mRNA_P-wetherbeei_contig56168.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56168.1.1
Unique NamemRNA_P-wetherbeei_contig56168.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: UPI001C6A5FE4 (sugar phosphate isomerase/epimerase n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6A5FE4)

HSP 1 Score: 149 bits (377), Expect = 1.750e-41
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWL---EDDPTSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            A YWTIAG+V P  S   E S      R  AA  AGYRG+GL+H+DLV         TMR+IL DHDM HVE+E LV W    E    S  +L++LCEAAT LGAR LK   D       ++  I  F+A+CE A+ +G  + LEIMP++N+ +++ GL +VAGA    GGL+LD
Sbjct:   14 AAYWTIAGDVYP--SAPSEISPHSVVERVEAAAEAGYRGVGLIHADLVHQAGLIGLGTMRNILDDHDMPHVELELLVDWFASGEKKSASNRMLEELCEAATVLGARDLKIAGDYDKTDIDIEKAIESFAAICETAKHSGVKIGLEIMPFSNVATLERGLEIVAGADHEYGGLVLD 186          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: UPI001AC3FA22 (TIM barrel protein n=1 Tax=Actinoplanes toevensis TaxID=571911 RepID=UPI001AC3FA22)

HSP 1 Score: 147 bits (370), Expect = 1.640e-40
Identity = 74/172 (43.02%), Postives = 102/172 (59.30%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDDPTSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            AT WT AG+  PL  P  + S +  R R  AA  AG+RG+GL+H DL+     Y    +R++L DH +  +E+E + GW   +P S  V  DL EAA ALGARH+K  PD+    W  D     F+AL   A +AGT V LE +PW+N++++ EGL +V  AG   GGL++D
Sbjct:    8 ATCWTTAGDASPL--PGDQRSPVPIRERVEAAAAAGFRGLGLLHDDLMPALDGYGSGGLRALLDDHGIVDLELELITGWWNAEPDSDRVRRDLLEAAAALGARHIKVAPDVTDGPWEHDRWAAAFAALAADAAEAGTRVGLEFLPWSNIKTVHEGLGLVRAAGHPAGGLIID 177          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: UPI001942789C (TIM barrel protein n=2 Tax=Actinoplanes tereljensis TaxID=571912 RepID=UPI001942789C)

HSP 1 Score: 143 bits (360), Expect = 4.420e-39
Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDDPTSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            AT WT AG   PL  P  + S +  R R AAA  AG++GIGL+H+DL+     Y    +R++L DH +  +E+E + GW   +  S  V  DL  AA ALGARH+K GPD+    W  D  +  F+AL   A +AGT V LE +PW+N++++ +GLA+V  AG   GGL++D
Sbjct:    8 ATCWTTAGAASPL--PGDQRSPVPIRKRVAAASAAGFQGIGLLHADLMPALDQYGSGGLRALLDDHGIVDLELELITGWWSAE--SEPVRRDLLAAAEALGARHIKVGPDVSDGPWEHDRWVAAFAALAAEAAEAGTRVGLEFLPWSNIKTVHDGLALVRAAGHPAGGLIID 175          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: A0A1X9YH99_9SPHN (AP_endonuc_2 domain-containing protein n=1 Tax=Sphingomonas sp. KC8 TaxID=1030157 RepID=A0A1X9YH99_9SPHN)

HSP 1 Score: 143 bits (361), Expect = 4.430e-39
Identity = 77/175 (44.00%), Postives = 107/175 (61.14%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWL---EDDPTSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            AT WTI GNV+P +S       ++ R R AAA  AGY GIGL H DL++ R   D+A +R  +    ++H+E+E+L GW    E+   S AV  DL  AA ALGARH+K  P      WP   +I  F  LC++A + G  +ALE++P+++L +++  LAV AGA A NGGLL+D
Sbjct:    9 ATCWTIGGNVVPGTSQHISPFPLEDRVRAAAA--AGYTGIGLWHGDLLRWREGRDYAALRQAIERAGLKHIELEYLAGWFDGGEERRQSDAVRHDLFAAAEALGARHIKVMPPFGNAGWPTTRLIDEFGELCKQAARYGLLIALEMIPYSDLPTLESALAVAAGADADNGGLLVD 181          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: A0A521RAZ5_9GAMM (Sugar phosphate isomerase/epimerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521RAZ5_9GAMM)

