mRNA_P-wetherbeei_contig56884.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56884.1.1
Unique NamemRNA_P-wetherbeei_contig56884.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A7K0XRT7_9ACTN (DEAD/DEAH box helicase n=3 Tax=root TaxID=1 RepID=A0A7K0XRT7_9ACTN)

HSP 1 Score: 256 bits (655), Expect = 4.750e-76
Identity = 131/170 (77.06%), Postives = 145/170 (85.29%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEGEAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLR+LLGAEELRELLDPGVLADLELELQCL DGRRARS DELHDVLRKVGDLSAAE D+RCEG+  PWL  L+ ERRAI V +G E RF+AAEDAARYRDALGCA+P+GLP  FT+PV  PLE L+GR+ARTH PF AD  +RR  +PVERV GAL
Sbjct:  867 LAERRAAALALDRDLLRELLGAEELRELLDPGVLADLELELQCLVDGRRARSADELHDVLRKVGDLSAAEVDVRCEGDGAPWLATLLRERRAIAVRIGGEERFVAAEDAARYRDALGCALPMGLPVAFTDPVVHPLEDLVGRYARTHGPFLADGVSRRLAVPVERVVGAL 1036          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A539E3I7_9ACTN (Putative ATP-dependent helicase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E3I7_9ACTN)

HSP 1 Score: 249 bits (637), Expect = 1.280e-75
Identity = 129/172 (75.00%), Postives = 142/172 (82.56%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEGEA--QPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLRDLLGAEELRELLDPGVLAD+ELELQCL++GRRARS DELHDV RK GDL+AAEADLRCEG      WL +L  ERR I V +  E RFIAAEDA RYRDALGCA+PLGLPR FTEPVP PLE L+GR+ARTH+PF  DD ARRF  P  R++GAL
Sbjct:  135 LAERRAAALALDRDLLRDLLGAEELRELLDPGVLADVELELQCLSEGRRARSADELHDVFRKTGDLTAAEADLRCEGSGLCAAWLAELARERRIIEVGLADEQRFIAAEDAGRYRDALGCALPLGLPRAFTEPVPLPLEALVGRYARTHAPFLNDDVARRFGAPATRITGAL 306          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A7K1B6R8_9ACTN (DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B6R8_9ACTN)

HSP 1 Score: 253 bits (646), Expect = 7.770e-75
Identity = 128/171 (74.85%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEG-EAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLRDLLGAEELRELLDPGVLADLELELQCLT+GRRAR  DELHDVLRKVGDL+AAE DLRCEG + + W+D+L+  RRA+ + +G +VR IAAEDAARYRDALGC++PLGLPR FTEPV  PLE L+ R+ARTH+PF ADD ARRF +P  R  GAL
Sbjct:  866 LAERRAAALALDRDLLRDLLGAEELRELLDPGVLADLELELQCLTEGRRARDPDELHDVLRKVGDLTAAEIDLRCEGSDGRAWVDELIRARRAVEIGIGDDVRVIAAEDAARYRDALGCSLPLGLPRAFTEPVALPLESLVARYARTHAPFVADDVARRFAVPANRAVGAL 1036          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A3C1L590_9ACTN (DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L590_9ACTN)

HSP 1 Score: 244 bits (622), Expect = 8.590e-74
Identity = 129/171 (75.44%), Postives = 140/171 (81.87%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEG-EAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAALSLDRDLLRDLLGAEELRELLDPG LADLELELQ L DGRRARS DELHDVLRKVGDLSAAE DLRCEG E+  WL  L+H+RRAI VSV    R +AAEDAARYRDALGC VPLGLPR FTEPVP PLE L+GR+ART+ PF  +  A RF + ++R  GAL
Sbjct:  398 LAERRAAALSLDRDLLRDLLGAEELRELLDPGALADLELELQLLADGRRARSADELHDVLRKVGDLSAAEVDLRCEGHESATWLASLLHDRRAILVSVAGVERHVAAEDAARYRDALGCNVPLGLPRAFTEPVPHPLESLVGRYARTNGPFVVEGLAARFGISIDRAMGAL 568          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A6C7E3N9_ILUCY (Putative ATP-dependent helicase n=2 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A6C7E3N9_ILUCY)

