mRNA_P-wetherbeei_contig5717.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: A0A6H5JM24_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JM24_9PHAE) HSP 1 Score: 118 bits (295), Expect = 8.310e-24 Identity = 93/300 (31.00%), Postives = 132/300 (44.00%), Query Frame = 3
Query: 687 GGVLPCDVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGD---DRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGG--GGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSH------RPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
GGVLP D+ L +++R RA GD V V+L PV EW K A S G+ AL ++ + + D +G + AW DG + P ++ LWRP P+ GG GG R P N G LA LQP GKV+ ++E H+ G++V S + + D++V+F PTDRR+P + + R P NP + + + + W S LP G + G AG I ET LL +HG++HG FP L E + P
Sbjct: 95 GGVLPSDIFLESEKARNRAQEGDLVVVELAPVTEWMALK----------------------QAPARSSNEGLAEALESISITESSADEDETNGATSYPAW------DGPKVAPP-------VDGLWRPS-PKVAGGAQGGNR-----PENLCEA-GVLAAQGNLQPRGKVVFIMESAHREDHMGSLVWSSPLKVDGKLSDKDSYVMFHPTDRRVPHMLIARGELPSIFVDNPGAYANYIFMACVKGTWSATSKLPWGHNVRFVGEAGAIHAETKALLCQHGVNHGDFPRTVLRGLEAFLP 352
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI001403FE1F (DIS3-like exonuclease 2 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403FE1F) HSP 1 Score: 101 bits (251), Expect = 1.770e-18 Identity = 82/292 (28.08%), Postives = 125/292 (42.81%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPT--GVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTV-VPS------HRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
D+ + E+R RAL+GD V VQ+ P +W+ A ES G+D A + D++ C + L+ V+ L + S ++++ R+ +P+P N LQ KV+ +LER H R TG + PS P F++F P D R+P +H+P+ PPE A P F++ L R+ EWP ++ +P G + G AGDIE ET+ +L+E+GID FP + L Q P
Sbjct: 80 DIFVDGIENRNRALNGDVVVVQIYPREQWKKVTRAFDVPDMENISNPSLLGPALDMAATESCEELGGIDGA----ESHDEQHC----------KVLASVEKLAV-----SDKQVMSVT--------------RSHTPLPDNC------------LQKTAKVVFILERKHSRAATGHLRAPSCGQGTVASPKGPGPFILFSPLDHRVPRIHIPQSECPPEFLARPGDFVNTLFVARIT-EWPEDTKIPRGSLAKSLGEAGDIEPETEGMLIEYGIDFSEFPDDTLQNLPQNLP 325
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: S4RCW3_PETMA (Uncharacterized protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RCW3_PETMA) HSP 1 Score: 97.8 bits (242), Expect = 2.950e-18 Identity = 82/296 (27.70%), Postives = 125/296 (42.23%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWR--PQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEE----LLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTV-VPS------HRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
D+ + E+R RAL+GD V VQ+ P +W+ + S+ + S T + L S ++ L +DG ES +E +L + + + +G GG + + T LQ KV+ +LER H R TG + PS P F++F P D R+P +H+P+ PPE A P F++ L R+ EWP ++ +P G + G AGDIE ET+ +L+E+GID FP + L Q P
Sbjct: 56 DIFVDGIENRNRALNGDVVVVQIYPREQWKYTNETWQSTQTQKCYQNIIPASGQHLNRLPLYSPLTDLTDIL--------------YSSTESCEELGGIDGA------ESHDEQHCKVLASVEKLAVSDKQGWGGEAPYCGAAVMSVTRSHTPLPDNCLQKTAKVVFILERKHSRAATGHLRAPSCGQGTVASPKGPGPFILFSPLDHRVPRIHIPQSECPPEFLARPGDFVNTLFVARIT-EWPEDTKIPRGSLAKSLGEAGDIEPETEGMLIEYGIDFSEFPDDTLQNLPQNLP 330
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI0009E48F4B (DIS3-like exonuclease 2 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E48F4B) HSP 1 Score: 93.6 bits (231), Expect = 5.840e-16 Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = 3
Query: 1161 LQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSS----LPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