HSP 1 Score: 142 bits (359), Expect = 7.240e-39
Identity = 72/175 (41.14%), Postives = 112/175 (64.00%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDDPTSTAVLDD---LCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            A+YWT++G  LP +  + E S  DF+ R  +A +AG++GIGL H+DL  + R+     M+ IL D+ ++H+E+EFL  W  +D    A   +   L +AA AL ARH+K G D  A+  P+DHMI  F+ LC+    AGT +  E+MP+ N++++ + +A+V GAGA+NGG++ D
Sbjct:    8 ASYWTLSGGALPHT--DHEYSTFDFKDRVVSAAKAGFKGIGLWHADLEYILRTRSLKEMKQILDDNGIEHLELEFLTDWFWEDDRRKASDKNRKMLLDAAEALNARHIKVG-DFSAQPCPMDHMIECFAKLCQEGADAGTRIIFEMMPFANIKTLADTVALVEGAGASNGGIIFD 179          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: UPI001FAE3CD4 (sugar phosphate isomerase/epimerase n=1 Tax=Variovorax sp. CYS-02 TaxID=2923278 RepID=UPI001FAE3CD4)

HSP 1 Score: 143 bits (360), Expect = 7.400e-39
Identity = 78/175 (44.57%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDDPTSTA---VLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            A+YWT+AG+VLP  SP Q  S   F +R  AA +AGY G+GLM+ DL    R    + MR  L DH ++H+E+EFL  W  D     A      +L  AA ALGARH+K G D     WPL  ++  F+ LCE A + GTA+ LE++PWT L +  + L ++  A A+N GLLLD
Sbjct:   12 ASYWTLAGDVLP-RSPSQ-ISPHSFESRVRAAAQAGYTGLGLMNDDLAATTRRMGLSAMRRCLDDHGLRHLELEFLGDWFADSERRAASDRTRAELLAAAQALGARHIKIGGDRYGAHWPLAQLVDSFARLCEEAARHGTAIVLELLPWTQLATPAQALPLLEQAQASNAGLLLD 184          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: A0A7G1PF06_9ACTN (Sugar phosphate isomerase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A7G1PF06_9ACTN)

HSP 1 Score: 142 bits (357), Expect = 1.410e-38
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDDP---TSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            AT WT AG+  P   P+   S +  R R  AA  AG++G GL+H DLV+  R+Y  + +RS+  D+ + H+E+E LV W  D P    S AV  DL   A ALGARHLK GPD++ + W  DH    F+ L  +A   G  +A+E +PW+NL+++ +GL +V  AG   GGL++D
Sbjct:    8 ATCWTTAGDAAP-GQPDLR-SPLTLRERVEAAGAAGFKGFGLLHEDLVEAERTYGLSGVRSLFEDNGLVHLELELLVDWWADGPRRAASDAVRLDLLRTAEALGARHLKIGPDVEDRPWEPDHWAEEFATLASQADGVGARLAIEFLPWSNLKTVHDGLRLVETAGHPAGGLIID 180          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: UPI000B5C2D6B (sugar phosphate isomerase/epimerase n=2 Tax=Streptomyces TaxID=1883 RepID=UPI000B5C2D6B)

HSP 1 Score: 141 bits (355), Expect = 2.800e-38
Identity = 73/175 (41.71%), Postives = 105/175 (60.00%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDD---PTSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            AT WT AG+  P    + + S ++ R R  AA  AG++GIGL+++DLV+  R Y    +RS+  D+ + HVE+E L  W  D      S AV  DL  AA ALGARHLK GPD++ + W LD     F+AL  +A   G  + +E +PW+NL+++ +GL +V  AG   GGL++D
Sbjct:    8 ATCWTTAGDTAP--DRDDQRSPLNLRARAEAAGAAGFKGIGLLYADLVEAEREYGLTGVRSLFEDNGLVHVELELLTDWWADGRRRSASDAVRRDLLRAAEALGARHLKIGPDVEDQPWDLDVWAKEFAALAAQADGVGARLGIEFLPWSNLKTVHDGLRLVEAAGHPAGGLIID 180          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: A0A2Z5MT52_BURPY (Sugar phosphate isomerase/epimerase n=1 Tax=Burkholderia pyrrocinia TaxID=60550 RepID=A0A2Z5MT52_BURPY)

