mRNA_P-wetherbeei_contig55178.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55178.1.1
Unique NamemRNA_P-wetherbeei_contig55178.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A327KRD8_9HYPH (HTH marR-type domain-containing protein n=2 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KRD8_9HYPH)

HSP 1 Score: 126 bits (317), Expect = 3.800e-34
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   28 KTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            KT     FA P TVSH A+L  G D AFRETLYLMVL  GRL+ CREAFGRAL LTGSQFAVLIG AY+Q   GV+IRALADH+ LA THVTTE
Sbjct:   58 KTSPAGCFAVPLTVSHPAMLSAGQDGAFRETLYLMVLALGRLLTCREAFGRALDLTGSQFAVLIGTAYQQNGAGVTIRALADHVMLAPTHVTTE 151          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A6N7GPP7_9HYPH (MarR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GPP7_9HYPH)

HSP 1 Score: 123 bits (309), Expect = 2.470e-33
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   10 RAKLPAKTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            R  + A+  +R  F PP TVSH ALL  G D AFR+T+Y MV  FGRL  CREAFGRALGLTGSQFAVL+ AAY++  +GVSIRALADH  LA THVTTE
Sbjct:   17 RQNVKARQEKRQGFQPPLTVSHEALLTRGRDDAFRQTIYAMVQAFGRLQNCREAFGRALGLTGSQFAVLMSAAYQRHSDGVSIRALADHAHLAPTHVTTE 116          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A127F4Y6_9HYPH (MarR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F4Y6_9HYPH)

HSP 1 Score: 121 bits (304), Expect = 1.160e-32
Identity = 67/101 (66.34%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    7 ARAKLPAKTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            AR   P K  +  AF  PATV+  A+L  G+D AFRET+YLM L F RL +CREAFGRAL LT SQF VLIG A+RQG  GV+IRALADH QLAATHVTTE
Sbjct:   12 ARNVRPNKPGKAKAFTSPATVTLPAVLVGGNDTAFRETIYLMALAFDRLHSCREAFGRALSLTASQFIVLIGTAHRQGQEGVTIRALADHTQLAATHVTTE 112          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001331A288 (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Roseomonas harenae TaxID=2692566 RepID=UPI001331A288)

HSP 1 Score: 119 bits (298), Expect = 1.280e-31
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   64 TVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            T+S   LL+DGSD+AFRET++ MVL  GRL +CR+AFGRA+GLTGSQFAVL+G  + QG+ GVSIRALADH+Q+AATHVTTE
Sbjct:   29 TISLPELLQDGSDLAFRETVFSMVLALGRLQSCRDAFGRAMGLTGSQFAVLVGVGHCQGEQGVSIRALADHVQMAATHVTTE 110          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001356A2DE (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Rhodovarius lipocyclicus TaxID=268410 RepID=UPI001356A2DE)

HSP 1 Score: 117 bits (294), Expect = 1.910e-31
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1
Query:   46 AFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            A+ PP TVSH ALL +G D+ FR+TLYL+VL  G+L+ CREAFG+  GLTGSQFAVL G AY QG+ GV+IRALA H+ +A THVTTE
Sbjct:    7 AYVPPLTVSHPALLLEGRDMRFRDTLYLLVLVLGQLLDCREAFGKRAGLTGSQFAVLFGVAYSQGEAGVTIRALAHHVHMADTHVTTE 94          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A437MNU4_9PROT (MarR family transcriptional regulator n=2 Tax=Rhodovarius crocodyli TaxID=1979269 RepID=A0A437MNU4_9PROT)

HSP 1 Score: 117 bits (294), Expect = 6.450e-31
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   28 KTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGD----NGVSIRALADHIQLAATHVTTE 309
            K +  A + PP TVSH ALL  G DVAFRETLYLMVL  G+L+ CREAFGR  G+TGSQFAVL G AY QG     +GV+IRAL+ H+Q+A THVTTE
Sbjct:   43 KALPAAHYVPPLTVSHPALLAGGRDVAFRETLYLMVLTLGQLLDCREAFGRRAGMTGSQFAVLFGVAYSQGAAKGASGVTIRALSHHVQMADTHVTTE 140          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001485581C (winged helix DNA-binding protein n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI001485581C)

HSP 1 Score: 116 bits (291), Expect = 8.620e-31
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   46 AFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            A+ PP T S +  L+ G D AFRET+YL+V    RL+ACREAFGRA+GLT SQFAVLIG AYRQG  GV+IR LA+H+ LA+THVTTE
Sbjct:   16 AYRPPLTTSRSDFLKTGRDDAFRETIYLLVRSLDRLLACREAFGRAIGLTASQFAVLIGTAYRQGARGVTIRDLAEHVSLASTHVTTE 103          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI001186ADAD (MarR family transcriptional regulator n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI001186ADAD)

