mRNA_P-wetherbeei_contig5515.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5515.2.1
Unique NamemRNA_P-wetherbeei_contig5515.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: D7FRA6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA6_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.900e-30
Identity = 71/174 (40.80%), Postives = 105/174 (60.34%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGN-RELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQLGHDGR 864
            PV     + L ++W FGC E+ALTVAAML+VQ+PF++PRG  RE R RV +A+  FA + GDH+TYL V+++F+ + +   +C+E+CL++ A+ RA E+R QL R+ ++  PP +                            + SCG D + LRRCLV G+F+N A+L  DGR
Sbjct:  490 PVEPCLAKFLASAWDFGCVEDALTVAAMLSVQNPFVHPRGGGRERRERVREAMEEFAVTEGDHITYLNVFNSFDETGNDSEWCKENCLNHRALVRAGEIRQQLSRYCKKFAPPGQH---------------------------VSSCGDDVNALRRCLVAGFFANVAKLSPDGR 636          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A1V9Z7Z4_9STRA (Pre-mRNA-splicing factor ATP-dependent RNA helicase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7Z4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.790e-29
Identity = 70/168 (41.67%), Postives = 95/168 (56.55%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQL 849
            PV     ++L AS+ FGCTEEALTVA ML+V+  F+NPRG++E + +V + I  FAH  GDH TY  +Y  F  +   R +C+EHCLSY  + RA E+R QL R+V+R G  +K                            + SCG +   L RC+V GYF+NAA+L
Sbjct:  453 PVDPFLSRMLLASFDFGCTEEALTVACMLSVEDVFINPRGSKERKAKVAECIADFAHPQGDHWTYFKIYTEFIENDANRQWCDEHCLSYRILVRAMEIRKQLLRYVKRFGSQDK---------------------------RIQSCGENPESLLRCIVAGYFANAAKL 593          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A067CAK9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CAK9_SAPPC)

HSP 1 Score: 127 bits (320), Expect = 1.750e-28
Identity = 69/168 (41.07%), Postives = 97/168 (57.74%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQL 849
            PV     ++L AS+ F CTEEAL+VA+ML+V+  FLNPRG++E + +V + I  FAH+ GDH TYL +Y  F  +   R +C+EHCL+Y  + RA E+R QL R+V+R G  EK                            + SCG +   L +C+V GYF+NAA+L
Sbjct:  463 PVDPFLSRMLLASFDFKCTEEALSVASMLSVEDVFLNPRGSKERKAKVAECIAEFAHAQGDHWTYLKIYTEFIENDMTRQWCDEHCLNYRILVRAMEIRKQLLRYVKRFGSDEK---------------------------RILSCGANPEPLLQCVVAGYFANAAKL 603          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A835Z495_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z495_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.160e-28
Identity = 80/188 (42.55%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  343 IPVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRG-NRELRLRVDDAIRHFAHSTGDHMTYLAVYDAF-----ELSVDP-RTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQLGHDGR*TSELEG 885
            +P+     +VL ASW FGC  EALTVAAML+V+ PF  PRG   E + R   A+  FA   GDH+TY+ VY+A+       SVD  R +C EHCL   ++ RARE+R QL R+ R   PP+ D                         R LPS G D   + RCLV G+FSNAA+L  DGR  +  EG
Sbjct:  444 LPLSPQLAKVLVASWRFGCVAEALTVAAMLSVRGPFERPRGVGAEAKQRQRSAMAAFATLEGDHITYINVYNAYCDEADGGSVDELREWCAEHCLDARSLRRAREIRGQLERYARLHAPPDHDNDLPVSKQQL---------------RGLPSAGSDMKAVLRCLVSGFFSNAARLSSDGRYRTVREG 616          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A024UEE4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UEE4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.490e-27