LQ KV+ ++E+ H RV TG + P RP E +F P D R+P + +PR PP P F + LL R++ WP SS L +G I G AG+I+ ET+ +LLE+GID GPF EALA Q P
Sbjct: 445 LQKTAKVVYIIEKKHSRVATGNLKPFTRPKECPDG-LFSPIDSRLPRIRIPREKCPPGFFDRPRDFQNTLLVARISS-WPETSSKDSFLAIGTIARRLGEAGEIDPETEGILLEYGIDSGPFSDEALACLPQETP 577
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI00077B0559 (DIS3-like exonuclease 2 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0559) HSP 1 Score: 91.7 bits (226), Expect = 2.070e-15 Identity = 88/289 (30.45%), Postives = 118/289 (40.83%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPG--HESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSS----LPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
DV+L SR RAL+GD VA+Q+LP W+ V E L V P G + DA + V+ L + P H+SP + P S G + VP LQ KV+ ++++ H RV +G + P P + F PTD R+P + +PR PP L P F + L R+ WP SS L +GEI G AG+IE ET+ +LLE+GID PF E LA Q P
Sbjct: 85 DVLLEGMLSRNRALNGDIVAMQILPEDNWK--------------------------VVREELTYNVII-----------PDVKGKNIEDA---IKCVEALTLSPSTEHQSPSAAISH----ESPASSHKDGSIDVNQVPEQF------------LQRTAKVVFIIDKKHTRVASGQLKPFPYPKDFPDGC-FSPTDSRLPRMRIPRKKCPPGLFDRPRDFDNTLFVARIVS-WPETSSRDSFLAMGEIARSLGEAGEIEPETEGILLEYGIDSRPFSEEVLACLPQESP 315
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI001CF0D70C (DIS3-like exonuclease 2 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0D70C) HSP 1 Score: 89.4 bits (220), Expect = 1.300e-14 Identity = 83/289 (28.72%), Postives = 117/289 (40.48%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPG--HESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSS----LPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
DV+L SR RAL+GD VA+Q+LP W+ V E G+ + ++ D C V+ L + P H+SP + + + G + VP LQ KV+ ++++ H RV +G + P P + F PTD R+P + +PR PP L P F + L R+ WP SS L +GEI G AG+IE ET+ +LLE+GID PF E LA Q P
Sbjct: 515 DVLLEGMLSRNRALNGDIVAMQILPEDNWK-------------------------VVREELTYNGIIPDVKGKNIEDAIKC---------------VEALTLSPSTEHQSPSAAISHESQASSHKD----GSIDVNQVPEQF------------LQRTAKVVFIIDKKHTRVASGQLKPFPYPKDFPDGC-FSPTDSRLPRMRIPRKKCPPGLFDRPRDFDNTLFVARIVS-WPETSSRDSFLAMGEIARSLGEAGEIEPETEGILLEYGIDSRPFSDEVLACLPQESP 745
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI001455B74E (DIS3-like exonuclease 2 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455B74E) HSP 1 Score: 87.8 bits (216), Expect = 3.440e-14 Identity = 82/319 (25.71%), Postives = 125/319 (39.18%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWR------------PQKGPSSXXXXXXXXXXXXXXXXXXXVAAESL-------PTGVDA-------ALAALDLGD----------DRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
D+ L +R RAL GD V V+ L ++W+ QK S + ESL PTG A AL D D +RP + + + D G L E + +++RL+ + +G +P Y Q + KV+ ++ER H R +G + P P ++ +F P+D R+P +++P P P F L R+ DEWP NS LG + G AG+IE ET+ +L+EHG+D+ F E +A + P
Sbjct: 252 DIFLNGLTARNRALEGDVVVVEFLHKSKWKLMEDDYQRYKQMGQKESKSKSTSKPKTEEAVLAKQLKDLKIESLQDKSAMNPTGEAAEITKDELALGKHDKADCLTFEKSSQSERPETENQASKGLDTKSQDEGGSLQ----EETDSIVKRLFPEEDKKEQG-----MDEEIPERFY------------QRLAKVVYIVERSHSRACSGKLRPP--PMKNAPNAVFSPSDYRVPRIYIPVSECPEGFLERPGDFESTLFIARI-DEWPYNSPFALGHLHRSLGEAGEIEPETEGMLMEHGVDYSDFSDEVIACLPKNLP 546
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: A0A3P9N1Q0_POERE (DIS3-like exonuclease 2 n=7 Tax=Poeciliinae TaxID=586240 RepID=A0A3P9N1Q0_POERE) HSP 1 Score: 87.8 bits (216), Expect = 3.460e-14 Identity = 75/276 (27.17%), Postives = 111/276 (40.22%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDT-FVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEAL 1529