HSP 1 Score: 116 bits (290), Expect = 1.720e-30
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   49 FAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            F PP TVSH  LL +GSD  FR  +YL+V   GRL ACREAFGR++GLTGSQFAVLIG AYRQG+ G+SI+ALA ++ LA THVTTE
Sbjct:   27 FVPPKTVSHDDLLVNGSDDTFRHVIYLIVEVLGRLTACREAFGRSVGLTGSQFAVLIGVAYRQGNAGISIKALAQYVHLAPTHVTTE 113          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: A0A7I0K3M7_9HYPH (MarR family transcriptional regulator n=4 Tax=Bacteria TaxID=2 RepID=A0A7I0K3M7_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 7.050e-30
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   49 FAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            F P ATVSH  LLRDGSD  FR+T++LM L  GRL+ CR+AFGR   LTGSQFAVL+G AY +G +GV+IR L++H+ LA THVTTE
Sbjct:   25 FVPAATVSHPDLLRDGSDYEFRDTIHLMTLAIGRLLICRDAFGRRANLTGSQFAVLLGTAYCEGCDGVTIRKLSEHVHLAQTHVTTE 111          
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Match: UPI00165CF42B (MarR family transcriptional regulator n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165CF42B)

HSP 1 Score: 113 bits (283), Expect = 2.000e-29
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   49 FAPPATVSHAALLRDGSDVAFRETLYLMVLGFGRLIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHVTTE 309
            F PP TVSHA LL +GSD  FR+ +YL V   GR+  CREAFGR++GLTGSQFAVL+G AYRQG+ GV+I+ LA +I LA THVTTE
Sbjct:   30 FTPPLTVSHADLLVNGSDDRFRQMIYLFVEVLGRMNMCREAFGRSIGLTGSQFAVLVGVAYRQGEQGVTIKKLAQYIHLAPTHVTTE 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55178.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A327KRD8_9HYPH3.800e-3471.28HTH marR-type domain-containing protein n=2 Tax=Rh... [more]
A0A6N7GPP7_9HYPH2.470e-3366.00MarR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A127F4Y6_9HYPH1.160e-3266.34MarR family transcriptional regulator n=1 Tax=Rhod... [more]
UPI001331A2881.280e-3170.73MarR family winged helix-turn-helix transcriptiona... [more]
UPI001356A2DE1.910e-3165.91MarR family winged helix-turn-helix transcriptiona... [more]
A0A437MNU4_9PROT6.450e-3164.29MarR family transcriptional regulator n=2 Tax=Rhod... [more]
UPI001485581C8.620e-3165.91winged helix DNA-binding protein n=1 Tax=Rhodoligo... [more]
UPI001186ADAD1.720e-3067.82MarR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A7I0K3M7_9HYPH7.050e-3064.37MarR family transcriptional regulator n=4 Tax=Bact... [more]
UPI00165CF42B2.000e-2965.52MarR family transcriptional regulator n=1 Tax=Aqui... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55178contigP-wetherbeei_contig55178:3..311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog717785.HYPMC_0269
PFAMsMarR,MarR_2
Model size309
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.25e-24
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1PTFV@1224|Proteobacteria
DescriptionMarR family
Cds size309
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.9874513-CDS-P-wetherbeei_contig55178:2..3111683186822.9874513-CDS-P-wetherbeei_contig55178:2..311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55178 3..311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55178.1.1prot_P-wetherbeei_contig55178.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55178 3..311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55178.1.1

>prot_P-wetherbeei_contig55178.1.1 ID=prot_P-wetherbeei_contig55178.1.1|Name=mRNA_P-wetherbeei_contig55178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MTARAKLPAKTVRRAAFAPPATVSHAALLRDGSDVAFRETLYLMVLGFGR
LIACREAFGRALGLTGSQFAVLIGAAYRQGDNGVSIRALADHIQLAATHV
TTE
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mRNA from alignment at P-wetherbeei_contig55178:3..311-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55178.1.1 ID=mRNA_P-wetherbeei_contig55178.1.1|Name=mRNA_P-wetherbeei_contig55178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig55178:3..311- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCACGCGCCAAGCTCCCCGCCAAGACAGTCCGCCGCGCCGCGTT CGCGCCGCCGGCCACGGTGTCCCATGCCGCCCTGCTGCGGGACGGCAGCG ATGTCGCGTTCCGCGAGACGCTCTATCTGATGGTGCTGGGTTTCGGCCGG CTGATCGCCTGTCGCGAGGCGTTCGGACGCGCGCTCGGCCTGACCGGATC GCAATTCGCGGTGCTGATCGGCGCCGCCTATCGTCAGGGCGATAACGGCG TGTCGATCCGCGCCCTGGCCGACCATATCCAGCTCGCCGCGACCCATGTC ACCACCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55178:3..311-

>mRNA_P-wetherbeei_contig55178.1.1 ID=mRNA_P-wetherbeei_contig55178.1.1|Name=mRNA_P-wetherbeei_contig55178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig55178:3..311- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCACGCGCCAAGCTCCCCGCCAAGACAGTCCGCCGCGCCGCGTT
CGCGCCGCCGGCCACGGTGTCCCATGCCGCCCTGCTGCGGGACGGCAGCG
ATGTCGCGTTCCGCGAGACGCTCTATCTGATGGTGCTGGGTTTCGGCCGG
CTGATCGCCTGTCGCGAGGCGTTCGGACGCGCGCTCGGCCTGACCGGATC
GCAATTCGCGGTGCTGATCGGCGCCGCCTATCGTCAGGGCGATAACGGCG
TGTCGATCCGCGCCCTGGCCGACCATATCCAGCTCGCCGCGACCCATGTC
ACCACCGAA
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