Identity = 63/168 (37.50%), Postives = 100/168 (59.52%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQL 849
            PV     ++L AS+ FGCTEEALT+A+M++V   F++PR ++E +L++ +A+  FAH  GDH+TYL +Y+ F  +   R++C+EHCL++  + RA E+R QL R+V+R    +                            A+ SCG D+  + +CLV G+F+NAA+L
Sbjct:  458 PVDPCLSKMLLASFDFGCTEEALTIASMVSVDDIFIHPRASKERQLKLKEAVAEFAHQQGDHITYLHIYNEFLENDCSRSWCDEHCLNHRILMRATEIRKQLHRYVKRFATADN---------------------------AIHSCGDDKQPVLQCLVAGFFANAAKL 598          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A485KLE7_9STRA (Aste57867_8807 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLE7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.910e-25
Identity = 62/181 (34.25%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQLGHDGR*TSELEGK 888
            PV     ++L AS+ FGCTEEALT+A+M++V   F+NPR ++E + ++ + +  FAH  GDH+TYL +Y+ F  +   R++C+EH L +  + RA E+R QL R+V+R                                 ++ SCGG+   + +CLV G+F+NAA+L   G   +  +G+
Sbjct:  462 PVDPFLSKMLLASFEFGCTEEALTIASMVSVDDIFINPRNSKERQAKLKECVAEFAHQQGDHITYLHIYNEFIENDASRSWCDEHYLHHRILVRATEIRKQLHRYVKRFAT---------------------------NGASIQSCGGNNQAVLQCLVAGFFANAAKLHGSGTYRTIKDGR 615          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A6G0WKA1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKA1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.070e-24
Identity = 59/168 (35.12%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQL 849
            PV     ++L +S+ FGCTEEALT+A+M++V   F+NPR ++E + ++ + +  FAH  GDH+TYL +Y+ F  +   R++C+EHCL++  + RA E+R QL R+V+R                                + + SCG +   + +CLV G+F+NAA+L
Sbjct:  460 PVDPFLSKMLLSSFDFGCTEEALTIASMVSVDDIFINPRASKERQAKLKECVAEFAHQQGDHITYLHIYNEFIENDASRSWCDEHCLNHRILLRATEIRKQLHRYVKRFASATD--------------------------KTIQSCGDNVKPVLQCLVAGFFANAAKL 601          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A0P1AZ29_PLAHL (Probable atp-dependent rna helicase dhx35-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZ29_PLAHL)

HSP 1 Score: 115 bits (289), Expect = 2.040e-24
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDE-----SVLRRCLVVGYFSNAAQLGHDG 861
            PV     +VL AS+ F CT E +++A++L+V   F+NPRG++E + ++  A++HFAH  GDHMTY+++Y+ F  +   R +C+E+ LSY A+ RA E+R  L ++V R  P + +                             SC  DE     + +RRCLV GYF+NAA+L  DG
Sbjct:  499 PVAPTLAKVLLASFRFSCTHEMVSIASVLSVGDLFMNPRGSKERQEQLAQALKHFAHPDGDHMTYISIYNEFVENNKSRAWCDENLLSYRALVRATEIRRHLRQYVTRFKPIDINREDEIMSLNS-------------------SCNEDEDKARSAKIRRCLVTGYFANAAKLHADG 656          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A662XI26_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XI26_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.680e-23
Identity = 69/177 (38.98%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  346 PVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDES-----VLRRCLVVGYFSNAAQLGHDG 861
            PV     +VL +S+ F CT E L +A++L+V   FL+ RG+RE + +V +A+ HFA   GDH+ YLA+YDAFE S   R +C+E+ LSY A++RA E+R  L R+V R                                  L S  GDE       +R+CLV GYF+NAA+L  DG
