mRNA_P-wetherbeei_contig5657.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5657.1.1
Unique NamemRNA_P-wetherbeei_contig5657.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: D7G591_ECTSI (Calcium uniporter protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G591_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 8.120e-25
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   13 RTELAAMEKEDAQLTALEAVAARRVRSNTGAKKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQLRSARGRLGYDAGSHAALREAMQRHRLAVDRL 405
            R +L A+  EDA+L  +  +   + +     KK AVL+F+ AQFG LAY VYE+YSWD+MEPA+YFLMLSY V  SLYF+TK R  S++NL   AL+R     +   GY   SH  ++  ++R+  AV+ L
Sbjct:  279 RQQLNALYSEDARLQGIRDILIAKAQRQVTLKKGAVLAFMTAQFGTLAYCVYEVYSWDVMEPATYFLMLSYSVGSSLYFSTKNREASFENLEGVALKRSEAKLKSAHGYSRTSHDEVKGEIKRYEEAVELL 409          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A835ZDG9_9STRA (MCU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.660e-21
Identity = 55/110 (50.00%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   82 RVRSNTGAKKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQLRSARGRLGYDAGSHAALREAMQRHRLAVDRLAA 411
            R R     K   VL FL  QF GL YLVYE+YSWDIMEPASYFLMLSY V  +LYF+ K+R  ++DNLL+ A+ +  R      GY   +H A    + R R A D L A
Sbjct:  467 RARRGARIKSAGVLGFLTLQFSGLFYLVYEVYSWDIMEPASYFLMLSYSVGSALYFSFKKREATFDNLLQLAIAKHQRQLEPEHGYSVAAHDAAALHVARIRRARDVLCA 576          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A1V9ZV62_9STRA (Calcium uniporter protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV62_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.580e-9
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  106 KKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQL 312
            +K A L F+   +GGLAY V+++YSWDIMEP +YF+  SY VA S Y    +   +Y N+   + +++L
Sbjct:  260 QKFAALGFITTFYGGLAYTVWDVYSWDIMEPITYFIGFSYVVASSFYHTKTKAESTYPNMWNRSYQKKL 328          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A2R5GJK2_9STRA (Calcium uniporter protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJK2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.630e-8
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  115 AVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQLRSARGRLGYDAGSHAALREAMQR 381
            A   FL AQ   LAY V+ +YSWD+MEP +YF+  S  + G+ YFA  RR  SYD L    L R+  S   + G+D     ALR   +R
Sbjct:  270 AAFVFLSAQNLVLAYGVWGVYSWDVMEPITYFIGSSVTLWGAFYFAWLRRENSYDTLFNNMLARRRASLHRQDGFDESQVIALRRLYRR 358          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A024TH76_9STRA (Calcium uniporter protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TH76_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.690e-8
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  103 AKKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNL 285
            AKK A L+F+ + + G+ YLV+++YSWD+MEP SYF+  S  + GS Y    RR+  Y N+
Sbjct:  271 AKKWAGLAFIASFYTGMGYLVWDVYSWDVMEPISYFVGFSAVLGGSFYHTLTRRDAQYTNM 331          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A067BEQ5_SAPPC (Calcium uniporter protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BEQ5_SAPPC)

HSP 1 Score: 60.1 bits (144), Expect = 3.140e-8
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  121 LSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQL 312
            L F+   +GGLAY V+++YSWD+MEP +YF+  S  +A S Y     R  +Y N+   A E++L
Sbjct:  108 LGFITTFYGGLAYTVWDVYSWDVMEPITYFIGFSAVLASSFYHTMTSRESTYPNMWNRAYEKKL 171          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A067BWC6_SAPPC (Calcium uniporter protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BWC6_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 4.940e-8
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  121 LSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQL 312
