mRNA_P-wetherbeei_contig56220.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56220.1.1
Unique NamemRNA_P-wetherbeei_contig56220.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: A0A350SMZ8_9BURK (Porin_4 domain-containing protein n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A350SMZ8_9BURK)

HSP 1 Score: 241 bits (616), Expect = 4.630e-77
Identity = 114/172 (66.28%), Postives = 137/172 (79.65%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARS 516
            SWVGLSGGFG+ K GKTDSV+KDIYDLG THNVFDSEFTATKEA+RAGLG FTSRPNNQVRY++P F G SAGLT++L ED A     +AI++RY  G LD+G A Q++D   LA+DR++T  + TYNFG  R+S  YQ  +AGDNRKDNE  LGVS+P+G+ DLSAGY +S
Sbjct:   93 SWVGLSGGFGSFKLGKTDSVYKDIYDLGNTHNVFDSEFTATKEAFRAGLGNFTSRPNNQVRYDSPNFDGLSAGLTHSLHEDSATAPDISAIDVRYRTGSLDLGLAHQDEDSANLADDRKFTALTATYNFGMARVSALYQQVKAGDNRKDNELGLGVSIPIGSFDLSAGYGQS 264          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: UPI0010F45B85 (porin n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0010F45B85)

HSP 1 Score: 226 bits (576), Expect = 5.360e-71
Identity = 110/174 (63.22%), Postives = 131/174 (75.29%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVF-DSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            SWVGLSGGFG V+ GK DS++KDI DLG T+N+  DS F +  EAYRAGL  F +RPNNQ+RY++P FGGF+AGLTYALDEDVA   Q TAI  RY  G LD+GF  Q +D  + ANDR++   + TYNFG  R+S  YQ  +AGDNRKDNE ALGV VPLGN DL+AGY+RSK
Sbjct:   93 SWVGLSGGFGTVRMGKADSIYKDINDLGNTYNISPDSLFNSAAEAYRAGLATFVNRPNNQIRYDSPDFGGFTAGLTYALDEDVAGTPQVTAIAARYRVGKLDVGFGYQNEDQLLRANDRKHRAVAATYNFGPARVSTHYQNVKAGDNRKDNEVALGVGVPLGNWDLTAGYSRSK 266          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: A0A2N2TP24_9PROT (Porin n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-16 TaxID=2013707 RepID=A0A2N2TP24_9PROT)

HSP 1 Score: 206 bits (523), Expect = 5.540e-63
Identity = 97/173 (56.07%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            SWVGLSGGFGAV+ G  DS +KDIYD+G ++NVFDS FT T  AY AG+G +TSRP+N +RY+TP FGGFS GL+ ALDE    +    A+NLRY AG LD+G   Q+    V+A++R+Y V +  Y+F  VR+SGQYQ+ E G+  +DNE+A+GV++PLG  +LSAGYA  K
Sbjct:   97 SWVGLSGGFGAVRAGLLDSAYKDIYDMGNSNNVFDSAFTPTNVAY-AGVGNYTSRPSNHIRYDTPSFGGFSGGLSVALDETAGVSNDANAVNLRYRAGGLDVGLGVQKQKNSVVADERDYRVIAAAYDFKVVRVSGQYQVAEQGNGLEDNEYAIGVTMPLGAFELSAGYAMGK 268          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: A0A0T2YKL0_9BURK (Porin_4 domain-containing protein n=2 Tax=unclassified Hydrogenophaga TaxID=2610897 RepID=A0A0T2YKL0_9BURK)

HSP 1 Score: 203 bits (516), Expect = 6.290e-62
Identity = 99/177 (55.93%), Postives = 120/177 (67.80%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTA----TKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            SWVGLSGGFG V  G  DS FKD +DLG T+N+FDSEFTA    T+ A    +G FTSRP +Q+RY++PKFGGFS   +YA D+     +   A +LRY+ GPLD+    Q+ +    ANDR+YTV SG YNFGA RLS QYQ  E   N KDN+FA+GVSVP G  DLSAG A S+
Sbjct:   92 SWVGLSGGFGGVTMGLRDSAFKDAFDLGNTYNLFDSEFTAGKASTEGASAVNVGNFTSRPTSQIRYDSPKFGGFSGAYSYAFDQTAGTESDIQAFHLRYAGGPLDVALGFQQQNSATAANDRDYTVLSGLYNFGAFRLSAQYQNAETASNLKDNDFAIGVSVPFGAFDLSAGIATSE 268          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: A0A1Y2R2A6_9BURK (Porin_4 domain-containing protein n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R2A6_9BURK)