Sbjct:  509 PVAPALAKVLLSSFRFECTREILRIASILSVGDVFLSGRGSRERKEKVAEAMEHFARPEGDHLMYLAIYDAFEESGKSRAWCDEYMLSYRALSRALEIRRHLKRYVARF---------------QTLSGRSPTGDGADLQWRLDSSDGDEDKARSIAIRKCLVSGYFANAAKLHADG 670          
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Match: A0A6V1PNS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PNS9_HETAK)

HSP 1 Score: 109 bits (272), Expect = 2.070e-23
Identity = 58/184 (31.52%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  343 IPVVELEGQVLTASWSFGCTEEALTVAAMLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVDPRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDXXXXXXXXXXXXXXXXXXXXXXXXTRALPSCGGDESVLRRCLVVGYFSNAAQLGHDGR*TSELEGKDI 894
            +P   +  + L +S+ F CTEE LT+AAM++VQ+ F++P+ +++LR ++++A+  FA   GDH+TYL VY+ +        +C E+C++ PA+A+A  +RAQL R++  L                               +++ SC GD   +++ LV G+FS AA++G DG+  +   G ++
Sbjct:   93 MPTEPMIAKALISSYDFECTEEMLTIAAMVSVQNIFIHPKNSKDLREKLEEAMGQFAVREGDHVTYLNVYEDYAGGGGDPEWCAEYCVNRPALAKAVHIRAQLKRYLEML----------------------------CKEKSIQSCQGDIQKIQKALVAGFFSQAARIGPDGKYRTVRNGTEV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5515.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA6_ECTSI1.900e-3040.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9Z7Z4_9STRA1.790e-2941.67Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A067CAK9_SAPPC1.750e-2841.07Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A835Z495_9STRA5.160e-2842.55P-loop containing nucleoside triphosphate hydrolas... [more]
A0A024UEE4_9STRA6.490e-2737.50Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A485KLE7_9STRA5.910e-2534.25Aste57867_8807 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WKA1_9STRA1.070e-2435.12Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1AZ29_PLAHL2.040e-2436.72Probable atp-dependent rna helicase dhx35-like n=1... [more]
A0A662XI26_9STRA1.680e-2338.98Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6V1PNS9_HETAK2.070e-2331.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5515contigP-wetherbeei_contig5515:1131..2535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRA6
Preferred nameDHX35
PFAMsAAA_22,DEAD,HA2,Helicase_C,OB_NTP_bind
Model size1157
Max annot lvl2759|Eukaryota
KEGG koko:K13117
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030054,GO:0032991,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons2
Evalue9.34e-25
EggNOG OGsCOG1643@1|root,KOG0922@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size441
COG categoryL
BRITEko00000,ko00002,ko01000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.6161995-UTR-P-wetherbeei_contig5515:1130..15561683186822.6161995-UTR-P-wetherbeei_contig5515:1130..1556Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5515 1131..1556 +
1683186822.643276-UTR-P-wetherbeei_contig5515:2245..25351683186822.643276-UTR-P-wetherbeei_contig5515:2245..2535Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5515 2246..2535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.6266322-CDS-P-wetherbeei_contig5515:1556..16341683186822.6266322-CDS-P-wetherbeei_contig5515:1556..1634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5515 1557..1634 +
