mRNA_P-wetherbeei_contig56023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1H0FJ02_9BRAD (Uncharacterized protein n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0FJ02_9BRAD) HSP 1 Score: 247 bits (631), Expect = 9.570e-83 Identity = 119/130 (91.54%), Postives = 126/130 (96.92%), Query Frame = 1
Query: 16 MSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
MSSSV VGALVGWMLLLTVKHVIADF+LQNSWMAIGKDQKTGWALPLLAHCLVHLAVSM LILI+APRFWFVALIDFAIHIT+DR+KGI ASSFGVTQ+ EHPWFWTLIGVDQALHHLTGFGLSI+MA+N
Sbjct: 1 MSSSVPVGALVGWMLLLTVKHVIADFVLQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMMLILIVAPRFWFVALIDFAIHITVDRLKGICASSFGVTQEQEHPWFWTLIGVDQALHHLTGFGLSIFMASN 130
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1M5HZD0_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5HZD0_9BRAD) HSP 1 Score: 245 bits (626), Expect = 6.770e-82 Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 1
Query: 1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
+LFP MSSSV VGAL+GWMLLLTVKHVIADF+LQ SWMAIGKDQK GWALPLLAHCLVHLAV+M LILI+APRFWFVALIDFAIHIT+DR KG+ A++FGVTQ+N+HPWFWTLIGVDQALHHLTGFGLSI+MAAN
Sbjct: 1 MLFPPMSSSVPVGALIGWMLLLTVKHVIADFVLQTSWMAIGKDQKHGWALPLLAHCLVHLAVAMVLILIVAPRFWFVALIDFAIHITVDRAKGLCAANFGVTQENKHPWFWTLIGVDQALHHLTGFGLSIFMAAN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1B1UPA9_9BRAD (Uncharacterized protein n=27 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1B1UPA9_9BRAD) HSP 1 Score: 245 bits (625), Expect = 9.300e-82 Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 1
Query: 1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
+LFPSMSSS+ VGALVGWMLLLTVKHVIADF+LQ SWMAIGKDQKTGWALPLLAHCLVHLAVS+ LILI+APRFWFVA IDF IHI +DR+KGIIAS FGVT +NEHPWFWTLIGVDQALHHLTGFGL+I+MAAN
Sbjct: 1 MLFPSMSSSIPVGALVGWMLLLTVKHVIADFMLQTSWMAIGKDQKTGWALPLLAHCLVHLAVSLALILIVAPRFWFVAFIDFFIHIIVDRLKGIIASRFGVTLENEHPWFWTLIGVDQALHHLTGFGLAIFMAAN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1M6RIE6_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6RIE6_9BRAD) HSP 1 Score: 234 bits (598), Expect = 1.220e-77 Identity = 113/133 (84.96%), Postives = 122/133 (91.73%), Query Frame = 1
Query: 7 FPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
FP +SSSV VGAL+GWML+LTVKHVIADF+LQ SWMAIGKDQKTGWALPLLAHCLVHLAV+M LILIIAPRFWFVALIDFAIHIT+DR KG+ AS FGVT +NEHPWFWTLIGVDQALHHLT F L+I MAAN
Sbjct: 3 FPLLSSSVPVGALIGWMLVLTVKHVIADFVLQTSWMAIGKDQKTGWALPLLAHCLVHLAVAMVLILIIAPRFWFVALIDFAIHITVDRAKGLCASRFGVTLENEHPWFWTLIGVDQALHHLTDFFLAILMAAN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A0D7N9Q6_9BRAD (Uncharacterized protein n=56 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0D7N9Q6_9BRAD) HSP 1 Score: 231 bits (589), Expect = 2.870e-76 Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1
Query: 1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
+LFPSMSSSV VGALVGWMLLLT KH+IADF+LQ++WMAIGKDQKTGW +PLLAHCLVHLAV++ LIL++APRFW+VA +DF IHI IDR KGI AS FGVT ++ HPWFWTLIGVDQALHHLTGF LSIYMAAN
Sbjct: 1 MLFPSMSSSVLVGALVGWMLLLTAKHIIADFMLQSAWMAIGKDQKTGWGMPLLAHCLVHLAVALVLILVVAPRFWYVAFVDFVIHIIIDRCKGICASRFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: Q1QQF5_NITHX (Uncharacterized protein n=4 Tax=Nitrobacter TaxID=911 RepID=Q1QQF5_NITHX) HSP 1 Score: 231 bits (588), Expect = 4.210e-76 Identity = 107/135 (79.26%), Postives = 122/135 (90.37%), Query Frame = 1
Query: 1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
+L PS+SSS+AVG L GWM +LTVKHVIADF+LQNSWMAIGKDQKTGWALPLLAHCLVHLA+++ LIL+IAPRFWF+A IDFAIHI +DR KG AS+F VTQ+++HPWFWTLIGVDQALHHLTGFGLSI MA N
