   L AHKDVA+ E TP HLT+ AP+CYERLG LAQ+NPPVRDAAHR  LWHGLAQGV+D +GSDH+PHT EEK+ PYP + SGMTGVQTLVP+ML
Sbjct:  168 RNILRVIRRRASFHSEDEPRLRERRHLRIEGDPRSHPVWRDEDAALTCTTRLVRLARETGKRVHVLHVTTAREMALLRAHKDVASVEVTPHHLTMTAPECYERLGALAQMNPPVRDAAHRAALWHGLAQGVVDVLGSDHAPHTREEKAKPYPASPSGMTGVQTLVPLML 336          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A2M4_9HYPH1.200e-10288.17Dihydroorotase n=1 Tax=Pseudolabrys taiwanensis Ta... [more]
A0A127ERT8_9HYPH7.060e-10286.39Dihydroorotase n=1 Tax=Rhodoplanes sp. Z2-YC6860 T... [more]
A0A371B3Z2_9HYPH3.910e-9681.07Dihydroorotase n=2 Tax=unclassified Pseudolabrys T... [more]
Q07IC1_RHOP51.520e-8772.78Dihydroorotase, multifunctional complex type n=1 T... [more]
Q20YD3_RHOPB8.650e-8773.96Dihydroorotase, multifunctional complex type n=4 T... [more]
UPI001991ADB33.470e-8672.19Dihydroorotase n=1 Tax=Tardiphaga sp. TaxID=192629... [more]
A0A1Q4BZP6_9HYPH1.970e-8571.01Dihydroorotase n=1 Tax=Rhizobiales bacterium 62-47... [more]
UPI00131C44FE1.580e-8472.78dihydroorotase n=2 Tax=unclassified Bradyrhizobium... [more]
A0A3S0DF28_9BRAD2.230e-8471.01Dihydroorotase n=1 Tax=Bradyrhizobiaceae bacterium... [more]
A0A6L5FLN2_9HYPH6.870e-8473.37Dihydroorotase n=1 Tax=Hyphomicrobiales bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57816contigP-wetherbeei_contig57816:3..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog316055.RPE_4389
Preferred namepyrC1
PFAMsAmidohydro_1
Model size507
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00632
KEGG koko:K01465
KEGG ReactionR01993
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-88
EggNOG OGsCOG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,2TSQH@28211|Alphaproteobacteria,3JRZI@41294|Bradyrhizobiaceae
EC3.5.2.3
DescriptionAmidohydrolase family
Cds size507
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.9688296-CDS-P-wetherbeei_contig57816:2..5091683186856.9688296-CDS-P-wetherbeei_contig57816:2..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57816 3..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57816.1.1prot_P-wetherbeei_contig57816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57816 3..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57816.1.1

>prot_P-wetherbeei_contig57816.1.1 ID=prot_P-wetherbeei_contig57816.1.1|Name=mRNA_P-wetherbeei_contig57816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
RAVLKAINRRAAFHSEDEYRLRERMHLRVEGDPSSHPIWRDATAALMCTQ
RLIALARETGKRVHVLHVTTKDEAEFLAAHKDVATAEATPSHLTLFAPDC
YERLGTLAQLNPPVRDAAHREGLWHGLAQGVIDTVGSDHSPHTLEEKSHP
YPKTHSGMTGVQTLVPIML
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mRNA from alignment at P-wetherbeei_contig57816:3..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57816.1.1 ID=mRNA_P-wetherbeei_contig57816.1.1|Name=mRNA_P-wetherbeei_contig57816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57816:3..509- (Phaeothamnion wetherbeei SAG_119_79)
CGCGCCGTGCTCAAGGCCATCAACCGCCGCGCCGCGTTCCATTCCGAGGA CGAGTACCGGTTGCGCGAGCGCATGCATCTGCGCGTCGAAGGCGATCCGT CGTCGCATCCCATCTGGCGCGACGCCACCGCGGCGCTGATGTGCACGCAG CGGCTGATCGCCTTGGCGCGCGAGACCGGCAAGCGCGTGCACGTCTTGCA CGTCACGACCAAGGACGAGGCGGAATTCCTCGCCGCTCACAAAGACGTCG CCACCGCGGAGGCGACGCCCTCGCATCTGACGTTGTTCGCGCCGGATTGC TACGAGCGGCTCGGCACGCTGGCGCAGCTCAATCCGCCGGTGCGCGACGC CGCGCATCGCGAGGGCCTGTGGCACGGTCTCGCGCAAGGCGTGATCGATA CCGTAGGTTCCGATCACTCGCCGCATACGCTCGAGGAAAAGTCGCACCCC TATCCGAAAACTCATTCTGGAATGACCGGCGTGCAGACGTTGGTTCCGAT CATGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57816:3..509-

>mRNA_P-wetherbeei_contig57816.1.1 ID=mRNA_P-wetherbeei_contig57816.1.1|Name=mRNA_P-wetherbeei_contig57816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57816:3..509- (Phaeothamnion wetherbeei SAG_119_79)
CGCGCCGTGCTCAAGGCCATCAACCGCCGCGCCGCGTTCCATTCCGAGGA
CGAGTACCGGTTGCGCGAGCGCATGCATCTGCGCGTCGAAGGCGATCCGT
CGTCGCATCCCATCTGGCGCGACGCCACCGCGGCGCTGATGTGCACGCAG
CGGCTGATCGCCTTGGCGCGCGAGACCGGCAAGCGCGTGCACGTCTTGCA
CGTCACGACCAAGGACGAGGCGGAATTCCTCGCCGCTCACAAAGACGTCG
CCACCGCGGAGGCGACGCCCTCGCATCTGACGTTGTTCGCGCCGGATTGC
TACGAGCGGCTCGGCACGCTGGCGCAGCTCAATCCGCCGGTGCGCGACGC
CGCGCATCGCGAGGGCCTGTGGCACGGTCTCGCGCAAGGCGTGATCGATA
CCGTAGGTTCCGATCACTCGCCGCATACGCTCGAGGAAAAGTCGCACCCC
TATCCGAAAACTCATTCTGGAATGACCGGCGTGCAGACGTTGGTTCCGAT
CATGCTG
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