mRNA_P-wetherbeei_contig5702.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5702.1.1
Unique NamemRNA_P-wetherbeei_contig5702.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.300e-81
Identity = 130/143 (90.91%), Postives = 136/143 (95.10%), Query Frame = 1
Query:    1 CVMEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIQDVFNF 429
            CVM+IAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITG+DM RIHAAA +V +LISKAPVNVNSAGVEDEV SHMI+CPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL VAMI+DV  F
Sbjct:   34 CVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITF 176          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 243 bits (619), Expect = 2.760e-72
Identity = 127/161 (78.88%), Postives = 137/161 (85.09%), Query Frame = 1
Query:    1 CVMEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMK------------------VIVSGIPQSVRLAVAMIQDVFNF 429
            CV++IAPEVVGWVIGRSG+HIKEMKHRSGCGMWVDQKDLKLYITG+DM RIH AA MVA+LISKAPVN+N+AGV+DEVVS MIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMM                   VIVSGI QSVRLAVAMI+DVF+F
Sbjct:  301 CVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMXXXXXXXXXXXXXXXXXXXVIVSGIAQSVRLAVAMIEDVFSF 461          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.540e-67
Identity = 123/166 (74.10%), Postives = 130/166 (78.31%), Query Frame = 1
Query:   22 EVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAP------------------------------VNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIQDVFNF 429
            EVVGWVIGRSG+HIKEMKHRSGCGMWVDQKDLKLYITG+DM RIH AA MVA+LISK P                              VNV++AGVEDEVVS M+DCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMI+DVF F
Sbjct:  318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIEDVFTF 483          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.240e-61
Identity = 106/120 (88.33%), Postives = 113/120 (94.17%), Query Frame = 1
Query:   70 MKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIQDVFNF 429
            ++HRSGCGMWVDQKDLKLYITG+DM RIHAAA +V +LISKAPVNVNSAGVEDEV SHMI+CPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL VAMI+DV  F
Sbjct:   59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITF 178          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.480e-34
Identity = 66/142 (46.48%), Postives = 97/142 (68.31%), Query Frame = 1
Query:    1 CVMEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIQDVFN 426
            C M+I  EVVGWVIG+SG+ IK++K+++GC MWVDQ+ LKL ITG D+  +  AA+ V   ++ AP+    AG  +  V+  +DCPPHL+ +L  R  +TI RI +E+RA VV+N+KM +VIV G P +V++A   +Q +  
Sbjct:   53 CDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIK---AGAVEAAVTRSLDCPPHLLDVLGDR--ATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIIT 189          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.380e-30
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 CVMEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIQDV 420
            C M+I  EVVGWVIGR+G+ IK++K+++GC MWVDQ+ LKL ITG D+  +  AA+ V   ++ AP+    AG  +  V+  ++CPPHL+ +L  R  +TI RI +E+RA VV+N+KM +VI+ G   +V +A   IQ +
Sbjct:   68 CDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIK---AGAVEAAVTRSLECPPHLLDMLGDR--ATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTI 202          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.880e-27
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 CVMEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLA 399
            C M+I  EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA+ V   ++ AP+    AG  +  V+  I+CPP L+  L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV LA
Sbjct:   64 CDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLA 191          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A7S2UTA3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTA3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.230e-14
Identity = 45/149 (30.20%), Postives = 82/149 (55.03%), Query Frame = 1
Query:    7 MEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQ-----KDLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQK----MMKVIVSGIPQSVRLAVAMIQDVFN 426
            ++  P VVG VIG+ G  I+E+  +S C + VDQ     ++ K+ + G     +    ++V E+I+ A             ++H+IDCPP ++G +IGRGG TI+ +++ S A + ++Q       KV++ G  Q++  A+ ++  VF+
Sbjct:  132 VDCPPTVVGKVIGKGGETIRELMQKSSCHIQVDQNFPPGENRKVLVKGQPQF-VEMGKKLVEEVINSAAEFPPEGEKGPGWITHLIDCPPQMVGRVIGRGGETIRELQQRSGARIQVDQSGAPNEKKVVIQGTQQTIDAAIKLVDQVFD 279          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A7S0N6L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0N6L6_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 8.040e-13
Identity = 45/148 (30.41%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    7 MEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQK---DLKLYITGSDMGRIHAAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM-----MKVIVSGIPQSVRLAVAMIQDVFN 426
