mRNA_P-wetherbeei_contig57774.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57774.1.1
Unique NamemRNA_P-wetherbeei_contig57774.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: UPI001C028DDA (ABC transporter permease n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C028DDA)

HSP 1 Score: 167 bits (422), Expect = 4.060e-49
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPFASIVRRVIWPGALPSILAGFRI+ASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGKLINLLE RLLHWR
Sbjct:  182 AQSFNVPFASIVRRVIWPGALPSILAGFRISASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKLINLLETRLLHWR 277
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: UPI0015761241 (ABC transporter permease n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI0015761241)

HSP 1 Score: 164 bits (415), Expect = 4.740e-48
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITAS+ALLLVVSAEMIGA+FGIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGKLIN+LE+RLLHWR
Sbjct:  183 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASIALLLVVSAEMIGAEFGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKLINMLEVRLLHWR 278
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: A0A4Q8R015_9BRAD (ABC transporter permease n=26 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A4Q8R015_9BRAD)

HSP 1 Score: 164 bits (414), Expect = 7.470e-48
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQ+GIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGKLINLLE RLLHWR
Sbjct:  187 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQYGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKLINLLEARLLHWR 282
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: A0A4U6RHH9_BRAEL (ABC transporter permease n=58 Tax=Proteobacteria TaxID=1224 RepID=A0A4U6RHH9_BRAEL)

HSP 1 Score: 164 bits (414), Expect = 7.470e-48
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQ+GIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGKLINLLE RLLHWR
Sbjct:  187 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQYGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKLINLLEARLLHWR 282
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: A0A533JEZ5_9BRAD (ABC transporter permease n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533JEZ5_9BRAD)

HSP 1 Score: 163 bits (413), Expect = 1.000e-47
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVV+LS+ GLA+GKLINLLE RLLHWR
Sbjct:  185 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVILSVFGLAIGKLINLLEARLLHWR 280
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: A0A1M6SWF3_9BRAD (NitT/TauT family transport system permease protein n=2 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6SWF3_9BRAD)

HSP 1 Score: 162 bits (411), Expect = 2.290e-47
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGA++GIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGKLINLLE RLLHWR
Sbjct:  190 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAEYGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKLINLLETRLLHWR 285
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: UPI000421228C (ABC transporter permease n=1 Tax=Bradyrhizobium sp. Tv2a-2 TaxID=113395 RepID=UPI000421228C)

HSP 1 Score: 162 bits (410), Expect = 2.480e-47
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPFA+IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGA++GIGAFVLQAGNLMQTDQLLAGVV+LSL GLA+GKLI LLE RLLHWR
Sbjct:  180 AQSFNVPFAAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAEYGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAIGKLIGLLETRLLHWR 275
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: UPI001BAC113E (ABC transporter permease n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAC113E)

HSP 1 Score: 162 bits (410), Expect = 2.480e-47
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQ+GIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGKLIN+LE RLLHWR
Sbjct:  180 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQWGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKLINMLEARLLHWR 275
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: UPI001BCF764F (ABC transporter permease n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCF764F)

HSP 1 Score: 162 bits (410), Expect = 2.610e-47
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF SIVRRVIWPGALPSILAGFRITAS+ALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVG+LIN LE RLLHWR
Sbjct:  182 AQSFNVPFHSIVRRVIWPGALPSILAGFRITASIALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGRLINWLETRLLHWR 277
[Close]
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Match: A0A1B1U8P6_9BRAD (ABC transporter permease n=19 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1U8P6_9BRAD)