HSP 1 Score: 201 bits (511), Expect = 4.840e-61
Identity = 97/183 (53.01%), Postives = 128/183 (69.95%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGG-------FTSRPNNQVRYETPKFGGFSAGLTYALDEDVA---ANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            SWVGLSGGFGAV+ G  DS +KDIYD+GV++N++DSEFT TK AY +G  G       FTSRP+N VRY++P FGGFS  + YA DE+ A    N++ TA+NLRY +GPLD+G A Q+        DR +TV +  YNFG VR+SGQYQIT+  +  +D +++ GV+VP GN D+SAG+   K
Sbjct:   97 SWVGLSGGFGAVRLGLMDSPYKDIYDMGVSNNLYDSEFTPTKIAYLSGAVGTASGVSDFTSRPSNMVRYDSPSFGGFSGSVGYAFDENTAPVTTNSEITALNLRYRSGPLDVGLAYQDQKNATATLDRNFTVLAAAYNFGMVRVSGQYQITDQSNGLEDRDYSFGVTVPFGNFDVSAGFGSGK 279          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: UPI0008266EEA (porin n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI0008266EEA)

HSP 1 Score: 195 bits (495), Expect = 8.210e-59
Identity = 96/173 (55.49%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            S VGLSGGFGAVK G+ D+ F DI DL V+ N++DSEF++TK AY AG+  ++SR +NQ+RYE+P FGGFS G +Y LDED    A TTA NLRY AG LD+G   Q+      AN REYT  +G YNFG  RLS  Y   E  +  K N + +GV+VP+GN+DLS GYA SK
Sbjct:   95 SIVGLSGGFGAVKLGRHDTSFDDIRDLSVSSNLWDSEFSSTKIAYTAGVADYSSRASNQIRYESPSFGGFSVGASYGLDEDATVKADTTAFNLRYKAGNLDVGVGYQDQK----ANSREYTTVAGAYNFGVARLSAGYNRAEIKNGNKANGYTIGVNVPMGNIDLSVGYAYSK 263          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: A0A6P1J0A0_9BURK (Porin n=3 Tax=unclassified Hydrogenophaga TaxID=2610897 RepID=A0A6P1J0A0_9BURK)

HSP 1 Score: 189 bits (480), Expect = 7.880e-56
Identity = 95/175 (54.29%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAA-NAQTTAINLRYSAGPLDIGFARQEDDFQVL-ANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            SWVGLSGGFGAVK G++D+ F DI DL V+ N++DSEFT TK AY AG+  ++SR +NQ+RYE+P F GFS G+ Y LDE  +       + NLRY AG LD+G  RQE   +   A DREYT  SG YNFG  R+S  +   E G N +DNE ++GV+VPLG  ++S GYARSK
Sbjct:  154 SWVGLSGGFGAVKIGRSDTSFDDIRDLAVSSNLWDSEFTPTKIAYTAGVPDYSSRASNQIRYESPSFAGFSFGVGYGLDEQASPIKRDVLSYNLRYRAGNLDVGVGRQEQKHESAPATDREYTAISGAYNFGVARVSAGFNRAENGANLRDNELSVGVNVPLGAFEVSVGYARSK 328          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: UPI0015DA826A (porin n=1 Tax=Tepidicella baoligensis TaxID=2707016 RepID=UPI0015DA826A)

