mRNA_P-wetherbeei_contig57317.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57317.1.1
Unique NamemRNA_P-wetherbeei_contig57317.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: C8S1I6_9RHOB (Hemolysin-type calcium-binding region n=1 Tax=Rhodobacter sp. SW2 TaxID=371731 RepID=C8S1I6_9RHOB)

HSP 1 Score: 89.4 bits (220), Expect = 1.320e-17
Identity = 82/118 (69.49%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   13 TASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            TASY+ STA V VNL TG G+ GDAAGD L+GIENL+G    DTLTGDAGAN+XXXXXXXXXXXXXXXXXXXXXXXXXXX          +VNL  G+G+GGDA GDVL+ IEN+ GS
Sbjct:   84 TASYAASTAAVSVNLTTGTGSGGDAAGDTLSGIENLLGSDYNDTLTGDAGANVXXXXXXXXXXXXXXXXXXXXXXXXXXXADYSLSLAAVNVNLTTGTGSGGDAAGDVLTAIENLTGS 201          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: UPI001C99D396 (Ig-like domain-containing protein n=1 Tax=Azospirillum sp. 412522 TaxID=2494548 RepID=UPI001C99D396)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-15
Identity = 80/119 (67.23%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   10 DTASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            DTA+Y+ S A V V+LA GAG  GDA GD+L+GIENLVG    D L+GDAGAN+XXXXXXXXXXXXXXXXXXXXXXXXXX            V+L+AG+G GGDAEGDVLSG+EN+ GS
Sbjct:  919 DTATYAASGAGVTVDLAAGAGLGGDAEGDLLSGIENLVGSGHDDRLSGDAGANLXXXXXXXXXXXXXXXXXXXXXXXXXXTADYSASGAGVTVDLSAGTGLGGDAEGDVLSGVENLTGS 1037          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: UPI001FCAD6BB (calcium-binding protein n=1 Tax=Azospirillum sp. B506 TaxID=137721 RepID=UPI001FCAD6BB)

HSP 1 Score: 82.0 bits (201), Expect = 4.400e-15
Identity = 87/117 (74.36%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   16 ASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            A YS S A V V+L++GAG  GDA GD+L+GIENL G   GD LTGD G N+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V+L AG+G GGDAEGD+LSGIENV GS
Sbjct:  381 ADYSASAAGVAVDLSSGAGLGGDAEGDLLSGIENLTGSAQGDRLTGDGGVNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTVDLVAGTGVGGDAEGDLLSGIENVTGS 497          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: G7ZGF9_AZOL4 (Cadherin domain-containing protein n=1 Tax=Azospirillum lipoferum (strain 4B) TaxID=862719 RepID=G7ZGF9_AZOL4)

HSP 1 Score: 82.0 bits (201), Expect = 5.170e-15
Identity = 76/119 (63.87%), Postives = 88/119 (73.95%), Query Frame = 1
Query:   10 DTASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            DTASY+ S A V V+LA G+G  GDA GD LTG+ENL+G   GD   G+ GAN+  XXXXXXXXXXXXXXXXXXXXXXXX            V+LAAG+G+GGDAEGD+LSGIEN+ GS
Sbjct:  919 DTASYAASGAGVTVDLAAGSGAGGDAEGDRLTGVENLIGSAHGDRXXGNGGANLLDXXXXXXXXXXXXXXXXXXXXXXXXTADYSASDTGVTVDLAAGAGSGGDAEGDLLSGIENLTGS 1037          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: A0A0F2KS61_9PROT (Calcium-binding protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=A0A0F2KS61_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 5.170e-15
Identity = 80/121 (66.12%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    4 GSDTASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            G D A YS S A V V+LA G G  GDA GDVL GIEN+ G   GD LTGD  AN XXXXXXXXXXXXXXXXXXXXXXXXXX            V+L+AG+G GGDAEGDVLSG+ENV GS
Sbjct: 1233 GIDLADYSASAAGVTVDLAAGTGAGGDAEGDVLAGIENVTGSAFGDRLTGDGAANXXXXXXXXXXXXXXXXXXXXXXXXXXXTADYSASTGGVAVDLSAGAGAGGDAEGDVLSGVENVTGS 1353          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: A0A554TXV8_9MYCO (Tandem-95 repeat protein (Fragment) n=1 Tax=Mycobacterium sp. KBS0706 TaxID=2578109 RepID=A0A554TXV8_9MYCO)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14
Identity = 77/119 (64.71%), Postives = 90/119 (75.63%), Query Frame = 1
Query:   10 DTASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            D A+Y  +TA V VNL TGAG+ GDA GD   GIEN+ GG AGDT+TG+ GAN+XXXXXXXXXXXXXXXXXXXXXXXXXX            VNL  G+G+GG+A+GD L+GIEN+VGS
Sbjct:  518 DLATYWGTTAAVAVNLLTGAGSGGDAQGDTYFGIENVHGGMAGDTITGNDGANVXXXXXXXXXXXXXXXXXXXXXXXXXXLVTYDGSTAGVTVNLQTGAGSGGEAQGDTLTGIENLVGS 636          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: UPI00186AB366 (cellulase family glycosylhydrolase n=1 Tax=Aureimonas psammosilenae TaxID=2495496 RepID=UPI00186AB366)

