mRNA_P-wetherbeei_contig56023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56023.1.1
Unique NamemRNA_P-wetherbeei_contig56023.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1H0FJ02_9BRAD (Uncharacterized protein n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0FJ02_9BRAD)

HSP 1 Score: 247 bits (631), Expect = 9.570e-83
Identity = 119/130 (91.54%), Postives = 126/130 (96.92%), Query Frame = 1
Query:   16 MSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            MSSSV VGALVGWMLLLTVKHVIADF+LQNSWMAIGKDQKTGWALPLLAHCLVHLAVSM LILI+APRFWFVALIDFAIHIT+DR+KGI ASSFGVTQ+ EHPWFWTLIGVDQALHHLTGFGLSI+MA+N
Sbjct:    1 MSSSVPVGALVGWMLLLTVKHVIADFVLQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMMLILIVAPRFWFVALIDFAIHITVDRLKGICASSFGVTQEQEHPWFWTLIGVDQALHHLTGFGLSIFMASN 130          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1M5HZD0_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5HZD0_9BRAD)

HSP 1 Score: 245 bits (626), Expect = 6.770e-82
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 1
Query:    1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            +LFP MSSSV VGAL+GWMLLLTVKHVIADF+LQ SWMAIGKDQK GWALPLLAHCLVHLAV+M LILI+APRFWFVALIDFAIHIT+DR KG+ A++FGVTQ+N+HPWFWTLIGVDQALHHLTGFGLSI+MAAN
Sbjct:    1 MLFPPMSSSVPVGALIGWMLLLTVKHVIADFVLQTSWMAIGKDQKHGWALPLLAHCLVHLAVAMVLILIVAPRFWFVALIDFAIHITVDRAKGLCAANFGVTQENKHPWFWTLIGVDQALHHLTGFGLSIFMAAN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1B1UPA9_9BRAD (Uncharacterized protein n=27 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1B1UPA9_9BRAD)

HSP 1 Score: 245 bits (625), Expect = 9.300e-82
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 1
Query:    1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            +LFPSMSSS+ VGALVGWMLLLTVKHVIADF+LQ SWMAIGKDQKTGWALPLLAHCLVHLAVS+ LILI+APRFWFVA IDF IHI +DR+KGIIAS FGVT +NEHPWFWTLIGVDQALHHLTGFGL+I+MAAN
Sbjct:    1 MLFPSMSSSIPVGALVGWMLLLTVKHVIADFMLQTSWMAIGKDQKTGWALPLLAHCLVHLAVSLALILIVAPRFWFVAFIDFFIHIIVDRLKGIIASRFGVTLENEHPWFWTLIGVDQALHHLTGFGLAIFMAAN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1M6RIE6_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6RIE6_9BRAD)

HSP 1 Score: 234 bits (598), Expect = 1.220e-77
Identity = 113/133 (84.96%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    7 FPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            FP +SSSV VGAL+GWML+LTVKHVIADF+LQ SWMAIGKDQKTGWALPLLAHCLVHLAV+M LILIIAPRFWFVALIDFAIHIT+DR KG+ AS FGVT +NEHPWFWTLIGVDQALHHLT F L+I MAAN
Sbjct:    3 FPLLSSSVPVGALIGWMLVLTVKHVIADFVLQTSWMAIGKDQKTGWALPLLAHCLVHLAVAMVLILIIAPRFWFVALIDFAIHITVDRAKGLCASRFGVTLENEHPWFWTLIGVDQALHHLTDFFLAILMAAN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A0D7N9Q6_9BRAD (Uncharacterized protein n=56 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0D7N9Q6_9BRAD)

HSP 1 Score: 231 bits (589), Expect = 2.870e-76
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1
Query:    1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            +LFPSMSSSV VGALVGWMLLLT KH+IADF+LQ++WMAIGKDQKTGW +PLLAHCLVHLAV++ LIL++APRFW+VA +DF IHI IDR KGI AS FGVT ++ HPWFWTLIGVDQALHHLTGF LSIYMAAN
Sbjct:    1 MLFPSMSSSVLVGALVGWMLLLTAKHIIADFMLQSAWMAIGKDQKTGWGMPLLAHCLVHLAVALVLILVVAPRFWYVAFVDFVIHIIIDRCKGICASRFGVTLESGHPWFWTLIGVDQALHHLTGFALSIYMAAN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: Q1QQF5_NITHX (Uncharacterized protein n=4 Tax=Nitrobacter TaxID=911 RepID=Q1QQF5_NITHX)

