mRNA_P-wetherbeei_contig5629.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5629.1.1
Unique NamemRNA_P-wetherbeei_contig5629.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A7R9YFX6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFX6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.740e-30
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  150 LSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDAY 545
            LSSLPLQ+LVYF+GW+S  +FL+ + L++YK Y +++       +L+ +   +++ +ARLF  SKGNKTE    LL  + LT P+ + Y +LL LQTYVLR+D+++ S+ +AF GLE L+   T   F  AY
Sbjct:   11 LSSLPLQVLVYFNGWFSTLFFLLALALFLYKRYSFFYAGNSFAWDLTMLFFLSVVDFARLFLASKGNKTEHAGALLWFICLTAPICVGYAYLLTLQTYVLRLDVVLCSLGLAFVGLEGLIGIFTCVQFMRAY 142          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A6U4EE63_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EE63_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.940e-30
Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  150 LSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDAY 545
            LSSLPLQILVYF+GW+S  +FL+ I L++YK Y  Y+     G +L+ + L  +L   RLF  SKGNKTE    L+  + LTVP+ + Y +LL LQTYVLR+D+++ S+ + F G E L++  T   F  AY
Sbjct:   15 LSSLPLQILVYFNGWFSTMFFLLGIALFLYKRYNLYYAGNGFGWDLAMLFLMTVLDALRLFLGSKGNKTEHAGALMWFIFLTVPICVGYAYLLTLQTYVLRIDVVLCSLGLIFVGFECLISIFTCVQFLRAY 146          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A7S0ETP7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETP7_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 2.900e-28
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  135 GHAVILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSK---DLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDA 542
            G + +LSSLPLQIL +F+GWY   + +    LY +K     +P +    LGLE++ V L A++++AR+F  +KGNKTE   PLL+SLVL VP ++  V+ L LQ YV R D+++ +I++AF GLE LL+C T  TF  A
Sbjct:    6 GGSAMLSSLPLQILFFFNGWYDVAFTIAMSSLYAWKGSTLPYPDELRPMLGLEVAIVFLLAIIEYARIFLGTKGNKTEQSGPLLMSLVLGVPAMIANVYFLRLQIYVTRADLVLNAISIAFVGLEILLSCLTIITFAKA 144          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A6U1LNY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1LNY5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.470e-28
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 3
Query:  147 ILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDAYH 548
            ILSSLPLQIL+YF+ W+   +   N C ++YK   YY+P     +E++ V ++A++QWARLF  SK NKTE L+P++ SL+LT   V  Y + +  Q YVLRVD+I+ +I + F  LE       A+ F  A +
Sbjct:   10 ILSSLPLQILIYFENWFVLGFTAFNACAFVYKGSSYYYPKYMWPVEVATVLVFAVVQWARLFLASKSNKTEMLRPMIWSLLLTPCSVTAYWYFIYAQLYVLRVDVIMNAIGIVFVALELPFQLVAAFHFSTAIY 143          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A2V0NLL2_9CHLO (Transmembrane protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLL2_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 2.820e-27
Identity = 57/139 (41.01%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  117 MKPGEAGHAVILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTF 533
            M PG A    +L+SLPLQ+ +YF GW+ A ++++++ L+IYK     +P      E + V L+ L++  RLF  SKGNKTE   PLL SL+L VP+V   V+ +  QTYVL++++++ +I+++F GL+ LL C     F
Sbjct:    1 MHPGTARARPVLTSLPLQVFIYFGGWWDALFWVLSVALFIYKGLALPYPPGRFAAEFTFVWLWLLVEPGRLFLGSKGNKTEQPGPLLFSLLLAVPIVAFLVYHVKFQTYVLKLEVLLNAISLSFLGLQVLLGCLATARF 139          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A7S3RB10_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RB10_DUNTE)

HSP 1 Score: 109 bits (273), Expect = 1.650e-26
Identity = 52/132 (39.39%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  147 ILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDA 542
            +L+SL LQIL++F  W++ FY+++NI +++YK     +P ++  +E S   LY +L+  RLF  +KGNK E + P++ SL+L +P++ +Y + +  QTYVL++D+I+  IA+ F GL+ LL+   A+ F  A
Sbjct:   64 VLTSLTLQILIFFSIWWNCFYYVLNILVFVYKGLVLPYPQQNFDMEFSFAWLYIILEIPRLFLVTKGNKAEQVVPIVFSLILALPLLAMYAYFIDFQTYVLKIDLILNGIALGFIGLQVLLSIFAAYRFATA 195          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: UPI001401FB94 (transmembrane protein 216-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401FB94)