HSP 1 Score: 140 bits (354), Expect = 4.050e-38
Identity = 77/175 (44.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLED-DPTSTAVLD--DLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            A+YWT++G V PL++ E   S   F  R   A RAG++G+G +H DLV VR    +A+M+ IL  + ++ +EVE L  W  D D  + + L+  DL EA  ALGAR LK   D Q K WP + ++  FS LC  A  AG  V +EIMPW+N  S++  + VV  AGA NGGL +D
Sbjct:    9 ASYWTVSGTVYPLATTE--VSPFTFEERVETAARAGFKGMGFVHQDLVAVRDRLGYASMKRILDANGIEDIEVEILTDWFADGDRKAQSDLERADLLEAGEALGARALKVSGDHQGKQWPHEVLVKTFSDLCADAGHAGMRVGIEIMPWSNFNSVNGTMEVVRDAGAKNGGLFVD 181          
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Match: UPI001B3C9703 (sugar phosphate isomerase/epimerase n=1 Tax=Streptomyces yatensis TaxID=155177 RepID=UPI001B3C9703)

HSP 1 Score: 140 bits (353), Expect = 5.570e-38
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 1
Query:    1 ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKVRRSYDFATMRSILADHDMQHVEVEFLVGWLEDDP---TSTAVLDDLCEAATALGARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLRSIDEGLAVVAGAGAANGGLLLD 516
            AT WT AG+  P     +  S++  R R  AA  AG+RG GL+H+DLV+  R Y  A +RS+  D+ + HVE+E L  W    P    S A+  DL  AA ALGARHLK GPD++ + W L+     F+ L  +A   G  + +E +PWTNL+++ +GL +V  AG   GGL++D
Sbjct:    8 ATCWTTAGDAAPGRGDGR--SSLTLRERAEAAGAAGFRGFGLLHADLVRAEREYGLAGIRSLFEDNGLVHVELELLTDWWARGPRRAASDAIRRDLLRAAEALGARHLKIGPDVEDRPWQLETWAEEFATLAAQADGVGARLGIEFLPWTNLKTLHDGLELVEAAGHPAGGLIID 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C6A5FE41.750e-4146.86sugar phosphate isomerase/epimerase n=1 Tax=Hoefle... [more]
UPI001AC3FA221.640e-4043.02TIM barrel protein n=1 Tax=Actinoplanes toevensis ... [more]
UPI001942789C4.420e-3943.02TIM barrel protein n=2 Tax=Actinoplanes tereljensi... [more]
A0A1X9YH99_9SPHN4.430e-3944.00AP_endonuc_2 domain-containing protein n=1 Tax=Sph... [more]
A0A521RAZ5_9GAMM7.240e-3941.14Sugar phosphate isomerase/epimerase n=1 Tax=Gammap... [more]
UPI001FAE3CD47.400e-3944.57sugar phosphate isomerase/epimerase n=1 Tax=Variov... [more]
A0A7G1PF06_9ACTN1.410e-3842.29Sugar phosphate isomerase n=4 Tax=Streptomyces Tax... [more]
UPI000B5C2D6B2.800e-3841.71sugar phosphate isomerase/epimerase n=2 Tax=Strept... [more]
A0A2Z5MT52_BURPY4.050e-3844.00Sugar phosphate isomerase/epimerase n=1 Tax=Burkho... [more]
UPI001B3C97035.570e-3841.71sugar phosphate isomerase/epimerase n=1 Tax=Strept... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56168contigP-wetherbeei_contig56168:2..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1030157.AFMP01000018_gene2773
PFAMsAP_endonuc_2
Model size516
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.2e-40
EggNOG OGsCOG1082@1|root,COG1082@2|Bacteria,1NS0A@1224|Proteobacteria,2V25B@28211|Alphaproteobacteria,2K3N9@204457|Sphingomonadales
DescriptionXylose isomerase-like TIM barrel
Cds size516
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.5773351-CDS-P-wetherbeei_contig56168:1..5171683186835.5773351-CDS-P-wetherbeei_contig56168:1..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56168 2..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56168.1.1prot_P-wetherbeei_contig56168.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56168 2..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56168.1.1