            L F+   +GGLAY V+++YSWD+MEP +YF+  S  +A S Y     R  +Y N+   A E++L
Sbjct:  270 LGFITTFYGGLAYTVWDVYSWDVMEPITYFIGFSAVLASSFYHTMTNRESTYPNMWNRAYEKKL 333          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A5D6XJV7_9STRA (Calcium uniporter protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJV7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.610e-8
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    4 HGDRTELAAMEKEDAQLTALEAVAA---RRVRSNTGAKKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQL 312
            HG + + A +E+  ++L   +AV A   R  +    A+K   L+ L   +G L YLV+++YSWD+MEP +YF+  +  +  S Y    +++P+Y N+ +   +++L
Sbjct:  223 HGRKAQEARLEELTSELKKAQAVDADTQRAAQKVPNAQKWITLTGLSTFYGSLMYLVWDVYSWDVMEPITYFIGFTAVLGNSFYHTITKKDPTYTNIWQKKYQKRL 328          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A485L821_9STRA (Calcium uniporter protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L821_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.750e-7
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   70 VAARRVRSNTGAKKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQL 312
            +AARRV +    KK    +F+ + + G+ YLV+++YSWD+MEP SYF+  S  + GS Y    R + +Y N+ +   +R L
Sbjct:  268 LAARRVPN---LKKWGAAAFIASFYTGMGYLVWDVYSWDVMEPISYFVGFSAVLGGSFYHTMTRSDATYPNMWQRDYDRHL 345          
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Match: A0A1V9YJK2_9STRA (Calcium uniporter protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJK2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.340e-7
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  106 KKLAVLSFLMAQFGGLAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAALERQL 312
            +K A L F+   +GGLAY V+++YSWD+MEP +YF+  S  +  S Y     R  +Y N+   A  ++L
Sbjct:  265 QKFAGLGFITTFYGGLAYTVWDVYSWDVMEPITYFIGFSAVLMSSFYHTMTTRESTYPNMWNRAYAKKL 333          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5657.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G591_ECTSI8.120e-2545.80Calcium uniporter protein n=1 Tax=Ectocarpus silic... [more]
A0A835ZDG9_9STRA4.660e-2150.00MCU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1V9ZV62_9STRA1.580e-942.03Calcium uniporter protein n=1 Tax=Thraustotheca cl... [more]
A0A2R5GJK2_9STRA2.630e-842.70Calcium uniporter protein n=1 Tax=Hondaea fermenta... [more]
A0A024TH76_9STRA2.690e-845.90Calcium uniporter protein n=2 Tax=Aphanomyces inva... [more]
A0A067BEQ5_SAPPC3.140e-842.19Calcium uniporter protein n=1 Tax=Saprolegnia para... [more]
A0A067BWC6_SAPPC4.940e-842.19Calcium uniporter protein n=2 Tax=Saprolegnia TaxI... [more]
A0A5D6XJV7_9STRA6.610e-831.13Calcium uniporter protein n=1 Tax=Pythium brassicu... [more]
A0A485L821_9STRA1.750e-738.27Calcium uniporter protein n=1 Tax=Aphanomyces stel... [more]
A0A1V9YJK2_9STRA4.340e-739.13Calcium uniporter protein n=1 Tax=Achlya hypogyna ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5657contigP-wetherbeei_contig5657:278..1079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G591
Preferred nameCCDC109B
PFAMsMCU
Model size411
Max annot lvl2759|Eukaryota
KEGG koko:K14831,ko:K20858
KEGG TC1.A.77.1
KEGG Pathwayko04020,ko04218,ko04621,map04020,map04218,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0008016,GO:0008150,GO:0008200,GO:0008324,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015085,GO:0015267,GO:0015291,GO:0015292,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0019222,GO:0019722,GO:0019725,GO:0019855,GO:0019866,GO:0019932,GO:0022607,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030029,GO:0030036,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033500,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0036444,GO:0042592,GO:0042593,GO:0042802,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044057,