HSP 1 Score: 242 bits (617), Expect = 6.300e-71
Identity = 128/173 (73.99%), Postives = 144/173 (83.24%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRC---EGEAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLRDLLGAEELR+LLDP VLAD+ELELQCLT  RRARS DELHDVLRKVGDL+ AE DLRC   E +A   L QL+ E+RAI + VG EVR+IAAEDAARYRDALGCA+P+GLP  FT+PV RPLE L+GR+ARTH PF A D ARRFD P ER++GAL
Sbjct:  884 LAERRAAALALDRDLLRDLLGAEELRDLLDPDVLADVELELQCLTGYRRARSADELHDVLRKVGDLTTAEIDLRCVDDEVDAAAALRQLLDEKRAIEIGVGGEVRYIAAEDAARYRDALGCAIPVGLPMAFTDPVARPLEELVGRYARTHGPFLAADVARRFDAPTERIAGAL 1056          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A6I3EYA3_9ACTN (DEAD/DEAH box helicase n=3 Tax=root TaxID=1 RepID=A0A6I3EYA3_9ACTN)

HSP 1 Score: 241 bits (615), Expect = 1.160e-70
Identity = 124/170 (72.94%), Postives = 140/170 (82.35%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEGEAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAALSLDRDLLRDLLGAEELRELLDPG LADLELELQ L DGRRARS DELHDVLR++GDL+A E DLR E ++ PW+ +LV  RRA++VSV  E R IAA+DAARYRDALGC VPLGLPREFTEPVP PLE L+ R+ARTH PF  +  A+R  + VER +GAL
Sbjct:  839 LAERRAAALSLDRDLLRDLLGAEELRELLDPGALADLELELQLLADGRRARSADELHDVLRRLGDLTAQELDLRAEADSGPWVAELVQHRRAVSVSVAGEQRLIAADDAARYRDALGCNVPLGLPREFTEPVPHPLEALVVRYARTHGPFVVESLAQRLGISVERATGAL 1008          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A7Y1ZTT3_9ACTN (DEAD/DEAH box helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZTT3_9ACTN)

HSP 1 Score: 241 bits (614), Expect = 1.600e-70
Identity = 129/195 (66.15%), Postives = 144/195 (73.85%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEGE-------------------------AQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLRDLLGAEELRELLDP VLAD+EL+LQCLTDGRRARS DELHDVLRKVGDL+AAE DLRC+                            + WL QL+ E+RAI VSV  EVR++A EDAARYRDALGCA+PLGLP  FTEPV RPLE L+GR+ARTH PF   D ARRF  P ER++GAL
Sbjct:  864 LAERRAAALALDRDLLRDLLGAEELRELLDPDVLADVELQLQCLTDGRRARSVDELHDVLRKVGDLTAAEIDLRCQSARDDADELADAGGAAADADEAGADAAGREWLAQLLREKRAIEVSVAGEVRYVAGEDAARYRDALGCAIPLGLPMAFTEPVARPLEELVGRYARTHGPFVTADVARRFGAPAERIAGAL 1058          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A2E0RN34_9ACTN (DEAD/DEAH box helicase n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E0RN34_9ACTN)

HSP 1 Score: 240 bits (612), Expect = 2.960e-70
Identity = 120/171 (70.18%), Postives = 142/171 (83.04%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEG-EAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLR+LLG+EELRELLDPGVLAD+ELELQ L DGRRARS DELHDV R+VGDL+ +E D RCEG + + W+D+LV ERR I + +G +VR+ AAEDAARYRDA GC++P+GLP  FT+PVP PLE L+GRFARTH PF A D ARRF  PVER+ GA+
Sbjct:  851 LAERRAAALALDRDLLRELLGSEELRELLDPGVLADVELELQHLADGRRARSADELHDVFRRVGDLTISEVDARCEGSDGRGWVDELVRERRVIEIGIGDDVRYAAAEDAARYRDAFGCSIPVGLPIAFTDPVPHPLESLVGRFARTHGPFLAVDVARRFAAPVERIEGAI 1021          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: UPI000344ABD1 (DEAD/DEAH box helicase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI000344ABD1)

