mRNA_P-wetherbeei_contig55521.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55521.1.1
Unique NamemRNA_P-wetherbeei_contig55521.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: UPI001A8EEB44 (hypothetical protein n=1 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001A8EEB44)

HSP 1 Score: 100 bits (249), Expect = 2.640e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG 147
            PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG
Sbjct:  152 PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG 200          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: A0A6L6ADF3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6L6ADF3_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 8.410e-21
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG 147
            PRWVQVGVG VGIAAD   PELAA+YADDAHRDGTVRDALAKGPKV RG
Sbjct:  152 PRWVQVGVGVVGIAADQDQPELAALYADDAHRDGTVRDALAKGPKVFRG 200          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: UPI001E55BF04 (hypothetical protein n=1 Tax=Nocardioides furvisabuli TaxID=375542 RepID=UPI001E55BF04)

HSP 1 Score: 89.0 bits (219), Expect = 8.410e-21
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG 147
            PRWV+VGVGAVG+AA   SP+LAA+YADDAHRDGTVRDALAK PKVRRG
Sbjct:  152 PRWVRVGVGAVGVAAQAESPDLAAVYADDAHRDGTVRDALAKSPKVRRG 200          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: A0A4Q2T3S1_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides zhouii TaxID=1168729 RepID=A0A4Q2T3S1_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 1.150e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG 147
            PRWVQVGVGAVG + D ASP+   +YADDAHR G +RD +A GP+VRRG
Sbjct:  150 PRWVQVGVGAVGGSEDPASPDGFTVYADDAHRVGEIRDNIALGPRVRRG 198          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: UPI001745E13F (hypothetical protein n=1 Tax=Nocardioides cavernae TaxID=1921566 RepID=UPI001745E13F)

HSP 1 Score: 63.5 bits (153), Expect = 5.180e-11
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG 147
            PRWVQVGVGAV +AA    P+  A +ADDA R G +RD +A GPKVRRG
Sbjct:  150 PRWVQVGVGAVAVAALEGQPDEGAAHADDAIRVGEIRDRIALGPKVRRG 198          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: UPI00131F3CB9 (hypothetical protein n=1 Tax=Nocardioides terrigena TaxID=424797 RepID=UPI00131F3CB9)

HSP 1 Score: 57.0 bits (136), Expect = 1.740e-8
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASP--ELAAIYADDAHRDGTVRDAL-AKGPKVRRG 147
            PRWVQVG G   +    A+   E   ++ADDAHR GTVRD + AKGPKVRRG
Sbjct:  155 PRWVQVGAGVASLETVAAADGTEQIVVFADDAHRAGTVRDEIVAKGPKVRRG 206          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: A0A0Q9TM18_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. Soil805 TaxID=1736416 RepID=A0A0Q9TM18_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 6.540e-8
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 PRWVQVGVGAVGI----AADVASPELAAIYADDAHRDGTVRDA-LAKGPKVRRG 147
            PRWVQVGVG   +    AAD A  E   ++ADDAHR GT+ D  L KGPKVRRG
Sbjct:  154 PRWVQVGVGVASLETVTAADGA--EQVVVFADDAHRAGTISDENLTKGPKVRRG 205          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: UPI000D30B61F (hypothetical protein n=1 Tax=Nocardioides sediminis TaxID=433648 RepID=UPI000D30B61F)

HSP 1 Score: 54.7 bits (130), Expect = 1.290e-7
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    1 PRWVQVGVGAVGIAADVASP--ELAAIYADDAHRDGTVRDA-LAKGPKVRRG 147
            PRWVQVG G   +    A+   E   ++ADDAHR GT+ D  LAKGPKVRRG
Sbjct:  155 PRWVQVGAGIASLETVAAADGTEQVVVFADDAHRAGTIGDENLAKGPKVRRG 206          
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Match: A0A0Q9R9K1_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. Soil777 TaxID=1736409 RepID=A0A0Q9R9K1_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 4.850e-7
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 PRWVQVGVGAVGI----AADVASPELAAIYADDAHRDGTVRDA-LAKGPKVRRG 147
            PRWVQVG G   +    AAD A  ++  ++ADDAHR GT+ D  L KGPKVRRG
Sbjct:  155 PRWVQVGAGIASLETVTAADGAEQDV--VFADDAHRAGTIGDDNLTKGPKVRRG 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55521.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001A8EEB442.640e-25100.00hypothetical protein n=1 Tax=Nocardioides sp. S5 T... [more]
A0A6L6ADF3_9ACTN8.410e-2187.76Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI001E55BF048.410e-2183.67hypothetical protein n=1 Tax=Nocardioides furvisab... [more]
A0A4Q2T3S1_9ACTN1.150e-1367.35Uncharacterized protein n=1 Tax=Nocardioides zhoui... [more]
UPI001745E13F5.180e-1163.27hypothetical protein n=1 Tax=Nocardioides cavernae... [more]
UPI00131F3CB91.740e-857.69hypothetical protein n=1 Tax=Nocardioides terrigen... [more]
A0A0Q9TM18_9ACTN6.540e-859.26Uncharacterized protein n=1 Tax=Nocardioides sp. S... [more]
UPI000D30B61F1.290e-755.77hypothetical protein n=1 Tax=Nocardioides sedimini... [more]
A0A0Q9R9K1_9ACTN4.850e-755.56Uncharacterized protein n=1 Tax=Nocardioides sp. S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55521contigP-wetherbeei_contig55521:3..152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.8192244-CDS-P-wetherbeei_contig55521:2..1521683186826.8192244-CDS-P-wetherbeei_contig55521:2..152Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55521 3..152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55521.1.1prot_P-wetherbeei_contig55521.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55521 3..152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55521.1.1

>prot_P-wetherbeei_contig55521.1.1 ID=prot_P-wetherbeei_contig55521.1.1|Name=mRNA_P-wetherbeei_contig55521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
PRWVQVGVGAVGIAADVASPELAAIYADDAHRDGTVRDALAKGPKVRRG*
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mRNA from alignment at P-wetherbeei_contig55521:3..152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55521.1.1 ID=mRNA_P-wetherbeei_contig55521.1.1|Name=mRNA_P-wetherbeei_contig55521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig55521:3..152+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCGCTGGGTGCAGGTCGGCGTGGGCGCCGTCGGCATCGCCGCCGACGT GGCGTCGCCCGAGCTCGCGGCCATCTACGCCGACGACGCACACCGCGACG GGACCGTCCGCGACGCCCTCGCCAAGGGCCCAAAGGTCCGTCGCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55521:3..152+

>mRNA_P-wetherbeei_contig55521.1.1 ID=mRNA_P-wetherbeei_contig55521.1.1|Name=mRNA_P-wetherbeei_contig55521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig55521:3..152+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCGCTGGGTGCAGGTCGGCGTGGGCGCCGTCGGCATCGCCGCCGACGT
GGCGTCGCCCGAGCTCGCGGCCATCTACGCCGACGACGCACACCGCGACG
GGACCGTCCGCGACGCCCTCGCCAAGGGCCCAAAGGTCCGTCGCGGCTGA
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