Sbjct: 1 MLLPSLSSSIAVGPLAGWMAVLTVKHVIADFVLQNSWMAIGKDQKTGWALPLLAHCLVHLALALALILVIAPRFWFIAFIDFAIHIVVDRAKGFCASTFNVTQEHQHPWFWTLIGVDQALHHLTGFGLSIVMAFN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A317HP76_9PROT (DUF3307 domain-containing protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317HP76_9PROT) HSP 1 Score: 229 bits (585), Expect = 1.130e-75 Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 1
Query: 7 FPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
FP++SSSV VGALVGWM++LTVKH+IADF+LQ +WMA GKDQKTGWALPLL HCL+HLAV+M LILIIAPRFWFVALIDFAIHIT+DR KG +S+FG+T EHPWFWTLIGVDQALHHLTGFGLSIYMAAN
Sbjct: 3 FPALSSSVPVGALVGWMIVLTVKHIIADFVLQTAWMAHGKDQKTGWALPLLVHCLIHLAVAMVLILIIAPRFWFVALIDFAIHITVDRAKGFTSSTFGMTP--EHPWFWTLIGVDQALHHLTGFGLSIYMAAN 133
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1M7U2W3_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M7U2W3_9BRAD) HSP 1 Score: 229 bits (585), Expect = 1.170e-75 Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 1
Query: 7 FPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
FP MS+SV VGAL+GWM+LLTVKHVIADF+LQ SWMAIGKDQ+ GWALPLLAHC VH AV++ ILI+APRFWFVA+IDF IHIT+DR KG+++S GVTQ+N+HPWFWTLIGVDQALHHLTGFGLSI+MAAN
Sbjct: 3 FPPMSASVPVGALIGWMVLLTVKHVIADFVLQTSWMAIGKDQREGWALPLLAHCGVHFAVALAFILIVAPRFWFVAVIDFVIHITVDRCKGLVSSRLGVTQENQHPWFWTLIGVDQALHHLTGFGLSIFMAAN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: Q3SV62_NITWN (Uncharacterized protein n=3 Tax=Nitrobacter winogradskyi TaxID=913 RepID=Q3SV62_NITWN) HSP 1 Score: 227 bits (579), Expect = 9.920e-75 Identity = 102/135 (75.56%), Postives = 123/135 (91.11%), Query Frame = 1
Query: 1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
+L PS+SSS+AVG LVGWM++LTVKHV+ADF+LQNSWMA+GKDQ+TGWALPLL+HCLVHLA+++ LIL+IAPRFWF+A IDFAIH+ +DR KGI S+F VTQD++HPWFWTLIGVDQ LHHLTGFGL+I MA N
Sbjct: 1 MLLPSLSSSIAVGPLVGWMVVLTVKHVLADFVLQNSWMAVGKDQRTGWALPLLSHCLVHLALALALILVIAPRFWFIAFIDFAIHLVVDRAKGICVSAFDVTQDHQHPWFWTLIGVDQTLHHLTGFGLAIVMAFN 135
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1H1ZZG1_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A1H1ZZG1_9BRAD) HSP 1 Score: 225 bits (574), Expect = 4.400e-74 Identity = 112/130 (86.15%), Postives = 118/130 (90.77%), Query Frame = 1
Query: 16 MSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
MSSSV VGALVGWML+LT KHVIADF+LQ SWMA+GKDQKTGWALPLLAHCLVHLAV+M LIL IAPRFWFVALIDFAIHITIDR KG AS+F VT EHPWFWTLIGVDQALHHLTGFGLSI+MAAN
Sbjct: 1 MSSSVPVGALVGWMLVLTFKHVIADFVLQTSWMALGKDQKTGWALPLLAHCLVHLAVAMALILAIAPRFWFVALIDFAIHITIDRAKGFCASTFDVTL--EHPWFWTLIGVDQALHHLTGFGLSIFMAAN 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56023.1.1 >prot_P-wetherbeei_contig56023.1.1 ID=prot_P-wetherbeei_contig56023.1.1|Name=mRNA_P-wetherbeei_contig56023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp MSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHback to top mRNA from alignment at P-wetherbeei_contig56023:83..490- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56023.1.1 ID=mRNA_P-wetherbeei_contig56023.1.1|Name=mRNA_P-wetherbeei_contig56023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig56023:83..490- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56023:83..490- >mRNA_P-wetherbeei_contig56023.1.1 ID=mRNA_P-wetherbeei_contig56023.1.1|Name=mRNA_P-wetherbeei_contig56023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig56023:83..490- (Phaeothamnion wetherbeei SAG_119_79)back to top |