mRNA_P-wetherbeei_contig565.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig565.1.1
Unique NamemRNA_P-wetherbeei_contig565.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A6H5LD66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD66_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.630e-52
Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
            L+TPTL+NANM  LL +S +W+ LVGKAK ++L P +  GGTF ITNLGM+GVS+FAAILP   G+ILAIGGSLP V  +PDGSF  VKEMTVTITCDHRHIYGADAA FL  LADL+ENN  QLL
Sbjct:  236 LITPTLKNANMMSLLGLSNKWRDLVGKAKAKQLKPDEYTGGTFTITNLGMFGVSDFAAILPSKMGAILAIGGSLPTVVQKPDGSFTTVKEMTVTITCDHRHIYGADAALFLGGLADLMENNPLQLL 361          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A836C7H2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.260e-50
Identity = 88/127 (69.29%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
            L+TPTL+ AN   +L +S  WK LVGKAK + L P +   GTF I+NLGM+GVS+F A+LP   GSILAIGG+LP V  R DG+FG VKEMTVTITCDHRHIYGADAAEFLR  ADLLENNCAQLLL
Sbjct:  478 LMTPTLKRANEMSILALSAAWKDLVGKAKAKSLKPDEYNSGTFYISNLGMFGVSDFGALLPSGAGSILAIGGALPTVVQRADGTFGTVKEMTVTITCDHRHIYGADAAEFLRTFADLLENNCAQLLL 604          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: K8YSL5_NANGC (Pyruvate dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSL5_NANGC)

HSP 1 Score: 169 bits (429), Expect = 5.000e-49
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
            L+TPTLRNAN   L+++  +W+ LV KA++++LAP +   GTF I+NLGMYGVS F AILPP  GSILAIGGS+P V  R DGSF V K+MTVTITCDHRHIYGADAAEFLRDLA+L+E +   LL
Sbjct:  255 LITPTLRNANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGSIPTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEEDVESLL 380          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S2DNK3_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNK3_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.090e-46
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
            L+TPT+R  N   + ++ ++WK LV KAK+++LAP +   GTF I+NLGM+GVS F AILPP TGSILAI GS P V A+ +G  GVVK+MTVTITCDHRHIYGADAA FL+DLADLLENN   LL
Sbjct:  438 LITPTIRKCNTMDIYSVGREWKDLVTKAKEKRLAPIEYNSGTFTISNLGMFGVSSFEAILPPGTGSILAIAGSAPTVVAQANGHLGVVKKMTVTITCDHRHIYGADAAMFLKDLADLLENNTEDLL 563          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: W7TSZ8_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSZ8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.320e-45
Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENN 363
            L+TPTLRNAN   L+++  +W+ LV KA++++LAP +   GTF I+NLGMYGVS F AILPP  GSILAIGGS+P V  R DGSF V K+MTVTITCDHRHIYGADAAEFLRDLA+L+E +
Sbjct:  620 LITPTLRNANAMDLVSLGGKWRELVKKAQEKRLAPDEYTTGTFTISNLGMYGVSAFDAILPPGQGSILAIGGSIPTVVVRKDGSFAVQKQMTVTITCDHRHIYGADAAEFLRDLAELMEED 740          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S0ECH2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ECH2_9EUKA)

HSP 1 Score: 150 bits (380), Expect = 4.070e-43
Identity = 70/126 (55.56%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
            L+TPT+R A+ + L ++S++WK +VG+  + KL P++  GGTF I+NLGM+GVS+F +ILPP TG+ILA+  S P    + +G  G+VK+MTVT+TCDHRHIYGADAA+FL+DLA+L+EN+   LL
Sbjct:  124 LVTPTMRAADTNDLYSLSREWKDMVGRTMEGKLKPSE-MGGTFTISNLGMFGVSDFVSILPPGTGAILAVAASTPTFVQQKNGMMGMVKQMTVTLTCDHRHIYGADAAKFLKDLAELIENDMESLL 248          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S0Q6Z1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q6Z1_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 4.690e-43
Identity = 71/127 (55.91%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
            L+TP L+NA+   L ++ + WK LV +A ++KLAP +   GTF ++NLGM+GVS+F +ILPPNTG+ILAI  S P    + +G  G+ K+MTVTITCDHRHIYGADAA FL+DLA L+E++   LLL
Sbjct:  103 LITPVLKNADQVDLYSLGRSWKDLVKRAMEKKLAPDEFTTGTFTVSNLGMFGVSQFVSILPPNTGAILAIAASTPTAVLQKNGMMGMAKQMTVTITCDHRHIYGADAAAFLKDLAQLIESDTNSLLL 229          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S2C0G0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0G0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 7.630e-43
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLL 378
            L+TPT+R  N   + T+ ++W+ LV KAK   L P +   GTF ITNLGM+GVS F AILP   GSILAIGG+ PVV A+ +G FGV K+MTVTITCDHRHIYGADAA FL+DL  LLE     L+
Sbjct:  108 LITPTIRKCNEMDIYTVGREWRDLVNKAKSGSLKPEEYNTGTFAITNLGMFGVSSFEAILPSGMGSILAIGGTKPVVVAQKNGHFGVEKQMTVTITCDHRHIYGADAALFLKDLGQLLEEETDSLV 233          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: B1XLG5_SYNP2 (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=9 Tax=unclassified Synechococcus TaxID=2626047 RepID=B1XLG5_SYNP2)

