mRNA_P-wetherbeei_contig5630.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5630.2.1
Unique NamemRNA_P-wetherbeei_contig5630.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A835YIR5_9STRA (Clathrin light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.930e-31
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   73 FMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKNDPL 387
            FMG+WEA+L+EKA  E+  + +A +AAR + +KF A+R   +E +M  NRTQEQVFLEQLE+DLES+NPWER+V+LVDTQA+ S  F+D  R++++ IQLKNDP+
Sbjct:   96 FMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPI 200          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: D7G9H3_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9H3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.770e-30
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   46 LSPSAAGSDFMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKNDPLE 390
            + PSA   +FM +W+A L EKA +E + +A A EAA+ +      +RAA +EAKM QNR QEQ+FLEQLE +LES+NPWERVV+LVDTQ++V ++F+D  RM SI IQLKNDP++
Sbjct:  106 VEPSAL-DEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQIFLEQLEGELESENPWERVVSLVDTQSEVVEDFKDTSRMTSILIQLKNDPID 219          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A7S3Y6V3_HETAK (Clathrin light chain n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6V3_HETAK)

HSP 1 Score: 111 bits (278), Expect = 1.560e-27
Identity = 64/108 (59.26%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   70 DFMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKNDPLEV 393
            DFM +WE  LREK  +E+Q   EAK+ A+ E + F A +    EAKM++NR++EQV LEQLEADLESDNPWER+ NLVD QA+   +  D  RMRSI IQLKN+PLEV
Sbjct:  153 DFMDKWEQELREKRAVEEQAAEEAKQKAKAELDHFYAQKEKTFEAKMSKNRSEEQVLLEQLEADLESDNPWERITNLVDLQAE--GDDVDKSRMRSILIQLKNEPLEV 258          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A7R9VTD9_9STRA (Clathrin light chain n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VTD9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.080e-18
Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   34 LLPCLSPSAAGSDFM----GQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKNDP 384
            LLP   P   G   M     +W+  L+E+   E   +AEA EAAR E  KF A+R A RE +MA+NR  EQ  LE +EADLE+DN W+RVV LV+   D  +   D  RMR + I LKN+P
Sbjct:  113 LLPEPEPEEKGPSPMQKWNDEWQVTLKERKDAENAAKAEAVEAARVELEKFQAERDARRETRMAKNRADEQDKLEAIEADLENDNSWQRVVKLVELTHDTVEGAADVHRMRDVMITLKNEP 233          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A7S2GYA0_9STRA (Clathrin light chain n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GYA0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.510e-18
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   40 PCLSPSAAGSDFMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKNDP 384
            P LSP A  ++   +W+  L ++   E   +A+  E AR +  KF A+R A REAKMA+NR++EQ  LE LEADLE+DN W+RVV LV+   D ++  +D  RM+ +FI LKN+P
Sbjct:   96 PELSPMAKWNN---EWQVTLMQRKDEENAAKAKDVEQARVDLEKFQAEREARREAKMARNRSEEQDKLEALEADLENDNSWQRVVKLVELTQDSAEASEDTKRMKDVFILLKNEP 207          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: K3X3M0_GLOUD (Clathrin light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3M0_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 9.250e-18
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 1
Query:    4 RVGSLPACWLLLPCLSPSAAGSDFMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQAD--------------------------VSKEFQDAGRMRSIFIQLKNDPLEVHRAIS 408
            R  S       +P +      + FM ++E R+ EKA  +++   E+KE A+++  KF+A+R+ ++E+K   NR  EQ  LE+L ADLES+NPWERVV+LV+ +A+                            +E +D  RMR +F+QLK +PL+  RAI+
Sbjct:  131 RTSSFGQSGAQIPVIEEENELTKFMREYEQRIAEKAVEQEKVAVESKEKAQQDMEKFVAERSRIKESKQQANRVHEQATLEKLAADLESENPWERVVSLVELEANRKQKLAALNAKKDAKNKEADAPKAAKKDEEEEDVSRMRQLFVQLKAEPLDKTRAIA 291          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A2D4BVD7_PYTIN (Clathrin light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVD7_PYTIN)