HSP 1 Score: 162 bits (409), Expect = 3.410e-47
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    1 AQSFGVPFASIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLLHWR 288
            AQSF VPF +IVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVV+LSL GLAVGK IN+LE RLLHWR
Sbjct:  179 AQSFNVPFHAIVRRVIWPGALPSILAGFRITASVALLLVVSAEMIGAQFGIGAFVLQAGNLMQTDQLLAGVVILSLFGLAVGKAINVLEARLLHWR 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57774.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C028DDA4.060e-4994.79ABC transporter permease n=3 Tax=unclassified Brad... [more]
UPI00157612414.740e-4890.63ABC transporter permease n=1 Tax=Bradyrhizobium sp... [more]
A0A4Q8R015_9BRAD7.470e-4892.71ABC transporter permease n=26 Tax=Bradyrhizobiacea... [more]
A0A4U6RHH9_BRAEL7.470e-4892.71ABC transporter permease n=58 Tax=Proteobacteria T... [more]
A0A533JEZ5_9BRAD1.000e-4791.67ABC transporter permease n=1 Tax=Bradyrhizobium ic... [more]
A0A1M6SWF3_9BRAD2.290e-4791.67NitT/TauT family transport system permease protein... [more]
UPI000421228C2.480e-4790.63ABC transporter permease n=1 Tax=Bradyrhizobium sp... [more]
UPI001BAC113E2.480e-4791.67ABC transporter permease n=1 Tax=Bradyrhizobium la... [more]
UPI001BCF764F2.610e-4791.67ABC transporter permease n=1 Tax=Bradyrhizobium sp... [more]
A0A1B1U8P6_9BRAD3.410e-4791.67ABC transporter permease n=19 Tax=Bradyrhizobium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57774contigP-wetherbeei_contig57774:1..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038860.AXAP01000077_gene2234
Preferred nameMA20_40220
PFAMsBPD_transp_1
Model size385
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02050,ko:K15554
KEGG TC3.A.1.16,3.A.1.17,3.A.1.17.2
KEGG Pathwayko00920,ko02010,map00920,map02010
KEGG ModuleM00188,M00436
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.14e-23
EggNOG OGsCOG0600@1|root,COG0600@2|Bacteria,1MWS0@1224|Proteobacteria,2VET7@28211|Alphaproteobacteria,3JT5Y@41294|Bradyrhizobiaceae
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size162
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.5201213-UTR-P-wetherbeei_contig57774:0..1291683186856.5201213-UTR-P-wetherbeei_contig57774:0..129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57774 1..129 +
1683186856.5411072-UTR-P-wetherbeei_contig57774:291..3851683186856.5411072-UTR-P-wetherbeei_contig57774:291..385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57774 292..385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.531431-CDS-P-wetherbeei_contig57774:129..2911683186856.531431-CDS-P-wetherbeei_contig57774:129..291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57774 130..291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57774.1.1prot_P-wetherbeei_contig57774.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57774 130..291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57774.1.1

>prot_P-wetherbeei_contig57774.1.1 ID=prot_P-wetherbeei_contig57774.1.1|Name=mRNA_P-wetherbeei_contig57774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
MIGAQFGIGAFVLQAGNLMQTDQLLAGVVVLSLSGLAVGKLINLLEIRLL
HWR*
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mRNA from alignment at P-wetherbeei_contig57774:1..385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57774.1.1 ID=mRNA_P-wetherbeei_contig57774.1.1|Name=mRNA_P-wetherbeei_contig57774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=385bp|location=Sequence derived from alignment at P-wetherbeei_contig57774:1..385+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCAGAGCTTTGGCGTGCCGTTCGCCTCGATCGTGCGCCGGGTGATCTG
GCCGGGCGCGCTGCCCTCGATCCTCGCCGGCTTCCGCATCACCGCCTCGG
TCGCGTTGCTTTTGGTGGTCAGCGCTGAAATGATCGGCGCCCAATTCGGC
ATCGGCGCCTTTGTGCTGCAGGCCGGCAACCTGATGCAGACCGATCAACT
GCTGGCGGGCGTCGTTGTCCTGTCGCTGTCCGGGCTCGCGGTGGGGAAGC
TGATCAACCTGCTGGAGATCCGGTTGCTGCACTGGCGGTAGATTTCCGGC
GTCATTCCGGGGCGATGCGAAGCATCGAACCCGGAATCCTAGGATTCCGG
GTCTGGTGCCAACGCACCATCCCGGAATGACGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57774:1..385+

>mRNA_P-wetherbeei_contig57774.1.1 ID=mRNA_P-wetherbeei_contig57774.1.1|Name=mRNA_P-wetherbeei_contig57774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig57774:1..385+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGGCGCCCAATTCGGCATCGGCGCCTTTGTGCTGCAGGCCGGCAA
CCTGATGCAGACCGATCAACTGCTGGCGGGCGTCGTTGTCCTGTCGCTGT
CCGGGCTCGCGGTGGGGAAGCTGATCAACCTGCTGGAGATCCGGTTGCTG
CACTGGCGGTAG
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