mRNA_P-wetherbeei_contig5717.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5717.1.1
Unique NamemRNA_P-wetherbeei_contig5717.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: A0A6H5JM24_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JM24_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 8.310e-24
Identity = 93/300 (31.00%), Postives = 132/300 (44.00%), Query Frame = 3
Query:  687 GGVLPCDVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGD---DRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGG--GGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSH------RPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            GGVLP D+ L  +++R RA  GD V V+L PV EW   K                         A S   G+  AL ++ + +   D    +G +   AW      DG  + P        ++ LWRP  P+  GG  GG R     P N     G LA    LQP GKV+ ++E  H+    G++V S       +  + D++V+F PTDRR+P + + R   P     NP  + + +    +   W   S LP G    + G AG I  ET  LL +HG++HG FP   L   E + P
Sbjct:   95 GGVLPSDIFLESEKARNRAQEGDLVVVELAPVTEWMALK----------------------QAPARSSNEGLAEALESISITESSADEDETNGATSYPAW------DGPKVAPP-------VDGLWRPS-PKVAGGAQGGNR-----PENLCEA-GVLAAQGNLQPRGKVVFIMESAHREDHMGSLVWSSPLKVDGKLSDKDSYVMFHPTDRRVPHMLIARGELPSIFVDNPGAYANYIFMACVKGTWSATSKLPWGHNVRFVGEAGAIHAETKALLCQHGVNHGDFPRTVLRGLEAFLP 352          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI001403FE1F (DIS3-like exonuclease 2 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403FE1F)

HSP 1 Score: 101 bits (251), Expect = 1.770e-18
Identity = 82/292 (28.08%), Postives = 125/292 (42.81%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPT--GVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTV-VPS------HRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            D+ +   E+R RAL+GD V VQ+ P  +W+                           A ES     G+D A    +  D++ C          + L+ V+ L +     S ++++                 R+ +P+P N             LQ   KV+ +LER H R  TG +  PS        P     F++F P D R+P +H+P+   PPE  A P  F++ L   R+  EWP ++ +P G +    G AGDIE ET+ +L+E+GID   FP + L    Q  P
Sbjct:   80 DIFVDGIENRNRALNGDVVVVQIYPREQWKKVTRAFDVPDMENISNPSLLGPALDMAATESCEELGGIDGA----ESHDEQHC----------KVLASVEKLAV-----SDKQVMSVT--------------RSHTPLPDNC------------LQKTAKVVFILERKHSRAATGHLRAPSCGQGTVASPKGPGPFILFSPLDHRVPRIHIPQSECPPEFLARPGDFVNTLFVARIT-EWPEDTKIPRGSLAKSLGEAGDIEPETEGMLIEYGIDFSEFPDDTLQNLPQNLP 325          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: S4RCW3_PETMA (Uncharacterized protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RCW3_PETMA)

HSP 1 Score: 97.8 bits (242), Expect = 2.950e-18
Identity = 82/296 (27.70%), Postives = 125/296 (42.23%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWR--PQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEE----LLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTV-VPS------HRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            D+ +   E+R RAL+GD V VQ+ P  +W+   +   S+                   +   S  T +   L               S  ++   L  +DG       ES +E    +L  + +  +   +G GG          + +   T      LQ   KV+ +LER H R  TG +  PS        P     F++F P D R+P +H+P+   PPE  A P  F++ L   R+  EWP ++ +P G +    G AGDIE ET+ +L+E+GID   FP + L    Q  P
Sbjct:   56 DIFVDGIENRNRALNGDVVVVQIYPREQWKYTNETWQSTQTQKCYQNIIPASGQHLNRLPLYSPLTDLTDIL--------------YSSTESCEELGGIDGA------ESHDEQHCKVLASVEKLAVSDKQGWGGEAPYCGAAVMSVTRSHTPLPDNCLQKTAKVVFILERKHSRAATGHLRAPSCGQGTVASPKGPGPFILFSPLDHRVPRIHIPQSECPPEFLARPGDFVNTLFVARIT-EWPEDTKIPRGSLAKSLGEAGDIEPETEGMLIEYGIDFSEFPDDTLQNLPQNLP 330          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI0009E48F4B (DIS3-like exonuclease 2 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E48F4B)

