mRNA_P-wetherbeei_contig57190.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A6J4VH84_9CHLR (Mobile element protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VH84_9CHLR) HSP 1 Score: 61.2 bits (147), Expect = 1.600e-9 Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P + S+ +PVWA A+ AHPAV+PTH LGCHR R+ DR+ F+ +AAL+ G
Sbjct: 1 MPAVPVSLPDPVWAQFSALLPAHPAVSPTHPLGCHRPRVPDRVVFERVVAALVHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A418MM79_9ACTN (IS5 family transposase n=11 Tax=Micromonosporaceae TaxID=28056 RepID=A0A418MM79_9ACTN) HSP 1 Score: 59.3 bits (142), Expect = 8.250e-9 Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P L S+ EPVW A+ P PTH LGCHRRRI DR+ F+H +AAL+ G
Sbjct: 1 MPALPSSLFEPVWVQFAALWPEQPEFDPTHPLGCHRRRIPDRVVFEHVIAALVHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: UPI0003A81B0B (transposase n=1 Tax=Micromonospora sp. CNB394 TaxID=1169151 RepID=UPI0003A81B0B) HSP 1 Score: 58.5 bits (140), Expect = 1.320e-8 Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P L S+ EPVW A+ P P H LGCHRRRI DR+ F+H +AAL+ G
Sbjct: 1 MPALPSSLLEPVWVQFAALWPERPEFDPAHPLGCHRRRIPDRVVFEHAIAALVHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A511D803_9PSEU (Transposase n=1 Tax=Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 TaxID=1123024 RepID=A0A511D803_9PSEU) HSP 1 Score: 57.0 bits (136), Expect = 5.880e-8 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCA-VPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P+L S++EP+W A + + P PTH GCHRRRI DR+ FDH LAAL+ G
Sbjct: 1 MPLLPASLTEPLWVEFAALIGSDRPEFDPTHPWGCHRRRIPDRVVFDHVLAALVHG 56
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A6J4IFH0_9CHLR (Transposase n=1 Tax=uncultured Chloroflexia bacterium TaxID=1672391 RepID=A0A6J4IFH0_9CHLR) HSP 1 Score: 56.6 bits (135), Expect = 7.780e-8 Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P + S+ EP+WA + PA+ PTH LGCHRRR+ DR+ FDH + A++ G
Sbjct: 1 MPAVPVSLIEPIWAEFAMLLPDRPAMDPTHPLGCHRRRVPDRVVFDHVVDAMVHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A8J3P4S5_9ACTN (Uncharacterized protein n=1 Tax=Catellatospora coxensis TaxID=310354 RepID=A0A8J3P4S5_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 8.200e-8 Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P L S+ P+W A+ P PTH LGCHRRRI DR+ F+H + AL+ G
Sbjct: 1 MPALPSSLLNPIWVEFAALLPQRPEFDPTHPLGCHRRRIPDRVVFEHIIDALVHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A7W0XY41_9ACTN (IS5/IS1182 family transposase (Fragment) n=1 Tax=Propionibacteriaceae bacterium TaxID=2021380 RepID=A0A7W0XY41_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 1.450e-7 Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query: 28 EPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
EPVW + P V PTH LGCHRRR+ DR+ F H +AAL+ G
Sbjct: 3 EPVWEQFAVLLPERPVVVPTHPLGCHRRRVPDRVVFAHVVAALVHG 48
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A6J4UBX8_9CHLR (Putative transposase n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UBX8_9CHLR) HSP 1 Score: 55.8 bits (133), Expect = 1.480e-7 Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+PVL + EP+ A + HPA AP H LGCHR+RI DR+ FDH +AA++ G
Sbjct: 1 MPVLPVCLLEPIRARFVVLLPDHPAAAPAHPLGCHRKRIPDRVVFDHVVAAVVHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: UPI001F59DA98 (IS5 family transposase n=1 Tax=Saccharopolyspora sp. K220 TaxID=2926618 RepID=UPI001F59DA98) HSP 1 Score: 55.8 bits (133), Expect = 1.490e-7 Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+PVL S+ EP+W A+ P P H LGCHRRRI DR+ F+H + AL+ G
Sbjct: 1 MPVLPSSLIEPIWVQFAALLPDRPEFDPRHPLGCHRRRIPDRVVFEHVIDALIHG 55
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Match: A0A1Q5CDT8_9ACTN (Transposase n=1 Tax=Micromonospora sp. CB01531 TaxID=1718947 RepID=A0A1Q5CDT8_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 2.830e-7 Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAALMPG 165
+P L S+ E VW A+ P PTH LGCHRRRI DR+ F+H +AAL+ G
Sbjct: 1 MPALPSSLLEAVWVQFDALRGQLPEFDPTHPLGCHRRRIPDRVVFEHVIAALVHG 55 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57190.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig57190.1.1 >prot_P-wetherbeei_contig57190.1.1 ID=prot_P-wetherbeei_contig57190.1.1|Name=mRNA_P-wetherbeei_contig57190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp VPVLSGSVSEPVWAPSCAVPAAHPAVAPTHSLGCHRRRIDDRLAFDHGLAback to top mRNA from alignment at P-wetherbeei_contig57190:105..299- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig57190.1.1 ID=mRNA_P-wetherbeei_contig57190.1.1|Name=mRNA_P-wetherbeei_contig57190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig57190:105..299- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig57190:105..299- >mRNA_P-wetherbeei_contig57190.1.1 ID=mRNA_P-wetherbeei_contig57190.1.1|Name=mRNA_P-wetherbeei_contig57190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig57190:105..299- (Phaeothamnion wetherbeei SAG_119_79)back to top |