HSP 1 Score: 235 bits (600), Expect = 1.230e-68
Identity = 126/189 (66.67%), Postives = 142/189 (75.13%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCE-------------------GEAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLRDLLGAEELR+LLDP VLAD+ELELQC+ + RRARS DELHDVLRKVGDL+AAE DLRC                    G  Q W+ QLV E+RAI + VG E+RF AAEDAARYRDALGCA+P+GLP  FTEPV RPLE L+GR+ARTH PF A D A R D P+ERV GA+
Sbjct:  879 LAERRAAALALDRDLLRDLLGAEELRDLLDPEVLADVELELQCVAEHRRARSPDELHDVLRKVGDLTAAEVDLRCTDDRDGVRSSVDAPELPTSGGFGQVWMQQLVEEKRAIEIGVGGEMRFAAAEDAARYRDALGCAIPVGLPFAFTEPVARPLEDLVGRYARTHGPFVAADVAGRLDAPLERVGGAI 1067          
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Match: A0A6I3WWQ7_9ACTN (DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=A0A6I3WWQ7_9ACTN)

HSP 1 Score: 234 bits (597), Expect = 3.090e-68
Identity = 122/170 (71.76%), Postives = 139/170 (81.76%), Query Frame = 1
Query:    1 LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRARSHDELHDVLRKVGDLSAAEADLRCEGEAQPWLDQLVHERRAITVSVGSEVRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPFTADDAARRFDLPVERVSGAL 510
            LA RRAAAL+LDRDLLRDLLGAEELRELLD GVLADLELELQCL DGRRARS DELHD LR+VG+L+A+E +LRCEG A  W   LV ERRAI V V     +IAA+DAARYRDALGC++P+GLP  FT+PV RPLE L+ R+ARTH PF + DAARRF L +ER +GAL
Sbjct:  869 LAERRAAALALDRDLLRDLLGAEELRELLDAGVLADLELELQCLADGRRARSADELHDALRRVGELTASEIELRCEGPAAEWAAALVAERRAIVVRVADTDCYIAADDAARYRDALGCSLPMGLPMAFTDPVARPLEELLRRYARTHGPFVSSDAARRFGLSLERAAGAL 1038          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K0XRT7_9ACTN4.750e-7677.06DEAD/DEAH box helicase n=3 Tax=root TaxID=1 RepID=... [more]
A0A539E3I7_9ACTN1.280e-7575.00Putative ATP-dependent helicase (Fragment) n=1 Tax... [more]
A0A7K1B6R8_9ACTN7.770e-7574.85DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=... [more]
A0A3C1L590_9ACTN8.590e-7475.44DEAD/DEAH box helicase (Fragment) n=1 Tax=Acidimic... [more]
A0A6C7E3N9_ILUCY6.300e-7173.99Putative ATP-dependent helicase n=2 Tax=Ilumatobac... [more]
A0A6I3EYA3_9ACTN1.160e-7072.94DEAD/DEAH box helicase n=3 Tax=root TaxID=1 RepID=... [more]
A0A7Y1ZTT3_9ACTN1.600e-7066.15DEAD/DEAH box helicase n=1 Tax=Ilumatobacter sp. T... [more]
A0A2E0RN34_9ACTN2.960e-7070.18DEAD/DEAH box helicase n=2 Tax=Acidimicrobiales Ta... [more]
UPI000344ABD11.230e-6866.67DEAD/DEAH box helicase n=1 Tax=Ilumatobacter nonam... [more]
A0A6I3WWQ7_9ACTN3.090e-6871.76DEAD/DEAH box helicase n=2 Tax=root TaxID=1 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56884contigP-wetherbeei_contig56884:4..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_09490
PFAMsDEAD,Helicase_C
Model size510
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03724,ko:K06877
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-71
EggNOG OGsCOG1201@1|root,COG1201@2|Bacteria,2I6VR@201174|Actinobacteria,4CNBF@84992|Acidimicrobiia
DescriptionDEAD-like helicases superfamily
Cds size510
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.4699361-CDS-P-wetherbeei_contig56884:3..5131683186844.4699361-CDS-P-wetherbeei_contig56884:3..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56884 4..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56884.1.1prot_P-wetherbeei_contig56884.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56884 4..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56884.1.1