            +  AP+ VG +IGR+G+ IK+++ R+GC + VD K   D  ++I+G       AA      L+ +   N N +    +     ++CPP ++G +IGRGG TI+ ++  S A+++++Q        ++ +SG  +SV  A  M+ D+ +
Sbjct:  116 LHAAPDKVGRIIGRAGSTIKDLETRTGCRIQVDHKAEGDKPVHISGHP-----AAVEQCKALVLEVMENENPSHAPGDS-QRTLECPPGIVGRIIGRGGETIRSLQSASGAHILVDQNFPPEVNRQITISGKAESVERAYKMVMDLIS 257          
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.860e-12
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 1
Query:    4 VMEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKD-----LKLYITGSDMGRIHAAARMVAELISKAPVNV-NSAGVEDEVVSH----------------MIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM-----MKVIVSGIPQSVRLAVAMIQDV 420
            +++I P VVGWVIG++GA I +++ ++   MW+DQ        KL+I G+   ++ AA   V  L+  APVN    A +  + + H                 I CP  L+G LIG+ G+ IK IK  S ANV + Q         V ++G  + V LA  ++ +V
Sbjct:  634 MLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQ-QVEAAIAEVEFLMKSAPVNTPRPARMGPKQLPHGGGLPPGHPDLNYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEV 798          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5702.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT5_ECTSI2.300e-8190.91SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA2.760e-7278.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJQ9_9STRA1.540e-6774.10SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JET1_9PHAE1.240e-6188.33SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZGS8_9STRA4.480e-3446.48Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA1.380e-3045.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQB1_ECTSI1.880e-2747.37SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2UTA3_9STRA1.230e-1430.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0N6L6_9CHLO8.040e-1330.41Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6H5KMM6_9PHAE1.860e-1232.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5702contigP-wetherbeei_contig5702:2383..2811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LI19
PFAMsKH_1
Model size429
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.28e-13
EggNOG OGs2E9NA@1|root,2SFZF@2759|Eukaryota
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-07_006720.1
DescriptionK homology RNA-binding domain
Cds size423
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.4654896-CDS-P-wetherbeei_contig5702:2382..28051683186846.4654896-CDS-P-wetherbeei_contig5702:2382..2805Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5702 2383..2805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.4744039-UTR-P-wetherbeei_contig5702:2805..28111683186846.4744039-UTR-P-wetherbeei_contig5702:2805..2811Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5702 2806..2811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5702.1.1prot_P-wetherbeei_contig5702.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5702 2383..2805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5702.1.1

>prot_P-wetherbeei_contig5702.1.1 ID=prot_P-wetherbeei_contig5702.1.1|Name=mRNA_P-wetherbeei_contig5702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MEIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGSDMGRIH
AAARMVAELISKAPVNVNSAGVEDEVVSHMIDCPPHLIGLLIGRGGSTIK
RIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIQDVFNF
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mRNA from alignment at P-wetherbeei_contig5702:2383..2811-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5702.1.1 ID=mRNA_P-wetherbeei_contig5702.1.1|Name=mRNA_P-wetherbeei_contig5702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig5702:2383..2811- (Phaeothamnion wetherbeei SAG_119_79)
TGCGTGATGGAGATCGCGCCCGAGGTGGTGGGCTGGGTGATCGGCCGCAG CGGGGCGCACATCAAGGAGATGAAGCACCGCAGCGGCTGCGGCATGTGGG TCGACCAAAAGGACCTCAAGCTCTACATCACAGGCAGCGACATGGGCCGC ATTCACGCCGCCGCACGCATGGTGGCGGAGCTCATCAGCAAGGCGCCCGT CAACGTAAACAGCGCGGGGGTTGAGGACGAAGTTGTCTCCCACATGATTG ACTGCCCTCCGCACCTCATCGGGCTGCTGATTGGCCGCGGCGGCAGCACC ATCAAGCGCATCAAAGAGGAGTCGCGCGCCAACGTGGTCATCAACCAGAA GATGATGAAGGTGATTGTCAGTGGCATCCCGCAATCAGTGAGGCTGGCCG TGGCCATGATCCAGGACGTCTTCAACTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5702:2383..2811-

>mRNA_P-wetherbeei_contig5702.1.1 ID=mRNA_P-wetherbeei_contig5702.1.1|Name=mRNA_P-wetherbeei_contig5702.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig5702:2383..2811- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGATCGCGCCCGAGGTGGTGGGCTGGGTGATCGGCCGCAGCGGGGC
GCACATCAAGGAGATGAAGCACCGCAGCGGCTGCGGCATGTGGGTCGACC
AAAAGGACCTCAAGCTCTACATCACAGGCAGCGACATGGGCCGCATTCAC
GCCGCCGCACGCATGGTGGCGGAGCTCATCAGCAAGGCGCCCGTCAACGT
AAACAGCGCGGGGGTTGAGGACGAAGTTGTCTCCCACATGATTGACTGCC
CTCCGCACCTCATCGGGCTGCTGATTGGCCGCGGCGGCAGCACCATCAAG
CGCATCAAAGAGGAGTCGCGCGCCAACGTGGTCATCAACCAGAAGATGAT
GAAGGTGATTGTCAGTGGCATCCCGCAATCAGTGAGGCTGGCCGTGGCCA
TGATCCAGGACGTCTTCAACTTC
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