HSP 1 Score: 93.6 bits (231), Expect = 5.840e-16
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = 3
Query: 1161 LQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSS----LPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            LQ   KV+ ++E+ H RV TG + P  RP E     +F P D R+P + +PR   PP     P  F + LL  R++  WP  SS    L +G I    G AG+I+ ET+ +LLE+GID GPF  EALA   Q  P
Sbjct:  445 LQKTAKVVYIIEKKHSRVATGNLKPFTRPKECPDG-LFSPIDSRLPRIRIPREKCPPGFFDRPRDFQNTLLVARISS-WPETSSKDSFLAIGTIARRLGEAGEIDPETEGILLEYGIDSGPFSDEALACLPQETP 577          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI00077B0559 (DIS3-like exonuclease 2 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0559)

HSP 1 Score: 91.7 bits (226), Expect = 2.070e-15
Identity = 88/289 (30.45%), Postives = 118/289 (40.83%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPG--HESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSS----LPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            DV+L    SR RAL+GD VA+Q+LP   W+                          V  E L   V             P   G +  DA   +  V+ L + P   H+SP   +        P S    G    + VP               LQ   KV+ ++++ H RV +G + P   P +      F PTD R+P + +PR   PP L   P  F + L   R+   WP  SS    L +GEI    G AG+IE ET+ +LLE+GID  PF  E LA   Q  P
Sbjct:   85 DVLLEGMLSRNRALNGDIVAMQILPEDNWK--------------------------VVREELTYNVII-----------PDVKGKNIEDA---IKCVEALTLSPSTEHQSPSAAISH----ESPASSHKDGSIDVNQVPEQF------------LQRTAKVVFIIDKKHTRVASGQLKPFPYPKDFPDGC-FSPTDSRLPRMRIPRKKCPPGLFDRPRDFDNTLFVARIVS-WPETSSRDSFLAMGEIARSLGEAGEIEPETEGILLEYGIDSRPFSEEVLACLPQESP 315          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI001CF0D70C (DIS3-like exonuclease 2 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0D70C)

HSP 1 Score: 89.4 bits (220), Expect = 1.300e-14
Identity = 83/289 (28.72%), Postives = 117/289 (40.48%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPG--HESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSS----LPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            DV+L    SR RAL+GD VA+Q+LP   W+                          V  E    G+   +   ++ D   C               V+ L + P   H+SP   +    +    +     G    + VP               LQ   KV+ ++++ H RV +G + P   P +      F PTD R+P + +PR   PP L   P  F + L   R+   WP  SS    L +GEI    G AG+IE ET+ +LLE+GID  PF  E LA   Q  P
Sbjct:  515 DVLLEGMLSRNRALNGDIVAMQILPEDNWK-------------------------VVREELTYNGIIPDVKGKNIEDAIKC---------------VEALTLSPSTEHQSPSAAISHESQASSHKD----GSIDVNQVPEQF------------LQRTAKVVFIIDKKHTRVASGQLKPFPYPKDFPDGC-FSPTDSRLPRMRIPRKKCPPGLFDRPRDFDNTLFVARIVS-WPETSSRDSFLAMGEIARSLGEAGEIEPETEGILLEYGIDSRPFSDEVLACLPQESP 745          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI001455B74E (DIS3-like exonuclease 2 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455B74E)

HSP 1 Score: 87.8 bits (216), Expect = 3.440e-14
Identity = 82/319 (25.71%), Postives = 125/319 (39.18%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWR------------PQKGPSSXXXXXXXXXXXXXXXXXXXVAAESL-------PTGVDA-------ALAALDLGD----------DRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEALAAFEQYKP 1553
            D+ L    +R RAL GD V V+ L  ++W+             QK   S                   +  ESL       PTG  A       AL   D  D          +RP  +  +      +  D  G L     E  + +++RL+     + +G         +P   Y            Q + KV+ ++ER H R  +G + P   P ++    +F P+D R+P +++P    P      P  F   L   R+ DEWP NS   LG +    G AG+IE ET+ +L+EHG+D+  F  E +A   +  P
Sbjct:  252 DIFLNGLTARNRALEGDVVVVEFLHKSKWKLMEDDYQRYKQMGQKESKSKSTSKPKTEEAVLAKQLKDLKIESLQDKSAMNPTGEAAEITKDELALGKHDKADCLTFEKSSQSERPETENQASKGLDTKSQDEGGSLQ----EETDSIVKRLFPEEDKKEQG-----MDEEIPERFY------------QRLAKVVYIVERSHSRACSGKLRPP--PMKNAPNAVFSPSDYRVPRIYIPVSECPEGFLERPGDFESTLFIARI-DEWPYNSPFALGHLHRSLGEAGEIEPETEGMLMEHGVDYSDFSDEVIACLPKNLP 546          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: A0A3P9N1Q0_POERE (DIS3-like exonuclease 2 n=7 Tax=Poeciliinae TaxID=586240 RepID=A0A3P9N1Q0_POERE)