HSP 1 Score: 231 bits (588), Expect = 4.210e-76
Identity = 107/135 (79.26%), Postives = 122/135 (90.37%), Query Frame = 1
Query:    1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            +L PS+SSS+AVG L GWM +LTVKHVIADF+LQNSWMAIGKDQKTGWALPLLAHCLVHLA+++ LIL+IAPRFWF+A IDFAIHI +DR KG  AS+F VTQ+++HPWFWTLIGVDQALHHLTGFGLSI MA N
Sbjct:    1 MLLPSLSSSIAVGPLAGWMAVLTVKHVIADFVLQNSWMAIGKDQKTGWALPLLAHCLVHLALALALILVIAPRFWFIAFIDFAIHIVVDRAKGFCASTFNVTQEHQHPWFWTLIGVDQALHHLTGFGLSIVMAFN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A317HP76_9PROT (DUF3307 domain-containing protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317HP76_9PROT)

HSP 1 Score: 229 bits (585), Expect = 1.130e-75
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    7 FPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            FP++SSSV VGALVGWM++LTVKH+IADF+LQ +WMA GKDQKTGWALPLL HCL+HLAV+M LILIIAPRFWFVALIDFAIHIT+DR KG  +S+FG+T   EHPWFWTLIGVDQALHHLTGFGLSIYMAAN
Sbjct:    3 FPALSSSVPVGALVGWMIVLTVKHIIADFVLQTAWMAHGKDQKTGWALPLLVHCLIHLAVAMVLILIIAPRFWFVALIDFAIHITVDRAKGFTSSTFGMTP--EHPWFWTLIGVDQALHHLTGFGLSIYMAAN 133          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1M7U2W3_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M7U2W3_9BRAD)

HSP 1 Score: 229 bits (585), Expect = 1.170e-75
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 1
Query:    7 FPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            FP MS+SV VGAL+GWM+LLTVKHVIADF+LQ SWMAIGKDQ+ GWALPLLAHC VH AV++  ILI+APRFWFVA+IDF IHIT+DR KG+++S  GVTQ+N+HPWFWTLIGVDQALHHLTGFGLSI+MAAN
Sbjct:    3 FPPMSASVPVGALIGWMVLLTVKHVIADFVLQTSWMAIGKDQREGWALPLLAHCGVHFAVALAFILIVAPRFWFVAVIDFVIHITVDRCKGLVSSRLGVTQENQHPWFWTLIGVDQALHHLTGFGLSIFMAAN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: Q3SV62_NITWN (Uncharacterized protein n=3 Tax=Nitrobacter winogradskyi TaxID=913 RepID=Q3SV62_NITWN)

HSP 1 Score: 227 bits (579), Expect = 9.920e-75
Identity = 102/135 (75.56%), Postives = 123/135 (91.11%), Query Frame = 1
Query:    1 LLFPSMSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            +L PS+SSS+AVG LVGWM++LTVKHV+ADF+LQNSWMA+GKDQ+TGWALPLL+HCLVHLA+++ LIL+IAPRFWF+A IDFAIH+ +DR KGI  S+F VTQD++HPWFWTLIGVDQ LHHLTGFGL+I MA N
Sbjct:    1 MLLPSLSSSIAVGPLVGWMVVLTVKHVLADFVLQNSWMAVGKDQRTGWALPLLSHCLVHLALALALILVIAPRFWFIAFIDFAIHLVVDRAKGICVSAFDVTQDHQHPWFWTLIGVDQTLHHLTGFGLAIVMAFN 135          
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Match: A0A1H1ZZG1_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A1H1ZZG1_9BRAD)