HSP 1 Score: 80.1 bits (196), Expect = 2.310e-14
Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   13 TASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            TASY+ S A + ++L  G GT GDA GD LTGIEN++G    DTL GDAGAN XXXXXXXXXXXXXXXXXXXXXXXXXXX           V+LAAG+GTGGDAEGD L  IEN+ GS
Sbjct:  757 TASYTNSRAGIQIDLTAGTGTGGDAEGDKLTGIENIIGSNFSDTLRGDAGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSYAGSQSGVKVDLAAGTGTGGDAEGDTLFSIENLTGS 874          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: A0A1I1TJ38_9RHOB (Ca2+-binding protein, RTX toxin-related n=1 Tax=Sulfitobacter brevis TaxID=74348 RepID=A0A1I1TJ38_9RHOB)

HSP 1 Score: 79.3 bits (194), Expect = 3.990e-14
Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 1
Query:   22 YSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---------VNLAAGSGTGGDAEGDVLSGIENVVGS 366
            YSTST+ V VNL TG G+ GDA GDVL+  ENL G    D+LTGDAGAN+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  D         VNLA G+G+GGDA+GD L+G+EN+ GS
Sbjct:  230 YSTSTSAVTVNLTTGIGSGGDAQGDVLSNFENLAGSNYNDSLTGDAGANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADYTTSGAGVTVNLATGTGSGGDAQGDTLTGVENITGS 353          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: A0A554UCE9_9MYCO (Calcium-binding protein n=1 Tax=Mycobacterium sp. KBS0706 TaxID=2578109 RepID=A0A554UCE9_9MYCO)

HSP 1 Score: 79.3 bits (194), Expect = 4.190e-14
Identity = 74/119 (62.18%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   10 DTASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            DT  Y  S   V V+L TG GTAGDA GD LT IEN+VG    D L GD GAN+    XXXXXXXXXXXXXXXXXXXXXX            V+LAAG+GTGGDA+GD LSGIE++VGS
Sbjct:  619 DTVYYDGSAIGVGVDLRTGTGTAGDAQGDTLTAIENIVGSAFVDILQGDGGANVLSGGXXXXXXXXXXXXXXXXXXXXXXRVDYDGSAAGVQVDLAAGTGTGGDAQGDTLSGIEDIVGS 737          
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Match: A0A2U1WKZ0_9PROT (Calcium-binding protein (Fragment) n=1 Tax=Azospirillum sp. TSA6c TaxID=709813 RepID=A0A2U1WKZ0_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 6.030e-14
Identity = 78/119 (65.55%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 DTASYSTSTATVXVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLTGDAGANIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNLAAGSGTGGDAEGDVLSGIENVVGS 366
            DTA+Y+ S A V V+LA G G  GDA GD LTGIE +VG    D LTGDA AN   XXXXXXXXXXXXXXXXXXXXXXXX            V+LAAG+G GGDAEGDVLSGIEN+ GS
Sbjct:  919 DTATYAASGAGVTVDLAAGTGAGGDAEGDRLTGIETVVGSAHDDRLTGDAAANRLEXXXXXXXXXXXXXXXXXXXXXXXXTADYSASEAGVTVDLAAGTGLGGDAEGDVLSGIENLTGS 1037          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57317.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C8S1I6_9RHOB1.320e-1769.49Hemolysin-type calcium-binding region n=1 Tax=Rhod... [more]
UPI001C99D3961.110e-1567.23Ig-like domain-containing protein n=1 Tax=Azospiri... [more]
UPI001FCAD6BB4.400e-1574.36calcium-binding protein n=1 Tax=Azospirillum sp. B... [more]
G7ZGF9_AZOL45.170e-1563.87Cadherin domain-containing protein n=1 Tax=Azospir... [more]
A0A0F2KS61_9PROT5.170e-1566.12Calcium-binding protein n=1 Tax=Azospirillum thiop... [more]
A0A554TXV8_9MYCO1.200e-1464.71Tandem-95 repeat protein (Fragment) n=1 Tax=Mycoba... [more]
UPI00186AB3662.310e-1466.10cellulase family glycosylhydrolase n=1 Tax=Aureimo... [more]
A0A1I1TJ38_9RHOB3.990e-1469.35Ca2+-binding protein, RTX toxin-related n=1 Tax=Su... [more]
A0A554UCE9_9MYCO4.190e-1462.18Calcium-binding protein n=1 Tax=Mycobacterium sp. ... [more]
A0A2U1WKZ0_9PROT6.030e-1465.55Calcium-binding protein (Fragment) n=1 Tax=Azospir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57317contigP-wetherbeei_contig57317:7..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog371731.Rsw2DRAFT_1914
PFAMsHemolysinCabind
Model size504
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.16e-18
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,1FCQD@1060|Rhodobacter
DescriptionHaemolysin-type calcium-binding repeat (2 copies)
Cds size504
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.4373527-CDS-P-wetherbeei_contig57317:6..5101683186850.4373527-CDS-P-wetherbeei_contig57317:6..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57317 7..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57317.1.1prot_P-wetherbeei_contig57317.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57317 7..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57317.1.1