HSP 1 Score: 87.8 bits (216), Expect = 3.460e-14
Identity = 75/276 (27.17%), Postives = 111/276 (40.22%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDT-FVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEAL 1529
            D+ L    +R RAL+GD V +Q+LP  +W+  K  +                       E +P             D R       P +  R+  DV          S  +  E L  P  PR        A++ +                LQ   KV+ ++ER H R +TG     H  F  D  F +F P D R+P ++V     P E  ANP  F   LL  R+ D WP +S+   G +    G+AG+IE ET+ +++E+ +D   FP E +
Sbjct:  322 DIFLDGVVARNRALNGDIVVIQILPREQWKVVKSDTDCDGTSESD-----------TQTEHVPRTAQKGAGHGPSPDVRVEDQSSDPEELLRKRPDV----------SCADTGEYLEDPSTPR--------ANADI----------------LQKTAKVVYIVERKHSRAVTG-----HLKFLPDKPFAMFSPVDHRVPRINVKLDDCPVEFRANPGDFAKTLLICRITD-WPADSNFAEGRLAKTLGQAGEIEPETEGIMIEYNVDFSEFPQEVM 546          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: A0A087XQ14_POEFO (DIS3-like exonuclease 2 n=5 Tax=Poeciliinae TaxID=586240 RepID=A0A087XQ14_POEFO)

HSP 1 Score: 87.8 bits (216), Expect = 3.460e-14
Identity = 77/276 (27.90%), Postives = 113/276 (40.94%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTGVDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVPSHRPFESDT-FVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEAL 1529
            D+ L    +R RAL+GD V +Q+LP  +W+  K   S                    A +S   G    +   D   D        P +  R+  DV          S  +  E L  P  P+        A++ +                LQ   KV+ ++ER H R +TG     H  F  D  F +F P D R+P ++V     P E  ANP  F   LL  R+ D WP +S+   G +    G+AG+IE ET+ +++E+ +D   FP E L
Sbjct:  322 DIFLDGVVARNRALNGDIVVIQILPQEQWKVVK---SDTDCDGTSESDTQTEHVPRTAQKSAGHGPSPDVKVEDQSSD--------PEELLRKRPDV----------SCADTGEHLEDPSTPQ--------ANADI----------------LQKTAKVVYIVERKHSRAVTG-----HLKFLPDKPFAMFSPVDHRVPRINVKLDDCPMEFRANPGDFAKTLLICRITD-WPVDSNFAEGRLAKTLGQAGEIEPETEGIMIEYNVDFSEFPQEVL 546          
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Match: UPI0018F6C355 (DIS3-like exonuclease 2 isoform X1 n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6C355)

