mRNA_P-wetherbeei_contig565.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A6H5LD66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD66_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.630e-52 Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
L+TPTL+NANM LL +S +W+ LVGKAK ++L P + GGTF ITNLGM+GVS+FAAILP G+ILAIGGSLP V +PDGSF VKEMTVTITCDHRHIYGADAA FL LADL+ENN QLL
Sbjct: 236 LITPTLKNANMMSLLGLSNKWRDLVGKAKAKQLKPDEYTGGTFTITNLGMFGVSDFAAILPSKMGAILAIGGSLPTVVQKPDGSFTTVKEMTVTITCDHRHIYGADAALFLGGLADLMENNPLQLL 361
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A836C7H2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H2_9STRA) HSP 1 Score: 178 bits (452), Expect = 1.260e-50 Identity = 88/127 (69.29%), Postives = 100/127 (78.74%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
L+TPTL+ AN +L +S WK LVGKAK + L P + GTF I+NLGM+GVS+F A+LP GSILAIGG+LP V R DG+FG VKEMTVTITCDHRHIYGADAAEFLR ADLLENNCAQLLL
Sbjct: 478 LMTPTLKRANEMSILALSAAWKDLVGKAKAKSLKPDEYNSGTFYISNLGMFGVSDFGALLPSGAGSILAIGGALPTVVQRADGTFGTVKEMTVTITCDHRHIYGADAAEFLRTFADLLENNCAQLLL 604
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: K8YSL5_NANGC (Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSL5_NANGC) HSP 1 Score: 169 bits (429), Expect = 5.000e-49 Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
L+TPTLRNAN L+++ +W+ LV KA++++LAP + GTF I+NLGMYGVS F AILPP GSILAIGGS+P V R DGSF V K+MTVTITCDHRHIYGADAAEFLRDLA+L+E + LL
Sbjct: 255 LITPTLRNANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGSIPTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEEDVESLL 380
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S2DNK3_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNK3_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.090e-46 Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
L+TPT+R N + ++ ++WK LV KAK+++LAP + GTF I+NLGM+GVS F AILPP TGSILAI GS P V A+ +G GVVK+MTVTITCDHRHIYGADAA FL+DLADLLENN LL
Sbjct: 438 LITPTIRKCNTMDIYSVGREWKDLVTKAKEKRLAPIEYNSGTFTISNLGMFGVSSFEAILPPGTGSILAIAGSAPTVVAQANGHLGVVKKMTVTITCDHRHIYGADAAMFLKDLADLLENNTEDLL 563
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: W7TSZ8_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSZ8_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.320e-45 Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENN 363
L+TPTLRNAN L+++ +W+ LV KA++++LAP + GTF I+NLGMYGVS F AILPP GSILAIGGS+P V R DGSF V K+MTVTITCDHRHIYGADAAEFLRDLA+L+E +
Sbjct: 620 LITPTLRNANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGSIPTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEED 740
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S0ECH2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ECH2_9EUKA) HSP 1 Score: 150 bits (380), Expect = 4.070e-43 Identity = 70/126 (55.56%), Postives = 99/126 (78.57%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
L+TPT+R A+ + L ++S++WK +VG+ + KL P++ GGTF I+NLGM+GVS+F +ILPP TG+ILA+ S P + +G G+VK+MTVT+TCDHRHIYGADAA+FL+DLA+L+EN+ LL
Sbjct: 124 LVTPTMRAADTNDLYSLSREWKDMVGRTMEGKLKPSE-MGGTFTISNLGMFGVSDFVSILPPGTGAILAVAASTPTFVQQKNGMMGMVKQMTVTLTCDHRHIYGADAAKFLKDLAELIENDMESLL 248
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S0Q6Z1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q6Z1_9EUKA) HSP 1 Score: 150 bits (378), Expect = 4.690e-43 Identity = 71/127 (55.91%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
L+TP L+NA+ L ++ + WK LV +A ++KLAP + GTF ++NLGM+GVS+F +ILPPNTG+ILAI S P + +G G+ K+MTVTITCDHRHIYGADAA FL+DLA L+E++ LLL
Sbjct: 103 LITPVLKNADQVDLYSLGRSWKDLVKRAMEKKLAPDEFTTGTFTVSNLGMFGVSQFVSILPPNTGAILAIAASTPTAVLQKNGMMGMAKQMTVTITCDHRHIYGADAAAFLKDLAQLIESDTNSLLL 229
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S2C0G0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0G0_9STRA) HSP 1 Score: 149 bits (377), Expect = 7.630e-43 Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
L+TPT+R N + T+ ++W+ LV KAK L P + GTF ITNLGM+GVS F AILP GSILAIGG+ PVV A+ +G FGV K+MTVTITCDHRHIYGADAA FL+DL LLE L+
Sbjct: 108 LITPTIRKCNEMDIYTVGREWRDLVNKAKSGSLKPEEYNTGTFAITNLGMFGVSSFEAILPSGMGSILAIGGTKPVVVAQKNGHFGVEKQMTVTITCDHRHIYGADAALFLKDLGQLLEEETDSLV 233
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: B1XLG5_SYNP2 (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=9 Tax=unclassified Synechococcus TaxID=2626047 RepID=B1XLG5_SYNP2) HSP 1 Score: 154 bits (388), Expect = 1.860e-42 Identity = 76/127 (59.84%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
L+TP L+NA+ + ++S++WK LV +A+ ++L P + + GTF ++NLGM+GVS F AILPP GSILAIGG+ P V A PDG FGV K+MTV ITCDHR IYGADAA FL+DLADL+ENN L L
Sbjct: 310 LITPVLQNADQMDIYSLSRKWKDLVDRARLKQLQPDEYSTGTFTLSNLGMFGVSSFDAILPPGQGSILAIGGAQPKVVATPDGLFGVKKQMTVNITCDHRIIYGADAAAFLKDLADLIENNTHSLTL 436
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S0QEX0_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEX0_9CRYP) HSP 1 Score: 148 bits (374), Expect = 2.630e-42 Identity = 72/127 (56.69%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
L+TP +R+AN+ + +++ QWK LVGKAK KL P + + GTF ++NLGM+GVS F AILPP TG+ILA+GG+ PVV R +G+ V++M VT+T DHRHIYGAD+A+FL+DLADLLEN ++L
Sbjct: 115 LITPVIRDANVLDVTSLNAQWKELVGKAKAGKLRPEEFSSGTFTVSNLGMFGVSHFGAILPPGTGAILAVGGATPVVQVR-NGAAVEVRQMEVTLTADHRHIYGADSAQFLKDLADLLENRVLDIVL 240 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig565.1.1 >prot_P-wetherbeei_contig565.1.1 ID=prot_P-wetherbeei_contig565.1.1|Name=mRNA_P-wetherbeei_contig565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp MHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILback to top mRNA from alignment at P-wetherbeei_contig565:1..384+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig565.1.1 ID=mRNA_P-wetherbeei_contig565.1.1|Name=mRNA_P-wetherbeei_contig565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig565:1..384+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig565:1..384+ >mRNA_P-wetherbeei_contig565.1.1 ID=mRNA_P-wetherbeei_contig565.1.1|Name=mRNA_P-wetherbeei_contig565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig565:1..384+ (Phaeothamnion wetherbeei SAG_119_79)back to top |