HSP 1 Score: 82.8 bits (203), Expect = 1.150e-16
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   13 SLPACWLLLPCLSPSAAGSDFMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEF-------------------------QDAGRMRSIFIQLKNDPLEVHRA 402
            ++P     +P +      + FM Q+EA + +KA  +++   E KE A+K+ ++F  +R+  +E+K   NR QEQ  LE+L ADLES+NPWERVV+LVD + +  ++                          +D  RMR +F+QLK +PL+  RA
Sbjct:   83 AVPEPMASMPAVEEDNELTKFMRQYEAEIAQKAQEQEKVGVECKEKAKKDMDQFQTERSRKKESKQQANRVQEQATLEKLAADLESENPWERVVSLVDLEVNRKQKLAALNNKKDAKNKEPEPVKSSKKEDEEDLSRMRQLFVQLKAEPLDKTRA 237          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A7S0G9F9_9STRA (Clathrin light chain n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G9F9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.270e-16
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   73 FMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKND 381
            F  +W+  LRE+   E   +AE    ++KE   F   R   RE +MA+NR+ EQ  LE LEADLE+DN W+RVV +V+ QAD  +  +D  RMR + I LKND
Sbjct:   60 FADEWQVILRERKDHENSSKAEVVMESQKEMELFHERRDKTRETRMAKNRSDEQSKLESLEADLENDNSWQRVVKMVELQADTVEASEDTKRMRDVLISLKND 162          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A8K1CW16_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CW16_PYTOL)

HSP 1 Score: 80.5 bits (197), Expect = 8.140e-16
Identity = 53/149 (35.57%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   37 LPCLSPSAAGSDFMGQWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQAD-------------------------VSKEFQDAGRMRSIFIQLKNDPLEVHRAIS 408
            +P +      + FM ++E  +  KA  +++   E KE A+ +  +F A+R+ ++E+K   NR QEQ  LE+L  DLES+NPWERVV+LVD + +                           +E +D  RMR +F+QLK DPLE  RA S
Sbjct:   83 VPVIEEENELTKFMRKYEGEIAAKAQEQEKVGVECKEKAKHDMEQFTAERSRIKESKQQSNRVQEQATLEKLALDLESENPWERVVSLVDLETNRKQKLAALNAKKDGKNKEAEAPKPVKKEEEEDVSRMRQLFVQLKADPLEKTRAAS 231          
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Match: A0A7S4HN92_9STRA (Clathrin light chain n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HN92_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.260e-15
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   82 QWEARLREKATLEKQKEAEAKEAARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNLVDTQADVSKEFQDAGRMRSIFIQLKNDP 384
            +W+  L+E+   E  ++AE  E AR +   F  +R   RE +M++NRT EQ  LE +EADLE+DN W+RVV LV+   D   +  D  RMR + IQLKN+P
Sbjct:  133 EWQVTLKERKDNENAEKAEVVEQARADLENFQTERDTRREQRMSKNRTDEQEKLEAIEADLENDNSWQRVVKLVELTHDNVDDAADVARMRDVLIQLKNEP 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5630.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIR5_9STRA1.930e-3158.10Clathrin light chain n=1 Tax=Tribonema minus TaxID... [more]
D7G9H3_ECTSI2.770e-3056.52Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S3Y6V3_HETAK1.560e-2759.26Clathrin light chain n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9VTD9_9STRA2.080e-1846.28Clathrin light chain n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2GYA0_9STRA3.510e-1846.09Clathrin light chain n=1 Tax=Helicotheca tamesis T... [more]
K3X3M0_GLOUD9.250e-1834.78Clathrin light chain n=1 Tax=Globisporangium ultim... [more]
A0A2D4BVD7_PYTIN1.150e-1634.19Clathrin light chain n=1 Tax=Pythium insidiosum Ta... [more]
A0A7S0G9F9_9STRA3.270e-1645.63Clathrin light chain n=1 Tax=Proboscia inermis Tax... [more]
A0A8K1CW16_PYTOL8.140e-1635.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4HN92_9STRA1.260e-1544.55Clathrin light chain n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5630contigP-wetherbeei_contig5630:2558..3718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G9H3
Preferred nameCLC
PFAMsClathrin_lg_ch
Model size411
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue4.54e-31
EggNOG OGs2CBIT@1|root,2S8RD@2759|Eukaryota
Ec32 ortholog descriptionClathrin light chain
Ec32 orthologEc-28_000910.1
DescriptionClathrin light chain
Cds size411
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.6626182-CDS-P-wetherbeei_contig5630:2557..27341683186837.6626182-CDS-P-wetherbeei_contig5630:2557..2734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5630 2558..2734 -
1683186837.6783316-CDS-P-wetherbeei_contig5630:3137..32211683186837.6783316-CDS-P-wetherbeei_contig5630:3137..3221Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5630 3138..3221 -
1683186837.6876004-CDS-P-wetherbeei_contig5630:3568..37181683186837.6876004-CDS-P-wetherbeei_contig5630:3568..3718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5630 3569..3718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5630.2.1prot_P-wetherbeei_contig5630.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5630 2558..3718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5630.2.1