>prot_P-wetherbeei_contig56168.1.1 ID=prot_P-wetherbeei_contig56168.1.1|Name=mRNA_P-wetherbeei_contig56168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
ATYWTIAGNVLPLSSPEQEASAIDFRTRCAAAQRAGYRGIGLMHSDLVKV
RRSYDFATMRSILADHDMQHVEVEFLVGWLEDDPTSTAVLDDLCEAATAL
GARHLKAGPDMQAKSWPLDHMITRFSALCERARQAGTAVALEIMPWTNLR
SIDEGLAVVAGAGAANGGLLLD
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mRNA from alignment at P-wetherbeei_contig56168:2..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56168.1.1 ID=mRNA_P-wetherbeei_contig56168.1.1|Name=mRNA_P-wetherbeei_contig56168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56168:2..517+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACCTACTGGACGATTGCCGGCAATGTGCTGCCTTTGAGTTCGCCCGA GCAGGAGGCGAGCGCCATCGATTTCCGCACGCGCTGCGCCGCCGCGCAGC GGGCCGGCTACCGTGGTATCGGGCTGATGCACTCGGATTTAGTCAAAGTC CGTCGCAGCTACGACTTTGCCACCATGCGCAGCATTCTTGCCGACCACGA CATGCAGCATGTCGAAGTCGAATTTCTGGTTGGCTGGCTGGAGGATGACC CGACCTCTACCGCCGTACTTGATGATCTCTGCGAAGCTGCCACAGCGCTG GGCGCACGCCATCTCAAAGCCGGCCCGGACATGCAGGCCAAAAGCTGGCC ACTCGATCACATGATCACGCGCTTCAGTGCCCTATGTGAGCGCGCGCGCC AGGCCGGCACCGCTGTTGCACTGGAGATCATGCCGTGGACCAACCTGCGT AGCATCGACGAAGGCCTGGCAGTTGTGGCCGGCGCCGGCGCCGCTAACGG TGGCCTGTTGCTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56168:2..517+

>mRNA_P-wetherbeei_contig56168.1.1 ID=mRNA_P-wetherbeei_contig56168.1.1|Name=mRNA_P-wetherbeei_contig56168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56168:2..517+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACCTACTGGACGATTGCCGGCAATGTGCTGCCTTTGAGTTCGCCCGA
GCAGGAGGCGAGCGCCATCGATTTCCGCACGCGCTGCGCCGCCGCGCAGC
GGGCCGGCTACCGTGGTATCGGGCTGATGCACTCGGATTTAGTCAAAGTC
CGTCGCAGCTACGACTTTGCCACCATGCGCAGCATTCTTGCCGACCACGA
CATGCAGCATGTCGAAGTCGAATTTCTGGTTGGCTGGCTGGAGGATGACC
CGACCTCTACCGCCGTACTTGATGATCTCTGCGAAGCTGCCACAGCGCTG
GGCGCACGCCATCTCAAAGCCGGCCCGGACATGCAGGCCAAAAGCTGGCC
ACTCGATCACATGATCACGCGCTTCAGTGCCCTATGTGAGCGCGCGCGCC
AGGCCGGCACCGCTGTTGCACTGGAGATCATGCCGTGGACCAACCTGCGT
AGCATCGACGAAGGCCTGGCAGTTGTGGCCGGCGCCGGCGCCGCTAACGG
TGGCCTGTTGCTCGAC
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