HSP 1 Score: 103 bits (258), Expect = 6.850e-25
Identity = 56/130 (43.08%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  144 VILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTF 533
            +ILSS+PLQ L++ +GWY  F+F+    ++IYK     +PS +L L++  + +  L++  R+F  SKGN TE   PL + + LTVP V+L V+LL LQTYVLRV++I+  I +A  G E +L+     TF
Sbjct:    9 MILSSVPLQFLLFLNGWYLGFFFIAEALIFIYKGQVLPYPSSNLALDIILLFVLTLIEIFRIFFCSKGNLTERKVPLSVGVGLTVPAVVLSVYLLLLQTYVLRVEVIINGILLALHGAELILSIVAIGTF 138          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A5B8MHQ0_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MHQ0_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.360e-24
Identity = 54/123 (43.90%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  147 ILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKD-LGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLA 512
            +++S+P QIL++F  +Y A + L+ I ++IYK Y   +PS +  G ELS VC+  +++  RLF  SKGNKT+ + PLL   VL++PV++LY++ + LQTYVL++D  +  + V F GL+ LLA
Sbjct:    7 LVASVPFQILLHFGAYYDALFVLVTIGVFIYKGYYLPYPSANSFGTELSLVCILPVIEACRLFIGSKGNKTQTIGPLLTFCVLSLPVLILYIYYIELQTYVLKIDHFLSIVGVVFLGLQLLLA 129          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: UPI001C66CCB9 (transmembrane protein 80 isoform X2 n=2 Tax=Tetraoninae TaxID=466585 RepID=UPI001C66CCB9)

HSP 1 Score: 101 bits (252), Expect = 4.980e-24
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 3
Query:  147 ILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLL 509
            +LSS+PLQIL Y +G+Y  FYF++ + + IYK   + +P   L  +L+ +C+ A+L+  RL+  SKGN TE   PL LSLV+TV  ++L V+ L  QTYVL+ D+I+ ++ +   GLES+L
Sbjct:   12 VLSSVPLQILFYINGFYYIFYFVVTLAMIIYKSQVFSYPDDFLAPDLALICIMAVLEVLRLYLGSKGNLTEEEAPLGLSLVITVGSMILSVYFLTWQTYVLKADVIINTVLLFIYGLESVL 132          
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Match: A0A383WL38_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WL38_TETOB)

HSP 1 Score: 100 bits (248), Expect = 2.320e-23
Identity = 53/144 (36.81%), Postives = 90/144 (62.50%), Query Frame = 3
Query:  117 MKPGE--AGHAVILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPSKDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLYVFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDA 542
            M+PGE  A    IL+SLPLQI +YF GW+   +++++I ++IYK +   +P +    E     L+ +++  RLF  SKGNKTE   PL+ S++L+ P++  +V+ L  QTY+L+V++++ +I++AF  ++ L     A  F  A
Sbjct:    1 MQPGEGSARSRPILTSLPLQIFIYFGGWWDVLFWVLSILVFIYKGFTLPYPPQKFAAEFVVQWLFLIVEPTRLFLGSKGNKTEQSGPLMFSVLLSCPMIAFFVYFLQYQTYILKVEVLLNAISLAFCCIQVLFGMLAAVRFVQA 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9YFX6_9STRA3.740e-3044.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4EE63_9STRA5.940e-3046.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0ETP7_9EUKA2.900e-2846.04Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6U1LNY5_9STRA9.470e-2843.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2V0NLL2_9CHLO2.820e-2741.01Transmembrane protein n=1 Tax=Raphidocelis subcapi... [more]
A0A7S3RB10_DUNTE1.650e-2639.39Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
UPI001401FB946.850e-2543.08transmembrane protein 216-like n=1 Tax=Petromyzon ... [more]
A0A5B8MHQ0_9CHLO1.360e-2443.90Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
UPI001C66CCB94.980e-2444.63transmembrane protein 80 isoform X2 n=2 Tax=Tetrao... [more]
A0A383WL38_TETOB2.320e-2336.81Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5629contigP-wetherbeei_contig5629:118..1307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002952957.1
PFAMsTransmemb_17
Model size610
Max annot lvl3041|Chlorophyta
KEGG koko:K19385
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.81e-28
EggNOG OGsKOG4502@1|root,KOG4502@2759|Eukaryota,381NE@33090|Viridiplantae,34N1R@3041|Chlorophyta
DescriptionPredicted membrane protein
Cds size438
COG categoryS
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.241068-UTR-P-wetherbeei_contig5629:117..1731683186837.241068-UTR-P-wetherbeei_contig5629:117..173Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5629 118..173 -
1683186837.2950096-UTR-P-wetherbeei_contig5629:1191..13071683186837.2950096-UTR-P-wetherbeei_contig5629:1191..1307Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5629 1192..1307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.2648604-CDS-P-wetherbeei_contig5629:173..3401683186837.2648604-CDS-P-wetherbeei_contig5629:173..340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5629 174..340 -
1683186837.276577-CDS-P-wetherbeei_contig5629:583..6811683186837.276577-CDS-P-wetherbeei_contig5629:583..681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5629 584..681 -
1683186837.2859569-CDS-P-wetherbeei_contig5629:1018..11911683186837.2859569-CDS-P-wetherbeei_contig5629:1018..1191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5629 1019..1191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5629.1.1prot_P-wetherbeei_contig5629.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5629 174..1191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5629.1.1