HSP 1 Score: 154 bits (388), Expect = 1.860e-42
Identity = 76/127 (59.84%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
            L+TP L+NA+   + ++S++WK LV +A+ ++L P + + GTF ++NLGM+GVS F AILPP  GSILAIGG+ P V A PDG FGV K+MTV ITCDHR IYGADAA FL+DLADL+ENN   L L
Sbjct:  310 LITPVLQNADQMDIYSLSRKWKDLVDRARLKQLQPDEYSTGTFTLSNLGMFGVSSFDAILPPGQGSILAIGGAQPKVVATPDGLFGVKKQMTVNITCDHRIIYGADAAAFLKDLADLIENNTHSLTL 436          
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Match: A0A7S0QEX0_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEX0_9CRYP)

HSP 1 Score: 148 bits (374), Expect = 2.630e-42
Identity = 72/127 (56.69%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    1 LLTPTLRNANMHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAILPPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEFLRDLADLLENNCAQLLL 381
            L+TP +R+AN+  + +++ QWK LVGKAK  KL P + + GTF ++NLGM+GVS F AILPP TG+ILA+GG+ PVV  R +G+   V++M VT+T DHRHIYGAD+A+FL+DLADLLEN    ++L
Sbjct:  115 LITPVIRDANVLDVTSLNAQWKELVGKAKAGKLRPEEFSSGTFTVSNLGMFGVSHFGAILPPGTGAILAVGGATPVVQVR-NGAAVEVRQMEVTLTADHRHIYGADSAQFLKDLADLLENRVLDIVL 240          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig565.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD66_9PHAE1.630e-5270.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7H2_9STRA1.260e-5069.29Dihydrolipoamide acetyltransferase component of py... [more]
K8YSL5_NANGC5.000e-4965.87Pyruvate dehydrogenase E2 component (Dihydrolipoam... [more]
A0A7S2DNK3_9STRA3.090e-4664.29Dihydrolipoamide acetyltransferase component of py... [more]
W7TSZ8_9STRA1.320e-4566.94Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S0ECH2_9EUKA4.070e-4355.56Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S0Q6Z1_9EUKA4.690e-4355.91Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2C0G0_9STRA7.630e-4359.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B1XLG5_SYNP21.860e-4259.84Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S0QEX0_9CRYP2.630e-4256.69Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig565contigP-wetherbeei_contig565:1..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog32049.SYNPCC7002_A0110
Preferred namepdhC
PFAMs2-oxoacid_dh,Biotin_lipoyl,E3_binding
Model size384
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.27e-39
EggNOG OGsCOG0508@1|root,COG0508@2|Bacteria,1G0GX@1117|Cyanobacteria,1GZ03@1129|Synechococcus
EC2.3.1.12
DescriptionDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Cds size354
COG categoryC
BiGG ReactioniJN678.odhB
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.676932-UTR-P-wetherbeei_contig565:0..301683186839.676932-UTR-P-wetherbeei_contig565:0..30Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig565 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.6893218-CDS-P-wetherbeei_contig565:30..3841683186839.6893218-CDS-P-wetherbeei_contig565:30..384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig565 31..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig565.1.1prot_P-wetherbeei_contig565.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig565 31..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig565.1.1

>prot_P-wetherbeei_contig565.1.1 ID=prot_P-wetherbeei_contig565.1.1|Name=mRNA_P-wetherbeei_contig565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MHGLLTMSQQWKALVGKAKDRKLAPADNAGGTFVITNLGMYGVSEFAAIL
PPNTGSILAIGGSLPVVAARPDGSFGVVKEMTVTITCDHRHIYGADAAEF
LRDLADLLENNCAQLLL*
back to top

mRNA from alignment at P-wetherbeei_contig565:1..384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig565.1.1 ID=mRNA_P-wetherbeei_contig565.1.1|Name=mRNA_P-wetherbeei_contig565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig565:1..384+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGACGCCAACGCTGCGCAACGCCAACATGCACGGCCTGCTGACAAT GTCGCAGCAGTGGAAGGCGCTCGTCGGCAAGGCGAAGGACCGCAAGTTGG CGCCGGCCGACAACGCCGGCGGCACTTTCGTCATCACCAACCTCGGCATG TACGGTGTGTCGGAGTTCGCCGCGATCCTGCCGCCTAACACTGGGTCCAT CCTGGCCATCGGCGGGTCGCTGCCGGTTGTCGCCGCCCGGCCGGACGGGT CGTTCGGCGTCGTCAAGGAGATGACGGTGACGATCACGTGCGACCACCGG CACATCTACGGCGCCGATGCGGCAGAATTCCTCAGGGATCTCGCGGACCT GCTGGAGAACAACTGTGCCCAGCTGCTGCTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig565:1..384+

>mRNA_P-wetherbeei_contig565.1.1 ID=mRNA_P-wetherbeei_contig565.1.1|Name=mRNA_P-wetherbeei_contig565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig565:1..384+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGCCTGCTGACAATGTCGCAGCAGTGGAAGGCGCTCGTCGGCAA
GGCGAAGGACCGCAAGTTGGCGCCGGCCGACAACGCCGGCGGCACTTTCG
TCATCACCAACCTCGGCATGTACGGTGTGTCGGAGTTCGCCGCGATCCTG
CCGCCTAACACTGGGTCCATCCTGGCCATCGGCGGGTCGCTGCCGGTTGT
CGCCGCCCGGCCGGACGGGTCGTTCGGCGTCGTCAAGGAGATGACGGTGA
CGATCACGTGCGACCACCGGCACATCTACGGCGCCGATGCGGCAGAATTC
CTCAGGGATCTCGCGGACCTGCTGGAGAACAACTGTGCCCAGCTGCTGCT
CTGA
back to top