HSP 1 Score: 87.0 bits (214), Expect = 6.330e-14
Identity = 78/279 (27.96%), Postives = 121/279 (43.37%), Query Frame = 3
Query:  705 DVVLRDQESRGRALHGDFVAVQLLPVAEWRPQKGPSSXXXXXXXXXXXXXXXXXXXVAAESLPTG--VDAALAALDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLPRSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLTGTVVP-SHRPFES-DTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCLLTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPAEAL 1529
            D+ +    SR RAL+GD V V+LLP  +W+    P                     V  E+LPT   V     + D+  +    D L  ND    L  V    +   + SP E      R +     G     +    P++       +     LQ  GKV+ ++E+ H R +TG + P S +  E  + F +F P D R+P + +P    P ++ A PA +   L   R+ D W  +S+   G +    G+AG+IE ET+ +L+E+ +D   FP E L
Sbjct:  397 DIFIDGIISRNRALNGDVVVVKLLPKEKWKVII-PEGHDSETNAVAQSDVLGEVNNVNFENLPTQDKVKVLETSPDVIIEEQYDDSLDENDNGTSLKIVLDGSVGEINFSPSEKAAGFSRIQPVEKSGTRTQTSRQEKPSDMVVNDSRIHPDRFLQKTGKVVYIVEKKHSRAVTGFIKPLSDKNSELYNEFFMFSPVDHRVPRILIPSEDCPKDIMARPADYGSVLFICRIVD-WRDDSNFADGHLTKSLGQAGEIEPETEGILIEYDVDFSDFPDEVL 673          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5717.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM24_9PHAE8.310e-2431.00RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI001403FE1F1.770e-1828.08DIS3-like exonuclease 2 isoform X1 n=2 Tax=Petromy... [more]
S4RCW3_PETMA2.950e-1827.70Uncharacterized protein n=1 Tax=Petromyzon marinus... [more]
UPI0009E48F4B5.840e-1641.48DIS3-like exonuclease 2 isoform X1 n=2 Tax=Orbicel... [more]
UPI00077B05592.070e-1530.45DIS3-like exonuclease 2 n=1 Tax=Acropora digitifer... [more]
UPI001CF0D70C1.300e-1428.72DIS3-like exonuclease 2 n=1 Tax=Acropora millepora... [more]
UPI001455B74E3.440e-1425.71DIS3-like exonuclease 2 n=1 Tax=Asterias rubens Ta... [more]
A0A3P9N1Q0_POERE3.460e-1427.17DIS3-like exonuclease 2 n=7 Tax=Poeciliinae TaxID=... [more]
A0A087XQ14_POEFO3.460e-1427.90DIS3-like exonuclease 2 n=5 Tax=Poeciliinae TaxID=... [more]
UPI0018F6C3556.330e-1427.96DIS3-like exonuclease 2 isoform X1 n=2 Tax=Scylior... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5717contigP-wetherbeei_contig5717:2..2227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBE7
PFAMsRNB,Rrp44_CSD1
Model size1977
Max annot lvl2759|Eukaryota
KEGG koko:K18758
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000175,GO:0000178,GO:0000278,GO:0000280,GO:0000287,GO:0000291,GO:0000819,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010586,GO:0010587,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0019827,GO:0022402,GO:0022613,GO:0032501,GO:0032502,GO:0032991,GO:0034427,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035770,GO:0036464,GO:0042127,GO:0042254,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051276,GO:0051304,GO:0051306,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098727,GO:0098813,GO:0140014,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903047,GO:1905354,GO:1990074,GO:1990904
Exons2
Evalue1.55e-26
EggNOG OGsCOG0557@1|root,KOG2102@2759|Eukaryota
Description3'-5'-exoribonuclease activity
Cds size1236
COG categoryK
BRITEko00000,ko01000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.4885075-UTR-P-wetherbeei_contig5717:1..1221683186848.4885075-UTR-P-wetherbeei_contig5717:1..122Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5717 2..122 -
1683186848.5208993-UTR-P-wetherbeei_contig5717:1607..22271683186848.5208993-UTR-P-wetherbeei_contig5717:1607..2227Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5717 1608..2227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.5006766-CDS-P-wetherbeei_contig5717:122..7701683186848.5006766-CDS-P-wetherbeei_contig5717:122..770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5717 123..770 -
1683186848.5108323-CDS-P-wetherbeei_contig5717:1019..16071683186848.5108323-CDS-P-wetherbeei_contig5717:1019..1607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5717 1020..1607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5717.1.1prot_P-wetherbeei_contig5717.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5717 123..1607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5717.1.1