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046883,GO:0046887,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048729,GO:0048856,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051560,GO:0051561,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060026,GO:0060027,GO:0060401,GO:0060429,GO:0061041,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072375,GO:0072503,GO:0072507,GO:0072511,GO:0080134,GO:0090087,GO:0090276,GO:0090277,GO:0097435,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:0099106,GO:1902495,GO:1903034,GO:1903426,GO:1903522,GO:1903530,GO:1903532,GO:1904951,GO:1990246,GO:1990351,GO:1990542,GO:2000377
Exons2
Evalue1.33e-25
EggNOG OGsKOG2966@1|root,KOG2966@2759|Eukaryota
Ec32 ortholog descriptionCoiled-coil domain containing protein 109, C-terminal
Ec32 orthologEc-14_006660.1
Descriptionuniporter activity
Cds size411
COG categoryS
BRITEko00000,ko00001,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.6279054-CDS-P-wetherbeei_contig5657:277..4481683186840.6279054-CDS-P-wetherbeei_contig5657:277..448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5657 278..448 +
1683186840.6407301-CDS-P-wetherbeei_contig5657:839..10791683186840.6407301-CDS-P-wetherbeei_contig5657:839..1079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5657 840..1079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5657.1.1prot_P-wetherbeei_contig5657.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5657 278..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5657.1.1

>prot_P-wetherbeei_contig5657.1.1 ID=prot_P-wetherbeei_contig5657.1.1|Name=mRNA_P-wetherbeei_contig5657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MHGDRTELAAMEKEDAQLTALEAVAARRVRSNTGAKKLAVLSFLMAQFGG
LAYLVYEIYSWDIMEPASYFLMLSYGVAGSLYFATKRRNPSYDNLLRAAL
ERQLRSARGRLGYDAGSHAALREAMQRHRLAVDRLAA
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mRNA from alignment at P-wetherbeei_contig5657:278..1079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5657.1.1 ID=mRNA_P-wetherbeei_contig5657.1.1|Name=mRNA_P-wetherbeei_contig5657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=802bp|location=Sequence derived from alignment at P-wetherbeei_contig5657:278..1079+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGGGACAGGACGGAGCTTGCAGCGATGGAGAAGGAGGACGCGCA GCTGACGGCACTGGAGGCGGTCGCCGCCCGCCGCGTGCGCTCTAACACAG GCGCCAAGAAGCTGGCGGTGCTGAGCTTCCTCATGGCGCAGTTCGGCGGC CTCGCCTATCTCGTCTACGAGGTCAGTGCGCCGGCTCGGCTAGGGCCGAA GCAGCGGACGGACTTTGGTTCCGAAGGCGAACGAAGAGAAGGGAAAGTGG GAGAGGAGCAGGCGTCGTTTCTTCTTGAGGGACCATGTCGGGCTGACTGG AATCCGCGTGAGGTTACTGGCTGTTGCCAAGCCGATGCATGGGAGTAGCA GATGACCCTTGATGGCTGGTCAACGACTGCGGAACGCCGGCGAGAGCAGC AGCAGTGGTGACGAAGGAGGAGGCCGTGCCTTTCCGCCAGGATCTGCCGG TCCTTCACTAATCTATCGTACAAACGCATTAGTTGGCTCGTCACTTCCCA TCTGTTACACTATTCCCTCGTCCGCTTTTTGCTTCTGTCATCGAACTTTT GCCTGCACGCAGATCTACAGCTGGGACATCATGGAGCCGGCGTCGTACTT TCTCATGCTCTCGTACGGCGTCGCCGGCAGCCTCTACTTCGCCACCAAGC GCCGCAACCCGTCCTACGACAATCTGCTGCGGGCCGCGCTCGAGCGCCAG CTGCGGTCGGCGCGGGGTCGCCTCGGCTATGACGCCGGGAGCCACGCCGC GCTGCGGGAGGCGATGCAGCGGCACCGCCTGGCCGTTGACCGGCTGGCGG CA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5657:278..1079+

>mRNA_P-wetherbeei_contig5657.1.1 ID=mRNA_P-wetherbeei_contig5657.1.1|Name=mRNA_P-wetherbeei_contig5657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig5657:278..1079+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGGGACAGGACGGAGCTTGCAGCGATGGAGAAGGAGGACGCGCA
GCTGACGGCACTGGAGGCGGTCGCCGCCCGCCGCGTGCGCTCTAACACAG
GCGCCAAGAAGCTGGCGGTGCTGAGCTTCCTCATGGCGCAGTTCGGCGGC
CTCGCCTATCTCGTCTACGAGATCTACAGCTGGGACATCATGGAGCCGGC
GTCGTACTTTCTCATGCTCTCGTACGGCGTCGCCGGCAGCCTCTACTTCG
CCACCAAGCGCCGCAACCCGTCCTACGACAATCTGCTGCGGGCCGCGCTC
GAGCGCCAGCTGCGGTCGGCGCGGGGTCGCCTCGGCTATGACGCCGGGAG
CCACGCCGCGCTGCGGGAGGCGATGCAGCGGCACCGCCTGGCCGTTGACC
GGCTGGCGGCA
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