mRNA_P-wetherbeei_contig55178.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A327KRD8_9HYPH (HTH marR-type domain-containing protein n=2 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KRD8_9HYPH) HSP 1 Score: 126 bits (317), Expect = 3.800e-34 Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 28 KTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
KT FA P TVSH A+L G D AFRETLYLMVL GRL+ CREAFGRAL LTGSQFAVLIG AY+Q GV+IRALADH+ LA THVTTE
Sbjct: 58 KTSPAGCFAVPLTVSHPAMLSAGQDGAFRETLYLMVLALGRLLTCREAFGRALDLTGSQFAVLIGTAYQQNGAGVTIRALADHVMLAPTHVTTE 151
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A6N7GPP7_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GPP7_9HYPH) HSP 1 Score: 123 bits (309), Expect = 2.470e-33 Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 10 RAKLPAKTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
R + A+ +R F PP TVSH ALL G D AFR+T+Y MV FGRL CREAFGRALGLTGSQFAVL+ AAY++ +GVSIRALADH LA THVTTE
Sbjct: 17 RQNVKARQEKRQGFQPPLTVSHEALLTRGRDDAFRQTIYAMVQAFGRLQNCREAFGRALGLTGSQFAVLMSAAYQRHSDGVSIRALADHAHLAPTHVTTE 116
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A127F4Y6_9HYPH (MarR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F4Y6_9HYPH) HSP 1 Score: 121 bits (304), Expect = 1.160e-32 Identity = 67/101 (66.34%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 7 ARAKLPAKTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
AR P K + AF PATV+ A+L G+D AFRET+YLM L F RL +CREAFGRAL LT SQF VLIG A+RQG GV+IRALADH QLAATHVTTE
Sbjct: 12 ARNVRPNKPGKAKAFTSPATVTLPAVLVGGNDTAFRETIYLMALAFDRLHSCREAFGRALSLTASQFIVLIGTAHRQGQEGVTIRALADHTQLAATHVTTE 112
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001331A288 (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Roseomonas harenae TaxID=2692566 RepID=UPI001331A288) HSP 1 Score: 119 bits (298), Expect = 1.280e-31 Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 1
Query: 64 TVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
T+S LL+DGSD+AFRET++ MVL GRL +CR+AFGRA+GLTGSQFAVL+G + QG+ GVSIRALADH+Q+AATHVTTE
Sbjct: 29 TISLPELLQDGSDLAFRETVFSMVLALGRLQSCRDAFGRAMGLTGSQFAVLVGVGHCQGEQGVSIRALADHVQMAATHVTTE 110
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001356A2DE (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Rhodovarius lipocyclicus TaxID=268410 RepID=UPI001356A2DE) HSP 1 Score: 117 bits (294), Expect = 1.910e-31 Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1
Query: 46 AFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
A+ PP TVSH ALL +G D+ FR+TLYL+VL G+L+ CREAFG+ GLTGSQFAVL G AY QG+ GV+IRALA H+ +A THVTTE
Sbjct: 7 AYVPPLTVSHPALLLEGRDMRFRDTLYLLVLVLGQLLDCREAFGKRAGLTGSQFAVLFGVAYSQGEAGVTIRALAHHVHMADTHVTTE 94
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A437MNU4_9PROT (MarR family transcriptional regulator n=2 Tax=Rhodovarius crocodyli TaxID=1979269 RepID=A0A437MNU4_9PROT) HSP 1 Score: 117 bits (294), Expect = 6.450e-31 Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 28 KTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGD----NGVSIRALADHIQLAATHVTTE 309
K + A + PP TVSH ALL G DVAFRETLYLMVL G+L+ CREAFGR G+TGSQFAVL G AY QG +GV+IRAL+ H+Q+A THVTTE
Sbjct: 43 KALPAAHYVPPLTVSHPALLAGGRDVAFRETLYLMVLTLGQLLDCREAFGRRAGMTGSQFAVLFGVAYSQGAAKGASGVTIRALSHHVQMADTHVTTE 140
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001485581C (winged helix DNA-binding protein n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI001485581C) HSP 1 Score: 116 bits (291), Expect = 8.620e-31 Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 46 AFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
A+ PP T S + L+ G D AFRET+YL+V RL+ACREAFGRA+GLT SQFAVLIG AYRQG GV+IR LA+H+ LA+THVTTE
Sbjct: 16 AYRPPLTTSRSDFLKTGRDDAFRETIYLLVRSLDRLLACREAFGRAIGLTASQFAVLIGTAYRQGARGVTIRDLAEHVSLASTHVTTE 103
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001186ADAD (MarR family transcriptional regulator n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI001186ADAD) HSP 1 Score: 116 bits (290), Expect = 1.720e-30 Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 49 FAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
F PP TVSH LL +GSD FR +YL+V GRL ACREAFGR++GLTGSQFAVLIG AYRQG+ G+SI+ALA ++ LA THVTTE
Sbjct: 27 FVPPKTVSHDDLLVNGSDDTFRHVIYLIVEVLGRLTACREAFGRSVGLTGSQFAVLIGVAYRQGNAGISIKALAQYVHLAPTHVTTE 113
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A7I0K3M7_9HYPH (MarR family transcriptional regulator n=4 Tax=Bacteria TaxID=2 RepID=A0A7I0K3M7_9HYPH) HSP 1 Score: 114 bits (286), Expect = 7.050e-30 Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 49 FAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
F P ATVSH LLRDGSD FR+T++LM L GRL+ CR+AFGR LTGSQFAVL+G AY +G +GV+IR L++H+ LA THVTTE
Sbjct: 25 FVPAATVSHPDLLRDGSDYEFRDTIHLMTLAIGRLLICRDAFGRRANLTGSQFAVLLGTAYCEGCDGVTIRKLSEHVHLAQTHVTTE 111
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI00165CF42B (MarR family transcriptional regulator n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165CF42B) HSP 1 Score: 113 bits (283), Expect = 2.000e-29 Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 49 FAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
F PP TVSHA LL +GSD FR+ +YL V GR+ CREAFGR++GLTGSQFAVL+G AYRQG+ GV+I+ LA +I LA THVTTE
Sbjct: 30 FTPPLTVSHADLLVNGSDDRFRQMIYLFVEVLGRMNMCREAFGRSIGLTGSQFAVLVGVAYRQGEQGVTIKKLAQYIHLAPTHVTTE 116 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55178.1.1 >prot_P-wetherbeei_contig55178.1.1 ID=prot_P-wetherbeei_contig55178.1.1|Name=mRNA_P-wetherbeei_contig55178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp MTARAKLPAKTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRback to top mRNA from alignment at P-wetherbeei_contig55178:3..311- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55178.1.1 ID=mRNA_P-wetherbeei_contig55178.1.1|Name=mRNA_P-wetherbeei_contig55178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig55178:3..311- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55178:3..311- >mRNA_P-wetherbeei_contig55178.1.1 ID=mRNA_P-wetherbeei_contig55178.1.1|Name=mRNA_P-wetherbeei_contig55178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig55178:3..311- (Phaeothamnion wetherbeei SAG_119_79)back to top |