>prot_P-wetherbeei_contig5717.1.1 ID=prot_P-wetherbeei_contig5717.1.1|Name=mRNA_P-wetherbeei_contig5717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MYPVQRVYPVLHCHSLRRPVAQGGVLPCDVVLRDQESRGRALHGDFVAVQ
LLPVAEWRPQKGPSSAPKAANGGGNNGGNGIGGGVAAESLPTGVDAALAA
LDLGDDRPCPDGLSPNDAWRRLSDVDGLLMPPGHESPEELLERLWRPRLP
RSRGGGGGRASSPVPANTYSTMGTLALSCGLQPVGKVIGVLERGHKRVLT
GTVVPSHRPFESDTFVIFRPTDRRMPLVHVPRHVWPPELAANPARFLDCL
LTVRLADEWPPNSSLPLGEIESWGGRAGDIEYETDQLLLEHGIDHGPFPA
EALAAFEQYKPLPGLGPAAAASAAVDAVFATADAPNGGTGANGFGANDAR
SGRTAAAAAPALVLPVAELAALDREDLRRLVAFTIDPSSTKVWHPSFLLV
VHPPEVQSQNT*
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mRNA from alignment at P-wetherbeei_contig5717:2..2227-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5717.1.1 ID=mRNA_P-wetherbeei_contig5717.1.1|Name=mRNA_P-wetherbeei_contig5717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2226bp|location=Sequence derived from alignment at P-wetherbeei_contig5717:2..2227- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGAATCCTCGCGTCTGGGATGCTCATTCGTGGGCGCATTCGCTGTCT TCCGCCACCCGCTAACGCCGCCTTTGTAACTGCCGAGGTGAGTATGAGAA GTGAGAGTTTTCACTGTTGTAGTTCTCTGCGGGCTGCGAAGATTGCTCTT GGTCGTTTGACTGGGGACGTGGGAATCAACACGCGCCGAACAGGCAGCCC CGATGAGAGGGGCCCTCATGGTTGGACCGGCCGTCTTTTTCCTTTGCTTA CGATTCACACTTCGGGAGGCGTTCATGGAGCTTTTCCATGCGCTGCTTCC TGGCCCGTGTTGTTCTTTCTCCTGTGGTATGAGCCTCTCTTCACAAAGCT CGAGGGGATTCCTTTTGAAAGTGAGGGTCGCTGTTACTATACACGTCTCT TCGAGATTGTGGCCGAGTACGCCCCATCTTCCCAATTCCTGTTTAACCCG GATGTCGTGATAGCACTAAGGTGGTGTTTGAGGCAGTTGTTTCGCGTTAG GAGGATCAATCCCTGCATCTGTCAATTGTACCCTCGAATGCCAGGATAGC TGTTTTACAGTTGTAGTCATCAGAAGGCTTTTCGTTGCAGTTAAAGCGTA TCACAGTGGTCGTGACTTAAATGTACCCCGTACAGAGAGTCTACCCTGTC CTCCATTGCCATTCCCTCCGCCGCCCCGTTGCGCAGGGCGGCGTGCTGCC GTGCGACGTCGTGCTCCGGGACCAAGAGAGCCGCGGCCGTGCCCTCCATG GGGACTTTGTCGCTGTGCAGCTGCTGCCGGTGGCGGAGTGGCGGCCCCAG AAGGGCCCCAGCTCTGCGCCCAAAGCGGCCAACGGCGGCGGCAACAACGG CGGCAACGGCATTGGCGGCGGCGTTGCTGCGGAATCCCTGCCGACGGGTG TGGATGCAGCGCTAGCGGCGCTCGACCTCGGCGACGACCGGCCGTGTCCC GACGGTTTGTCGCCGAACGACGCGTGGCGGCGCCTCTCCGACGTTGACGG CCTCCTGATGCCGCCGGGCCACGAGTCGCCGGAGGAGCTGCTCGAGCGGC TATGGAGGCCGCGCCTGCCCCGGAGCCGTGGCGGCGGCGGCGGCAGGGCG TCGTCACCGGTGCCGGCCAACACGTACAGCACAATGGGCACCCTGGCGCT GTCGTGCGGCCTGCAGCCGGTCGGGAAGGTGATTGGCGTTTTGGAGCGGG GGCACAAGGTGAGTGAGAAAGACGGAAGCAGAAGAGCAGCGTCAAGTTCA ACGGTTTTAGAGTGGCTTATGCCATCCTTTCCCGGCTAAACTGCTTCAGT CTTAGACTTTTTCGCACGTTTTACAGTTCCAAGGCTGACCCTGTTCACTG CTTAGATTCCGCCACCGCGGCCGCCGCCATTTCACTCCTTCCACGCGCCG TGCACGCTGTACATCTCTTCGCCGCCTCTTGTCGTCAACGCCGTCCCTTT TCTGCAGCGCGTCTTGACGGGAACCGTGGTGCCGTCGCACCGGCCCTTTG AGAGCGACACTTTCGTCATATTCCGCCCGACGGACCGCCGTATGCCGCTC GTGCACGTCCCGCGGCATGTTTGGCCGCCGGAGCTGGCCGCCAACCCGGC CCGCTTCCTGGACTGCCTGCTGACGGTGCGGCTGGCGGACGAGTGGCCGC CGAACTCGAGCCTGCCGCTGGGAGAGATTGAGTCGTGGGGTGGCCGCGCC GGCGACATCGAGTACGAGACGGACCAGCTGCTGCTGGAACACGGTATCGA CCACGGGCCCTTCCCCGCCGAGGCGCTGGCGGCCTTCGAGCAGTACAAGC CGCTGCCGGGGCTAGGCCCCGCCGCCGCGGCCTCCGCCGCCGTCGACGCC GTATTCGCCACAGCCGACGCCCCCAATGGCGGCACCGGCGCCAACGGTTT TGGTGCCAATGACGCCAGGAGCGGCAGGACGGCGGCTGCTGCGGCACCGG CGCTAGTGCTGCCGGTGGCGGAGTTGGCGGCGCTGGACCGGGAGGACCTA CGGCGGCTGGTGGCCTTTACCATCGACCCGAGCTCGACGAAGGTCTGGCA CCCTTCTTTCCTTCTTGTTGTGCACCCTCCAGAAGTCCAGTCCCAAAACA CCTGAAAAATCCATCCATTGCGTCGTTTGATTTAGATTCAGATTCTTTGG TGCGCTTTCTTCGCCTAGCAGGACATTGACGACGCGCTGCACGTGTCTCT TATCGGCGGCGGGGTGGTGGAGGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5717:2..2227-