HSP 1 Score: 225 bits (574), Expect = 4.400e-74
Identity = 112/130 (86.15%), Postives = 118/130 (90.77%), Query Frame = 1
Query:   16 MSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAHCLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDNEHPWFWTLIGVDQALHHLTGFGLSIYMAAN 405
            MSSSV VGALVGWML+LT KHVIADF+LQ SWMA+GKDQKTGWALPLLAHCLVHLAV+M LIL IAPRFWFVALIDFAIHITIDR KG  AS+F VT   EHPWFWTLIGVDQALHHLTGFGLSI+MAAN
Sbjct:    1 MSSSVPVGALVGWMLVLTFKHVIADFVLQTSWMALGKDQKTGWALPLLAHCLVHLAVAMALILAIAPRFWFVALIDFAIHITIDRAKGFCASTFDVTL--EHPWFWTLIGVDQALHHLTGFGLSIFMAAN 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H0FJ02_9BRAD9.570e-8391.54Uncharacterized protein n=5 Tax=Bradyrhizobiaceae ... [more]
A0A1M5HZD0_9BRAD6.770e-8285.93Uncharacterized protein n=3 Tax=Bradyrhizobium Tax... [more]
A0A1B1UPA9_9BRAD9.300e-8286.67Uncharacterized protein n=27 Tax=Bradyrhizobiaceae... [more]
A0A1M6RIE6_9BRAD1.220e-7784.96Uncharacterized protein n=2 Tax=Bradyrhizobium lab... [more]
A0A0D7N9Q6_9BRAD2.870e-7680.00Uncharacterized protein n=56 Tax=Bradyrhizobiaceae... [more]
Q1QQF5_NITHX4.210e-7679.26Uncharacterized protein n=4 Tax=Nitrobacter TaxID=... [more]
A0A317HP76_9PROT1.130e-7581.95DUF3307 domain-containing protein n=2 Tax=Proteoba... [more]
A0A1M7U2W3_9BRAD1.170e-7578.95Uncharacterized protein n=2 Tax=Bradyrhizobium ery... [more]
Q3SV62_NITWN9.920e-7575.56Uncharacterized protein n=3 Tax=Nitrobacter winogr... [more]
A0A1H1ZZG1_9BRAD4.400e-7486.15Uncharacterized protein n=3 Tax=Bradyrhizobium Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56023contigP-wetherbeei_contig56023:83..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1298867.AUES01000010_gene5831
Preferred nameMA20_18760
PFAMsDUF3307
Model size408
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.09e-82
EggNOG OGs2EESX@1|root,338KG@2|Bacteria,1RD32@1224|Proteobacteria,2U7BH@28211|Alphaproteobacteria,3JZ24@41294|Bradyrhizobiaceae
DescriptionProtein of unknown function (DUF3307)
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.9326782-CDS-P-wetherbeei_contig56023:82..4751683186833.9326782-CDS-P-wetherbeei_contig56023:82..475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56023 83..475 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.9415686-UTR-P-wetherbeei_contig56023:475..4901683186833.9415686-UTR-P-wetherbeei_contig56023:475..490Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56023 476..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56023.1.1prot_P-wetherbeei_contig56023.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56023 83..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56023.1.1

>prot_P-wetherbeei_contig56023.1.1 ID=prot_P-wetherbeei_contig56023.1.1|Name=mRNA_P-wetherbeei_contig56023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MSSSVAVGALVGWMLLLTVKHVIADFILQNSWMAIGKDQKTGWALPLLAH
CLVHLAVSMTLILIIAPRFWFVALIDFAIHITIDRIKGIIASSFGVTQDN
EHPWFWTLIGVDQALHHLTGFGLSIYMAAN*
back to top

mRNA from alignment at P-wetherbeei_contig56023:83..490-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56023.1.1 ID=mRNA_P-wetherbeei_contig56023.1.1|Name=mRNA_P-wetherbeei_contig56023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig56023:83..490- (Phaeothamnion wetherbeei SAG_119_79)
TTGTTGTTTCCCTCCATGTCGTCGTCGGTCGCGGTTGGTGCGCTGGTGGG ATGGATGCTGCTTCTCACCGTGAAGCACGTCATCGCCGATTTCATTCTGC AAAATTCCTGGATGGCGATCGGCAAGGACCAGAAGACCGGCTGGGCGCTG CCGCTGCTGGCGCATTGCCTGGTGCATCTGGCGGTGTCGATGACGCTGAT TCTGATCATCGCGCCACGTTTCTGGTTCGTCGCCTTGATCGATTTTGCCA TTCACATCACGATCGACCGCATCAAGGGAATCATTGCGTCCTCGTTCGGG GTGACGCAGGATAACGAGCACCCCTGGTTCTGGACGCTGATCGGCGTCGA CCAGGCGCTGCACCATCTCACCGGTTTCGGCCTGTCGATCTATATGGCAG CCAACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56023:83..490-

>mRNA_P-wetherbeei_contig56023.1.1 ID=mRNA_P-wetherbeei_contig56023.1.1|Name=mRNA_P-wetherbeei_contig56023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig56023:83..490- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCGTCGGTCGCGGTTGGTGCGCTGGTGGGATGGATGCTGCTTCT
CACCGTGAAGCACGTCATCGCCGATTTCATTCTGCAAAATTCCTGGATGG
CGATCGGCAAGGACCAGAAGACCGGCTGGGCGCTGCCGCTGCTGGCGCAT
TGCCTGGTGCATCTGGCGGTGTCGATGACGCTGATTCTGATCATCGCGCC
ACGTTTCTGGTTCGTCGCCTTGATCGATTTTGCCATTCACATCACGATCG
ACCGCATCAAGGGAATCATTGCGTCCTCGTTCGGGGTGACGCAGGATAAC
GAGCACCCCTGGTTCTGGACGCTGATCGGCGTCGACCAGGCGCTGCACCA
TCTCACCGGTTTCGGCCTGTCGATCTATATGGCAGCCAACTGA
back to top