>prot_P-wetherbeei_contig56884.1.1 ID=prot_P-wetherbeei_contig56884.1.1|Name=mRNA_P-wetherbeei_contig56884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
LAARRAAALSLDRDLLRDLLGAEELRELLDPGVLADLELELQCLTDGRRA
RSHDELHDVLRKVGDLSAAEADLRCEGEAQPWLDQLVHERRAITVSVGSE
VRFIAAEDAARYRDALGCAVPLGLPREFTEPVPRPLELLIGRFARTHSPF
TADDAARRFDLPVERVSGAL
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mRNA from alignment at P-wetherbeei_contig56884:4..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56884.1.1 ID=mRNA_P-wetherbeei_contig56884.1.1|Name=mRNA_P-wetherbeei_contig56884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig56884:4..513- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCCGCACGGCGCGCCGCCGCGCTCTCGTTGGATCGCGATCTGCTGCG CGACCTGCTCGGTGCCGAGGAGCTGCGCGAGCTGCTCGACCCCGGCGTGT TGGCCGACCTCGAGCTCGAGCTGCAGTGCCTCACCGACGGCCGTCGGGCC CGGTCGCACGACGAGCTGCACGACGTGCTGCGCAAGGTCGGCGACCTGTC GGCGGCAGAAGCGGACCTGCGTTGCGAGGGCGAGGCGCAACCGTGGCTCG ACCAGTTGGTGCACGAGCGCCGGGCGATCACGGTCTCCGTCGGCAGCGAG GTGCGCTTCATCGCTGCCGAGGACGCGGCTCGCTACCGCGACGCGCTCGG CTGCGCGGTGCCGCTGGGACTGCCTCGCGAATTCACCGAGCCGGTGCCGC GGCCGCTGGAGCTGCTGATCGGACGGTTCGCTCGCACGCACAGCCCGTTC ACCGCTGACGACGCGGCTCGCCGGTTCGACCTGCCGGTCGAGCGGGTGTC CGGTGCGTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56884:4..513-

>mRNA_P-wetherbeei_contig56884.1.1 ID=mRNA_P-wetherbeei_contig56884.1.1|Name=mRNA_P-wetherbeei_contig56884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig56884:4..513- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCCGCACGGCGCGCCGCCGCGCTCTCGTTGGATCGCGATCTGCTGCG
CGACCTGCTCGGTGCCGAGGAGCTGCGCGAGCTGCTCGACCCCGGCGTGT
TGGCCGACCTCGAGCTCGAGCTGCAGTGCCTCACCGACGGCCGTCGGGCC
CGGTCGCACGACGAGCTGCACGACGTGCTGCGCAAGGTCGGCGACCTGTC
GGCGGCAGAAGCGGACCTGCGTTGCGAGGGCGAGGCGCAACCGTGGCTCG
ACCAGTTGGTGCACGAGCGCCGGGCGATCACGGTCTCCGTCGGCAGCGAG
GTGCGCTTCATCGCTGCCGAGGACGCGGCTCGCTACCGCGACGCGCTCGG
CTGCGCGGTGCCGCTGGGACTGCCTCGCGAATTCACCGAGCCGGTGCCGC
GGCCGCTGGAGCTGCTGATCGGACGGTTCGCTCGCACGCACAGCCCGTTC
ACCGCTGACGACGCGGCTCGCCGGTTCGACCTGCCGGTCGAGCGGGTGTC
CGGTGCGTTG
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