>prot_P-wetherbeei_contig5630.2.1 ID=prot_P-wetherbeei_contig5630.2.1|Name=mRNA_P-wetherbeei_contig5630.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
GRVGSLPACWLLLPCLSPSAAGSDFMGQWEARLREKATLEKQKEAEAKEA
ARKERNKFMADRAAMREAKMAQNRTQEQVFLEQLEADLESDNPWERVVNL
VDTQADVSKEFQDAGRMRSIFIQLKNDPLEVHRAIS*
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mRNA from alignment at P-wetherbeei_contig5630:2558..3718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5630.2.1 ID=mRNA_P-wetherbeei_contig5630.2.1|Name=mRNA_P-wetherbeei_contig5630.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig5630:2558..3718- (Phaeothamnion wetherbeei SAG_119_79)
GGTCGGGTTGGCTCCCTCCCAGCTTGTTGGCTCCTCCTGCCTTGTCTCTC TCCCTCTGCTGCCGGCAGCGACTTCATGGGGCAGTGGGAGGCGCGGCTGC GGGAGAAGGCGACGCTCGAGAAGCAGAAGGAGGCGGAGGCCAAGGAGGCG GTGAGTGCCGCGACACGTTCCTTTGCTCTGCTTCGTTTCCTTTCTCTTCC GTCTGTCGCCGTGGCGCATGTTGATGTGATTGCAATGAGATGGCAAACGA GGACGGGTCTTATCATGGGCTCAGTTTGTTTTTTGCTTCGACAAATCTGT GGTACGGAGTGAGAGTCTTGCAGCCCCTCTGCTCGTTCCTTTCTTCAGCA GCCCCACTCCTCCCTCAGAGCAAGAACCTTGCGGACGTCGTCGTTGTTTG CTGTGACGGCATTGTACTGAATGTATCTCGGGAGTGAAGTCGCCGCGTAT TGAAACGGCGCCAAAATGGCTCCCGAAAAATGGCACCAAAAGTACAGGCC CGGAAGGAGCGCAACAAGTTCATGGCAGACCGCGCAGCGATGCGGGAGGC GAAGATGGCGCAGAACCGGACACAAGAGCAGGTGCGGCAGCTTGCCGCGG TAGTCGCAACCGCTGCTTTTCATTCCTCACAGTTGTGATTCGTAGGGCGT TCGGGGTAAATTTTGGTGGCGTAGGCCTGGTGATTTGGGAAGGAGCGAAT GAGGAGTGACGTTCCACCCGGAGCCACCGCTCCTGTATCTGCCGGGCGGG CAAGCGAGAGCCGAGTCTGTGCCATTCTTGCAGTCAGCGGCCGGCCGTGC CTTGTGTCGCTCGTCTCACTTACCTCACGGCGGATCTCATCGCGCGTGCC ATCCCCTCCCTTCCTTGTTGTTTCTGCGGCAAGGTTGAACCTCTGCCCGT GCTTTTTTGATTTTACCTCTAGAGCCCCGACCCTCAGAGACCCCAATCCC TTTGTTCACCGCCCCTTTCCTTCCTTTTGCAAAGGTGTTCCTGGAGCAGC TGGAAGCGGACCTCGAGTCGGACAACCCGTGGGAGCGCGTGGTGAACCTC GTCGACACGCAGGCGGACGTCTCCAAGGAGTTCCAGGACGCTGGCAGGAT GCGCTCCATCTTCATACAGCTCAAGAACGATCCCCTCGAGGTGCATCGTG CAATCAGTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5630:2558..3718-

>mRNA_P-wetherbeei_contig5630.2.1 ID=mRNA_P-wetherbeei_contig5630.2.1|Name=mRNA_P-wetherbeei_contig5630.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig5630:2558..3718- (Phaeothamnion wetherbeei SAG_119_79)
GGTCGGGTTGGCTCCCTCCCAGCTTGTTGGCTCCTCCTGCCTTGTCTCTC
TCCCTCTGCTGCCGGCAGCGACTTCATGGGGCAGTGGGAGGCGCGGCTGC
GGGAGAAGGCGACGCTCGAGAAGCAGAAGGAGGCGGAGGCCAAGGAGGCG
GCCCGGAAGGAGCGCAACAAGTTCATGGCAGACCGCGCAGCGATGCGGGA
GGCGAAGATGGCGCAGAACCGGACACAAGAGCAGGTGTTCCTGGAGCAGC
TGGAAGCGGACCTCGAGTCGGACAACCCGTGGGAGCGCGTGGTGAACCTC
GTCGACACGCAGGCGGACGTCTCCAAGGAGTTCCAGGACGCTGGCAGGAT
GCGCTCCATCTTCATACAGCTCAAGAACGATCCCCTCGAGGTGCATCGTG
CAATCAGTTAG
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