mRNA_P-wetherbeei_contig57190.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57190.1.1
Unique NamemRNA_P-wetherbeei_contig57190.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A6J4VH84_9CHLR (Mobile element protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VH84_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P +  S+ +PVWA   A+  AHPAV+PTH LGCHR R+ DR+ F+  +AAL+ G
Sbjct:    1 MPAVPVSLPDPVWAQFSALLPAHPAVSPTHPLGCHRPRVPDRVVFERVVAALVHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A418MM79_9ACTN (IS5 family transposase n=11 Tax=Micromonosporaceae TaxID=28056 RepID=A0A418MM79_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 8.250e-9
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P L  S+ EPVW    A+    P   PTH LGCHRRRI DR+ F+H +AAL+ G
Sbjct:    1 MPALPSSLFEPVWVQFAALWPEQPEFDPTHPLGCHRRRIPDRVVFEHVIAALVHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: UPI0003A81B0B (transposase n=1 Tax=Micromonospora sp. CNB394 TaxID=1169151 RepID=UPI0003A81B0B)

HSP 1 Score: 58.5 bits (140), Expect = 1.320e-8
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P L  S+ EPVW    A+    P   P H LGCHRRRI DR+ F+H +AAL+ G
Sbjct:    1 MPALPSSLLEPVWVQFAALWPERPEFDPAHPLGCHRRRIPDRVVFEHAIAALVHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A511D803_9PSEU (Transposase n=1 Tax=Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 TaxID=1123024 RepID=A0A511D803_9PSEU)

HSP 1 Score: 57.0 bits (136), Expect = 5.880e-8
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCA-VPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P+L  S++EP+W    A + +  P   PTH  GCHRRRI DR+ FDH LAAL+ G
Sbjct:    1 MPLLPASLTEPLWVEFAALIGSDRPEFDPTHPWGCHRRRIPDRVVFDHVLAALVHG 56          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A6J4IFH0_9CHLR (Transposase n=1 Tax=uncultured Chloroflexia bacterium TaxID=1672391 RepID=A0A6J4IFH0_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 7.780e-8
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P +  S+ EP+WA    +    PA+ PTH LGCHRRR+ DR+ FDH + A++ G
Sbjct:    1 MPAVPVSLIEPIWAEFAMLLPDRPAMDPTHPLGCHRRRVPDRVVFDHVVDAMVHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A8J3P4S5_9ACTN (Uncharacterized protein n=1 Tax=Catellatospora coxensis TaxID=310354 RepID=A0A8J3P4S5_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 8.200e-8
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P L  S+  P+W    A+    P   PTH LGCHRRRI DR+ F+H + AL+ G
Sbjct:    1 MPALPSSLLNPIWVEFAALLPQRPEFDPTHPLGCHRRRIPDRVVFEHIIDALVHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A7W0XY41_9ACTN (IS5/IS1182 family transposase (Fragment) n=1 Tax=Propionibacteriaceae bacterium TaxID=2021380 RepID=A0A7W0XY41_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.450e-7
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query:   28 EPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            EPVW     +    P V PTH LGCHRRR+ DR+ F H +AAL+ G
Sbjct:    3 EPVWEQFAVLLPERPVVVPTHPLGCHRRRVPDRVVFAHVVAALVHG 48          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A6J4UBX8_9CHLR (Putative transposase n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UBX8_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 1.480e-7
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +PVL   + EP+ A    +   HPA AP H LGCHR+RI DR+ FDH +AA++ G
Sbjct:    1 MPVLPVCLLEPIRARFVVLLPDHPAAAPAHPLGCHRKRIPDRVVFDHVVAAVVHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: UPI001F59DA98 (IS5 family transposase n=1 Tax=Saccharopolyspora sp. K220 TaxID=2926618 RepID=UPI001F59DA98)