HSP 1 Score: 186 bits (473), Expect = 1.920e-55
Identity = 88/172 (51.16%), Postives = 118/172 (68.60%), Query Frame = 1
Query:    7 VGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPLDIGFARQEDDFQVL-ANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            VGL+GGFG +K G+TD+ F DI DL V+ +++DSEFT TK  Y  G+G ++SR NNQ+RYE+P F GF+ G +++LDE+ A      A N+RY AG LD+G   QE   +   A+DREYT  SG YNFG  R+S  YQ  + G++ KDNE++LGV+VP+   D S GYA SK
Sbjct:   97 VGLTGGFGTLKLGRTDTTFDDIRDLAVSSSLWDSEFTPTKNVYGVGVGDYSSRANNQIRYESPSFSGFTFGASFSLDENAAQKRDINAFNIRYRAGALDVGLGYQEQKHESAPASDREYTALSGAYNFGVARVSAGYQRAKDGNSAKDNEYSLGVNVPVDKFDFSFGYANSK 268          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: UPI001421EA87 (porin n=1 Tax=Aquabacterium sp. A08 TaxID=2718532 RepID=UPI001421EA87)

HSP 1 Score: 174 bits (440), Expect = 2.610e-50
Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 1
Query:    7 VGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGGFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANA-------QTTAINLRYSAGPLDIGFARQEDDFQVLANDR-EYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            VGL+GGFG VK G+TD+ F DI DL V+ +++DSEFT TK  Y  G   ++SR +NQVRYE+P F GF+ GL+YA DE+ A NA       + TA+N RY  G LD+G A Q+ +  +  N   +YT  SG YNFG  RLS  YQ  +   N KDNE+++GV+VPL   ++S GYA SK
Sbjct:  106 VGLTGGFGTVKLGRTDTSFDDIRDLAVSSSLWDSEFTPTKNVYGTGRSDYSSRASNQVRYESPSFAGFTVGLSYAFDEE-AVNADPTKNGVKVTALNARYKVGALDLGVATQKQETYLNGNPEIKYTALSGAYNFGVTRLSAGYQQAKDATNTKDNEYSIGVNVPLDKFNISVGYASSK 283          
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Match: A0A372EL44_9BURK (Porin n=2 Tax=Hydrogenophaga TaxID=47420 RepID=A0A372EL44_9BURK)

HSP 1 Score: 170 bits (430), Expect = 7.050e-49
Identity = 86/182 (47.25%), Postives = 118/182 (64.84%), Query Frame = 1
Query:    1 SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLGG--------FTSRPNNQVRYETPKFGGFSAGLTYALDEDVA-ANAQTTAINLRYSAGPLDIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDNEFALGVSVPLGNVDLSAGYARSK 519
            S VGL+GGFGAVK G+T++ F DI D+ V   ++DSEF+ TK AY   +GG        ++SR +NQ+RYE+P FGGF+ G++Y LDE  +      TA NLRY +GPLD+G   QE + +V A  REYT  +G Y+FGAVR+S  Y + E G   + N F +G ++P+G  D S GYA +K
Sbjct:   99 SIVGLTGGFGAVKLGRTETAFDDIRDISVGSALWDSEFSPTKIAYANSVGGVAVGHVADYSSRSSNQIRYESPNFGGFTGGISYGLDEQASPVKRDVTAFNLRYRSGPLDVGLGYQEQNHEVSATKREYTTLAGAYDFGAVRVSAGYNMAEQG-TLESNGFVVGANMPMGPWDFSVGYAYNK 279          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56220.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A350SMZ8_9BURK4.630e-7766.28Porin_4 domain-containing protein n=3 Tax=Burkhold... [more]
UPI0010F45B855.360e-7163.22porin n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187... [more]
A0A2N2TP24_9PROT5.540e-6356.07Porin n=1 Tax=Betaproteobacteria bacterium HGW-Bet... [more]
A0A0T2YKL0_9BURK6.290e-6255.93Porin_4 domain-containing protein n=2 Tax=unclassi... [more]
A0A1Y2R2A6_9BURK4.840e-6153.01Porin_4 domain-containing protein n=1 Tax=Hydrogen... [more]
UPI0008266EEA8.210e-5955.49porin n=1 Tax=Hydrogenophaga palleronii TaxID=6565... [more]
A0A6P1J0A0_9BURK7.880e-5654.29Porin n=3 Tax=unclassified Hydrogenophaga TaxID=26... [more]
UPI0015DA826A1.920e-5551.16porin n=1 Tax=Tepidicella baoligensis TaxID=270701... [more]
UPI001421EA872.610e-5049.72porin n=1 Tax=Aquabacterium sp. A08 TaxID=2718532 ... [more]
A0A372EL44_9BURK7.050e-4947.25Porin n=2 Tax=Hydrogenophaga TaxID=47420 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56220contigP-wetherbeei_contig56220:1..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1504672.669784177
PFAMsPorin_4
Model size519
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.51e-26
EggNOG OGsCOG3203@1|root,COG3203@2|Bacteria,1MWUN@1224|Proteobacteria,2VN8D@28216|Betaproteobacteria,4AJ3T@80864|Comamonadaceae
DescriptionGram-negative porin
Cds size519
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.5609515-CDS-P-wetherbeei_contig56220:0..5191683186836.5609515-CDS-P-wetherbeei_contig56220:0..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56220 1..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56220.1.1prot_P-wetherbeei_contig56220.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56220 1..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56220.1.1