D+ L +R RAL+GD V +Q+LP +W+ K + E +P D R P + R+ DV S + E L P PR A++ + LQ KV+ ++ER H R +TG H F D F +F P D R+P ++V P E ANP F LL R+ D WP +S+ G + G+AG+IE ET+ +++E+ +D FP E +
Sbjct: 322 DIFLDGVVARNRALNGDIVVIQILPREQWKVVKSDTDCDGTSESD-----------TQTEHVPRTAQKGAGHGPSPDVRVEDQSSDPEELLRKRPDV----------SCADTGEYLEDPSTPR--------ANADI----------------LQKTAKVVYIVERKHSRAVTG-----HLKFLPDKPFAMFSPVDHRVPRINVKLDDCPVEFRANPGDFAKTLLICRITD-WPADSNFAEGRLAKTLGQAGEIEPETEGIMIEYNVDFSEFPQEVM 546
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: A0A087XQ14_POEFO (DIS3-like exonuclease 2 n=5 Tax=Poeciliinae TaxID=586240 RepID=A0A087XQ14_POEFO) HSP 1 Score: 87.8 bits (216), Expect = 3.460e-14 Identity = 77/276 (27.90%), Postives = 113/276 (40.94%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDT-FVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEAL 1529
D+ L +R RAL+GD V +Q+LP +W+ K S A +S G + D D P + R+ DV S + E L P P+ A++ + LQ KV+ ++ER H R +TG H F D F +F P D R+P ++V P E ANP F LL R+ D WP +S+ G + G+AG+IE ET+ +++E+ +D FP E L
Sbjct: 322 DIFLDGVVARNRALNGDIVVIQILPQEQWKVVK---SDTDCDGTSESDTQTEHVPRTAQKSAGHGPSPDVKVEDQSSD--------PEELLRKRPDV----------SCADTGEHLEDPSTPQ--------ANADI----------------LQKTAKVVYIVERKHSRAVTG-----HLKFLPDKPFAMFSPVDHRVPRINVKLDDCPMEFRANPGDFAKTLLICRITD-WPVDSNFAEGRLAKTLGQAGEIEPETEGIMIEYNVDFSEFPQEVL 546
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI0018F6C355 (DIS3-like exonuclease 2 isoform X1 n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6C355) HSP 1 Score: 87.0 bits (214), Expect = 6.330e-14 Identity = 78/279 (27.96%), Postives = 121/279 (43.37%), Query Frame = 3
Query: 705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTG--VDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVP-SHRPFES-DTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEAL 1529
D+ + SR RAL+GD V V+LLP +W+ P V E+LPT V + D+ + D L ND L V + + SP E R + G + P++ + LQ GKV+ ++E+ H R +TG + P S + E + F +F P D R+P + +P P ++ A PA + L R+ D W +S+ G + G+AG+IE ET+ +L+E+ +D FP E L
Sbjct: 397 DIFIDGIISRNRALNGDVVVVKLLPKEKWKVII-PEGHDSETNAVAQSDVLGEVNNVNFENLPTQDKVKVLETSPDVIIEEQYDDSLDENDNGTSLKIVLDGSVGEINFSPSEKAAGFSRIQPVEKSGTRTQTSRQEKPSDMVVNDSRIHPDRFLQKTGKVVYIVEKKHSRAVTGFIKPLSDKNSELYNEFFMFSPVDHRVPRILIPSEDCPKDIMARPADYGSVLFICRIVD-WRDDSNFADGHLTKSLGQAGEIEPETEGILIEYDVDFSDFPDEVL 673 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5717.1.1 >prot_P-wetherbeei_contig5717.1.1 ID=prot_P-wetherbeei_contig5717.1.1|Name=mRNA_P-wetherbeei_contig5717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp MYPVQRVYPVLHCHSLRRPVAQGGVLPCDVVLRDQESRGRALHGDFVAVQback to top mRNA from alignment at P-wetherbeei_contig5717:2..2227- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5717.1.1 ID=mRNA_P-wetherbeei_contig5717.1.1|Name=mRNA_P-wetherbeei_contig5717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2226bp|location=Sequence derived from alignment at P-wetherbeei_contig5717:2..2227- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5717:2..2227- >mRNA_P-wetherbeei_contig5717.1.1 ID=mRNA_P-wetherbeei_contig5717.1.1|Name=mRNA_P-wetherbeei_contig5717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig5717:2..2227- (Phaeothamnion wetherbeei SAG_119_79)back to top |