>prot_P-wetherbeei_contig5629.1.1 ID=prot_P-wetherbeei_contig5629.1.1|Name=mRNA_P-wetherbeei_contig5629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MKPGEAGHAVILSSLPLQILVYFDGWYSAFYFLINICLYIYKDYKYYFPS
KDLGLELSCVCLYALLQWARLFSTSKGNKTEALQPLLLSLVLTVPVVLLY
VFLLCLQTYVLRVDIIVGSIAVAFAGLESLLACTTAWTFHDAYHR*
back to top

mRNA from alignment at P-wetherbeei_contig5629:118..1307-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5629.1.1 ID=mRNA_P-wetherbeei_contig5629.1.1|Name=mRNA_P-wetherbeei_contig5629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1190bp|location=Sequence derived from alignment at P-wetherbeei_contig5629:118..1307- (Phaeothamnion wetherbeei SAG_119_79)
CGACGCTGCCACGATTTTGCTGCGAAATATGTAACGGAGCTGTGGGGGAA AATTGGCTGAAAAGTTTCCTTCCCCGCGCTTCTTCCTCGCGACAGCACTC TCATCCTGCGAGCGACATGAAGCCCGGAGAGGCCGGCCACGCCGTGATCT TGTCCTCTCTCCCTCTCCAGATTCTTGTGTACTTTGACGGCTGGTACAGC GCCTTCTACTTTCTGATCAACATTTGCTTGTATATATACAAAGACTACAA ATACTACTTCCCAAGCAAGGATCTCGGGCTGGAGCTGAGGTGAGGTTTGC CATGGTACTTTTCGATGGTCTGTGTACATGGCGTATCTTTGCCCTTTACA ACCACGTTCGACGAAGCAATAATGAGCCTCTTTTTCGTGCTCACTTGTAA GAAGAAAGCATTCTTCACGGCATGGATAAGAATTCTCTGAAATCTCCAAC TGTATCACTGCTTTGAAAACCACCAGCAAGCGAAGACAAAGCGGCTATGT TCGCTGTTCGCTTTCCCAAGCGCTACGAAAGGTTGTGTTGAGTAAGGTTC AATTGATCATAATCTGAAACCCACCTTACCGCCCAATTCTTGCACCTCCC CTTCATGCGGCATATCGATACCGCAGCTGTGTGTGTCTTTACGCACTGCT CCAATGGGCGCGGCTCTTCTCCACCAGCAAGGGCAACAAGACCGAGGCAT TGCAGCCTCTCCTGCTTTCACTAGGTGAGCTCAGATCGGCTCGAACCACA ACCAGCCATCCGACGGACCAGCGACCCACCGCCACCAGCAATCACTTTTC CCGGGGCCGAGAGGGAGCCGCCAATAAATGATAGGACTCTTGGCGCGGAA ATGGATTGCCACGTATTGCTGAAACGGCCTTGGTCAACCCTCCCTCCCTC CCTCCCTCCCTCCGTCCATACAACAACCCTCGATTCATTGCTCCAAAATT CTCTCGCGGCGCTGCAGTTCTGACGGTACCGGTGGTGCTGCTGTACGTGT TTCTGCTCTGCCTGCAGACTTACGTGCTGCGTGTCGACATCATCGTCGGC AGCATCGCCGTCGCCTTCGCCGGCCTCGAGTCACTCTTAGCGTGCACCAC CGCCTGGACTTTCCACGATGCCTACCACAGATGACGGCGGGCGGACGACT CCTATCAAATATCTTAAAATGGAATTACACAGTCACTGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5629:118..1307-

>mRNA_P-wetherbeei_contig5629.1.1 ID=mRNA_P-wetherbeei_contig5629.1.1|Name=mRNA_P-wetherbeei_contig5629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig5629:118..1307- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCCCGGAGAGGCCGGCCACGCCGTGATCTTGTCCTCTCTCCCTCT
CCAGATTCTTGTGTACTTTGACGGCTGGTACAGCGCCTTCTACTTTCTGA
TCAACATTTGCTTGTATATATACAAAGACTACAAATACTACTTCCCAAGC
AAGGATCTCGGGCTGGAGCTGAGCTGTGTGTGTCTTTACGCACTGCTCCA
ATGGGCGCGGCTCTTCTCCACCAGCAAGGGCAACAAGACCGAGGCATTGC
AGCCTCTCCTGCTTTCACTAGTTCTGACGGTACCGGTGGTGCTGCTGTAC
GTGTTTCTGCTCTGCCTGCAGACTTACGTGCTGCGTGTCGACATCATCGT
CGGCAGCATCGCCGTCGCCTTCGCCGGCCTCGAGTCACTCTTAGCGTGCA
CCACCGCCTGGACTTTCCACGATGCCTACCACAGATGA
back to top