>mRNA_P-wetherbeei_contig5717.1.1 ID=mRNA_P-wetherbeei_contig5717.1.1|Name=mRNA_P-wetherbeei_contig5717.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig5717:2..2227- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCCCGTACAGAGAGTCTACCCTGTCCTCCATTGCCATTCCCTCCG
CCGCCCCGTTGCGCAGGGCGGCGTGCTGCCGTGCGACGTCGTGCTCCGGG
ACCAAGAGAGCCGCGGCCGTGCCCTCCATGGGGACTTTGTCGCTGTGCAG
CTGCTGCCGGTGGCGGAGTGGCGGCCCCAGAAGGGCCCCAGCTCTGCGCC
CAAAGCGGCCAACGGCGGCGGCAACAACGGCGGCAACGGCATTGGCGGCG
GCGTTGCTGCGGAATCCCTGCCGACGGGTGTGGATGCAGCGCTAGCGGCG
CTCGACCTCGGCGACGACCGGCCGTGTCCCGACGGTTTGTCGCCGAACGA
CGCGTGGCGGCGCCTCTCCGACGTTGACGGCCTCCTGATGCCGCCGGGCC
ACGAGTCGCCGGAGGAGCTGCTCGAGCGGCTATGGAGGCCGCGCCTGCCC
CGGAGCCGTGGCGGCGGCGGCGGCAGGGCGTCGTCACCGGTGCCGGCCAA
CACGTACAGCACAATGGGCACCCTGGCGCTGTCGTGCGGCCTGCAGCCGG
TCGGGAAGGTGATTGGCGTTTTGGAGCGGGGGCACAAGCGCGTCTTGACG
GGAACCGTGGTGCCGTCGCACCGGCCCTTTGAGAGCGACACTTTCGTCAT
ATTCCGCCCGACGGACCGCCGTATGCCGCTCGTGCACGTCCCGCGGCATG
TTTGGCCGCCGGAGCTGGCCGCCAACCCGGCCCGCTTCCTGGACTGCCTG
CTGACGGTGCGGCTGGCGGACGAGTGGCCGCCGAACTCGAGCCTGCCGCT
GGGAGAGATTGAGTCGTGGGGTGGCCGCGCCGGCGACATCGAGTACGAGA
CGGACCAGCTGCTGCTGGAACACGGTATCGACCACGGGCCCTTCCCCGCC
GAGGCGCTGGCGGCCTTCGAGCAGTACAAGCCGCTGCCGGGGCTAGGCCC
CGCCGCCGCGGCCTCCGCCGCCGTCGACGCCGTATTCGCCACAGCCGACG
CCCCCAATGGCGGCACCGGCGCCAACGGTTTTGGTGCCAATGACGCCAGG
AGCGGCAGGACGGCGGCTGCTGCGGCACCGGCGCTAGTGCTGCCGGTGGC
GGAGTTGGCGGCGCTGGACCGGGAGGACCTACGGCGGCTGGTGGCCTTTA
CCATCGACCCGAGCTCGACGAAGGTCTGGCACCCTTCTTTCCTTCTTGTT
GTGCACCCTCCAGAAGTCCAGTCCCAAAACACCTGA
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