>prot_P-wetherbeei_contig56220.1.1 ID=prot_P-wetherbeei_contig56220.1.1|Name=mRNA_P-wetherbeei_contig56220.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
SWVGLSGGFGAVKFGKTDSVFKDIYDLGVTHNVFDSEFTATKEAYRAGLG
GFTSRPNNQVRYETPKFGGFSAGLTYALDEDVAANAQTTAINLRYSAGPL
DIGFARQEDDFQVLANDREYTVFSGTYNFGAVRLSGQYQITEAGDNRKDN
EFALGVSVPLGNVDLSAGYARSK
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mRNA from alignment at P-wetherbeei_contig56220:1..519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56220.1.1 ID=mRNA_P-wetherbeei_contig56220.1.1|Name=mRNA_P-wetherbeei_contig56220.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56220:1..519- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGGGTGGGCTTGAGCGGTGGCTTCGGTGCCGTCAAGTTCGGCAAGAC CGACAGCGTCTTCAAGGACATCTACGACCTCGGCGTGACCCACAACGTGT TCGACTCGGAGTTCACCGCCACCAAGGAAGCCTACCGCGCAGGCCTGGGC GGCTTCACCAGCCGGCCGAACAACCAAGTGCGTTACGAGACGCCCAAATT CGGTGGCTTCTCTGCTGGTTTGACCTACGCGCTGGACGAAGATGTGGCCG CCAATGCGCAGACCACCGCGATCAACCTGCGCTACAGCGCCGGCCCGCTG GACATCGGCTTCGCACGCCAGGAAGACGACTTCCAGGTGCTCGCCAACGA CCGCGAGTACACGGTGTTCTCGGGCACGTACAACTTCGGCGCCGTGCGCC TGTCGGGCCAGTACCAGATCACCGAGGCGGGCGACAACCGCAAGGACAAC GAGTTCGCGCTGGGCGTGAGCGTGCCGCTGGGCAACGTGGACCTGTCGGC TGGCTATGCCCGCAGCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56220:1..519-

>mRNA_P-wetherbeei_contig56220.1.1 ID=mRNA_P-wetherbeei_contig56220.1.1|Name=mRNA_P-wetherbeei_contig56220.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56220:1..519- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGGGTGGGCTTGAGCGGTGGCTTCGGTGCCGTCAAGTTCGGCAAGAC
CGACAGCGTCTTCAAGGACATCTACGACCTCGGCGTGACCCACAACGTGT
TCGACTCGGAGTTCACCGCCACCAAGGAAGCCTACCGCGCAGGCCTGGGC
GGCTTCACCAGCCGGCCGAACAACCAAGTGCGTTACGAGACGCCCAAATT
CGGTGGCTTCTCTGCTGGTTTGACCTACGCGCTGGACGAAGATGTGGCCG
CCAATGCGCAGACCACCGCGATCAACCTGCGCTACAGCGCCGGCCCGCTG
GACATCGGCTTCGCACGCCAGGAAGACGACTTCCAGGTGCTCGCCAACGA
CCGCGAGTACACGGTGTTCTCGGGCACGTACAACTTCGGCGCCGTGCGCC
TGTCGGGCCAGTACCAGATCACCGAGGCGGGCGACAACCGCAAGGACAAC
GAGTTCGCGCTGGGCGTGAGCGTGCCGCTGGGCAACGTGGACCTGTCGGC
TGGCTATGCCCGCAGCAAG
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