HSP 1 Score: 55.8 bits (133), Expect = 1.490e-7
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +PVL  S+ EP+W    A+    P   P H LGCHRRRI DR+ F+H + AL+ G
Sbjct:    1 MPVLPSSLIEPIWVQFAALLPDRPEFDPRHPLGCHRRRIPDRVVFEHVIDALIHG 55          
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A1Q5CDT8_9ACTN (Transposase n=1 Tax=Micromonospora sp. CB01531 TaxID=1718947 RepID=A0A1Q5CDT8_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 2.830e-7
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
            +P L  S+ E VW    A+    P   PTH LGCHRRRI DR+ F+H +AAL+ G
Sbjct:    1 MPALPSSLLEAVWVQFDALRGQLPEFDPTHPLGCHRRRIPDRVVFEHVIAALVHG 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J4VH84_9CHLR1.600e-950.91Mobile element protein n=1 Tax=uncultured Thermomi... [more]
A0A418MM79_9ACTN8.250e-950.91IS5 family transposase n=11 Tax=Micromonosporaceae... [more]
UPI0003A81B0B1.320e-849.09transposase n=1 Tax=Micromonospora sp. CNB394 TaxI... [more]
A0A511D803_9PSEU5.880e-850.00Transposase n=1 Tax=Pseudonocardia asaccharolytica... [more]
A0A6J4IFH0_9CHLR7.780e-845.45Transposase n=1 Tax=uncultured Chloroflexia bacter... [more]
A0A8J3P4S5_9ACTN8.200e-845.45Uncharacterized protein n=1 Tax=Catellatospora cox... [more]
A0A7W0XY41_9ACTN1.450e-752.17IS5/IS1182 family transposase (Fragment) n=1 Tax=P... [more]
A0A6J4UBX8_9CHLR1.480e-749.09Putative transposase n=1 Tax=uncultured Thermomicr... [more]
UPI001F59DA981.490e-747.27IS5 family transposase n=1 Tax=Saccharopolyspora s... [more]
A0A1Q5CDT8_9ACTN2.830e-749.09Transposase n=1 Tax=Micromonospora sp. CB01531 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57190contigP-wetherbeei_contig57190:105..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123024.AUII01000054_gene3168
PFAMsDDE_Tnp_1,DDE_Tnp_1_2,DUF4096
Model size195
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.69e-09
EggNOG OGsCOG3293@1|root,COG3293@2|Bacteria,2ICBV@201174|Actinobacteria,4EB0I@85010|Pseudonocardiales
DescriptionTransposase DDE domain
Cds size195
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.6719117-CDS-P-wetherbeei_contig57190:104..2991683186848.6719117-CDS-P-wetherbeei_contig57190:104..299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57190 105..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57190.1.1prot_P-wetherbeei_contig57190.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57190 105..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57190.1.1

>prot_P-wetherbeei_contig57190.1.1 ID=prot_P-wetherbeei_contig57190.1.1|Name=mRNA_P-wetherbeei_contig57190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLA
ALMPGPALNIPPSL*
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mRNA from alignment at P-wetherbeei_contig57190:105..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57190.1.1 ID=mRNA_P-wetherbeei_contig57190.1.1|Name=mRNA_P-wetherbeei_contig57190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig57190:105..299- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCGTCCTCTCCGGTTCGGTCAGCGAGCCGGTGTGGGCCCCGTCTTG CGCGGTGCCTGCCGCGCATCCAGCCGTCGCCCCGACCCATTCGCTGGGGT GCCATCGGCGTCGGATCGATGATCGGCTGGCCTTCGATCATGGGCTGGCC GCCCTGATGCCTGGCCCTGCCCTGAACATCCCCCCCTCGCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57190:105..299-

>mRNA_P-wetherbeei_contig57190.1.1 ID=mRNA_P-wetherbeei_contig57190.1.1|Name=mRNA_P-wetherbeei_contig57190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig57190:105..299- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCGTCCTCTCCGGTTCGGTCAGCGAGCCGGTGTGGGCCCCGTCTTG
CGCGGTGCCTGCCGCGCATCCAGCCGTCGCCCCGACCCATTCGCTGGGGT
GCCATCGGCGTCGGATCGATGATCGGCTGGCCTTCGATCATGGGCTGGCC
GCCCTGATGCCTGGCCCTGCCCTGAACATCCCCCCCTCGCTGTAG
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