1683186822.6348524-CDS-P-wetherbeei_contig5515:1882..22451683186822.6348524-CDS-P-wetherbeei_contig5515:1882..2245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5515 1883..2245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5515.2.1prot_P-wetherbeei_contig5515.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5515 1557..2245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5515.2.1

>prot_P-wetherbeei_contig5515.2.1 ID=prot_P-wetherbeei_contig5515.2.1|Name=mRNA_P-wetherbeei_contig5515.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MLTVQHPFLNPRGNRELRLRVDDAIRHFAHSTGDHMTYLAVYDAFELSVD
PRTFCEEHCLSYPAMARARELRAQLWRHVRRLGPPEKDDGGRDKGGGCND
GGGGSSGGGGGGTRALPSCGGDESVLRRCLVVGYFSNAAQLGHDGR*
back to top

mRNA from alignment at P-wetherbeei_contig5515:1131..2535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5515.2.1 ID=mRNA_P-wetherbeei_contig5515.2.1|Name=mRNA_P-wetherbeei_contig5515.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1405bp|location=Sequence derived from alignment at P-wetherbeei_contig5515:1131..2535+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGCTGACGAGAGGCGTCGGGGCGGCGATGGCAGAGCTGCCGGTGTCGC CGCGCCTCGCCAAGGTATGGCGGCACTTTGCCCGTTTCTTCCGTCTTCGT TTTTAGCCTTCCCTCTCTCCTACTCACTCTCCTCTCCGCTGGCTGTTTTT AGAAATTAAGGCTCTCTTGTTCATGCCTGCTGCGAAACAATTTGCTTTTG CTTAGCGATTGCTGTGTCTGAAGCTATCGGCAGTTGGAAGAGACATGATC AGAATTTCTCGCTTGTTGCTGTTACAAGTCTGCCGTTGCCCACGCGGAAT GCATCGTTGCCGCCGCCTGATGCCGCCAGCCGCTGAAAAATCATTCCTGT TGTGGAATTGGAGGGGCAGGTGCTGACGGCGTCGTGGTCGTTCGGCTGCA CGGAGGAGGCCCTGACGGTGGCGGCAATGCTGACGGTGCAGCACCCCTTC CTGAACCCCCGCGGGAACCGCGAGCTCCGCCTCCGGGTGGACGACGCCAT TCGGGTGAGTGAGCGAAACGGAGGCGGGATTAACGGTCAAGAGGCGGCCT GGCCTTGTCAGGCACGATGTTGGCGGGTGACATGTAGCGGGGGAAATTTT GCTTGGGCAACGGCCGTGCCGGCAGGTTGTGCGGTGAGCAGAGGCGGCCT GAAACTTTTGTTTTGCTGTCTGTCGGCGTGGATGGAGGGATGGCCTAAAA CTTCTTTCACACCGTTTGCGCTTTTGCCGCCCGCGTCTGACCACCAAAAC AGCACTTCGCGCACTCGACGGGCGACCATATGACGTATCTGGCGGTCTAC GACGCCTTTGAACTGTCAGTAGATCCCAGAACTTTCTGCGAGGAGCACTG TCTCAGCTACCCAGCCATGGCGCGCGCCCGGGAGCTCAGAGCGCAGCTGT GGAGGCACGTGCGGCGCCTCGGCCCGCCGGAGAAGGACGACGGTGGGCGC GATAAAGGCGGCGGTTGCAATGACGGCGGCGGCGGAAGTAGCGGCGGTGG TGGTGGCGGCACAAGGGCGTTGCCGTCATGCGGAGGCGACGAGAGCGTGC TGCGGCGCTGCCTCGTCGTGGGTTACTTTTCCAACGCGGCGCAGCTCGGC CACGATGGCAGGTGAACGAGCGAATTGGAAGGAAAGGACATTGCCAGCTT GATTCCTTTTGTTTTTGTGGCTGTTGCCTTTTGACTGTATGTTTAAGGAG AAAATAAGGAAAGAGGGCATCTTAGTTTCAAAACTAATAGGTAATTTCGC GACGCCCTTTGTCGTTACTATCTCCTTCGTCGCTTTGCCGCACTTTTCGT TTCCTTCGCTCCGCCTACAGGTACCACACGGTGCGGGACCCGCTGGTAGC GCTGGACCTCCACCCTTCCTCCGTCCTGGCCAAGTTCGGCGCCCCGCCCG AGTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5515:1131..2535+

>mRNA_P-wetherbeei_contig5515.2.1 ID=mRNA_P-wetherbeei_contig5515.2.1|Name=mRNA_P-wetherbeei_contig5515.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig5515:1131..2535+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGGTGCAGCACCCCTTCCTGAACCCCCGCGGGAACCGCGAGCT
CCGCCTCCGGGTGGACGACGCCATTCGGCACTTCGCGCACTCGACGGGCG
ACCATATGACGTATCTGGCGGTCTACGACGCCTTTGAACTGTCAGTAGAT
CCCAGAACTTTCTGCGAGGAGCACTGTCTCAGCTACCCAGCCATGGCGCG
CGCCCGGGAGCTCAGAGCGCAGCTGTGGAGGCACGTGCGGCGCCTCGGCC
CGCCGGAGAAGGACGACGGTGGGCGCGATAAAGGCGGCGGTTGCAATGAC
GGCGGCGGCGGAAGTAGCGGCGGTGGTGGTGGCGGCACAAGGGCGTTGCC
GTCATGCGGAGGCGACGAGAGCGTGCTGCGGCGCTGCCTCGTCGTGGGTT
ACTTTTCCAACGCGGCGCAGCTCGGCCACGATGGCAGGTGA
back to top