>prot_P-wetherbeei_contig57317.1.1 ID=prot_P-wetherbeei_contig57317.1.1|Name=mRNA_P-wetherbeei_contig57317.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
SGSDTASYSTSTATVTVNLATGAGTAGDAAGDVLTGIENLVGGTAGDTLT
GDAGANIVDGGAGADTLAGGAGADTLIGGSGTDTATYAASADAVDVNLAA
GSGTGGDAEGDVLSGIENVVGSAGADTITGDTGANSLDGGTGDDTLAGGA
GADTLTGGTGTDTANYAA
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mRNA from alignment at P-wetherbeei_contig57317:7..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57317.1.1 ID=mRNA_P-wetherbeei_contig57317.1.1|Name=mRNA_P-wetherbeei_contig57317.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57317:7..510- (Phaeothamnion wetherbeei SAG_119_79)
TCGGGCAGCGACACGGCGAGCTATTCGACGTCGACCGCGACGGTGACGGT CAACCTCGCGACGGGTGCGGGTACTGCCGGCGATGCGGCCGGCGACGTGC TGACCGGGATCGAGAATCTCGTCGGCGGCACGGCCGGCGACACGCTGACC GGCGACGCCGGGGCGAATATCGTCGACGGCGGCGCCGGGGCGGACACGCT GGCCGGCGGCGCCGGGGCCGACACGCTGATCGGCGGTTCGGGCACCGACA CGGCGACCTACGCGGCATCGGCCGACGCAGTCGACGTGAACCTTGCGGCC GGCTCCGGAACCGGCGGCGATGCCGAGGGCGACGTGCTATCGGGCATCGA GAACGTCGTCGGCTCGGCCGGCGCCGACACCATCACCGGCGATACGGGCG CCAACTCGCTCGACGGCGGTACCGGCGACGACACGCTGGCCGGCGGGGCG GGTGCCGACACGCTGACCGGCGGGACCGGCACCGATACGGCGAACTACGC CGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57317:7..510-

>mRNA_P-wetherbeei_contig57317.1.1 ID=mRNA_P-wetherbeei_contig57317.1.1|Name=mRNA_P-wetherbeei_contig57317.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57317:7..510- (Phaeothamnion wetherbeei SAG_119_79)
TCGGGCAGCGACACGGCGAGCTATTCGACGTCGACCGCGACGGTGACGGT
CAACCTCGCGACGGGTGCGGGTACTGCCGGCGATGCGGCCGGCGACGTGC
TGACCGGGATCGAGAATCTCGTCGGCGGCACGGCCGGCGACACGCTGACC
GGCGACGCCGGGGCGAATATCGTCGACGGCGGCGCCGGGGCGGACACGCT
GGCCGGCGGCGCCGGGGCCGACACGCTGATCGGCGGTTCGGGCACCGACA
CGGCGACCTACGCGGCATCGGCCGACGCAGTCGACGTGAACCTTGCGGCC
GGCTCCGGAACCGGCGGCGATGCCGAGGGCGACGTGCTATCGGGCATCGA
GAACGTCGTCGGCTCGGCCGGCGCCGACACCATCACCGGCGATACGGGCG
CCAACTCGCTCGACGGCGGTACCGGCGACGACACGCTGGCCGGCGGGGCG
GGTGCCGACACGCTGACCGGCGGGACCGGCACCGATACGGCGAACTACGC
CGCC
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