mRNA_P-wetherbeei_contig54949.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54949.1.1
Unique NamemRNA_P-wetherbeei_contig54949.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A3G5FPN5_9PHAE (Ribosomal protein S11 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPN5_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.440e-61
Identity = 91/122 (74.59%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMKN 366
            IYIKST  N+FCTLMDV++KKVKTSCS KVP Y+NEFNE+ NP+KRG LLGE+FG KT ELGFTEV I+LDS++N+ RKGF+   G+K+IKISFIQLSKAYPHNGCRPSK+RRKK+RTK+K+
Sbjct:   45 IYIKSTKSNLFCTLMDVKEKKVKTSCSLKVPEYDNEFNEKVNPFKRGKLLGEVFGKKTRELGFTEVGIYLDSNMNQARKGFLQVFGRKKIKISFIQLSKAYPHNGCRPSKVRRKKLRTKVKS 166          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: E6ZES1_ECTSI (Ribosomal protein S11 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES1_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.390e-57
Identity = 85/122 (69.67%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMKN 366
            +YIKSTN+NIFC L+D + KKVKTSCS +VP YENEFNEREN +KRG+LLGELFGDK   LG+TE+ ++LD +INK RKG + GL KK++KIS I+L K YPHNGCRPSK RRKK+RTK KN
Sbjct:   36 VYIKSTNKNIFCILLDAQDKKVKTSCSLRVPEYENEFNERENVFKRGILLGELFGDKVENLGYTEIVVYLDFNINKARKGVMVGLSKKKVKISLIELLKNYPHNGCRPSKTRRKKIRTKPKN 157          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A8F0FCY4_9PHAE (Ribosomal protein S11 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FCY4_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.470e-57
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMK 363
            IY++ T RN+FCTLMD   KKVKTSCS +VPAYENE+NERENPY RG+LLG LFGDKT+ELG+ ++ I+L + INKGR+G + GLG+K IKI+ +QL   YPHNGCRPSKIRRKK+RTK K
Sbjct:   31 IYVRCTKRNVFCTLMDTLDKKVKTSCSMRVPAYENEYNERENPYTRGLLLGNLFGDKTIELGYNDLTIYLGAGINKGRRGVVRGLGEKGIKITLVQLGTGYPHNGCRPSKIRRKKIRTKPK 151          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A0U1V7B8_SCYLO (Ribosomal protein S11 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7B8_SCYLO)

HSP 1 Score: 183 bits (465), Expect = 3.510e-57
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMKN 366
            IYIKST RNIFCTL+  E KKVKTSCS +VP Y NEFNEREN +KRG+LLGEL GDK + LG+TEV + LD  +NKGRKG I GL KKRIKIS I+LSK YPHNGCRP KIRRKK+RTK K+
Sbjct:   44 IYIKSTGRNIFCTLIGTEDKKVKTSCSLRVPEYNNEFNERENLFKRGILLGELLGDKIINLGYTEVTVHLDFGLNKGRKGVIIGLKKKRIKISLIELSKGYPHNGCRPKKIRRKKLRTKFKS 165          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: Q94Z02_PYLLI (Ribosomal protein S11 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z02_PYLLI)

HSP 1 Score: 181 bits (459), Expect = 2.020e-56
Identity = 83/121 (68.60%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMK 363
            +++KSTN+NIFCTL+D + KKVKTSCS +VP Y+NEFNER + +KRG+LLG+LFGDK +ELG+TEV I+LD  INK RKG + G+G+K+IKISFI+L K YPHNGCRP+K+RRKKVRTK K
Sbjct:   33 VFVKSTNKNIFCTLLDFKDKKVKTSCSLRVPEYKNEFNERVSLFKRGVLLGQLFGDKIIELGYTEVYIYLDYGINKARKGVVKGIGEKKIKISFIRLIKGYPHNGCRPAKLRRKKVRTKHK 153          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A2H4ZR01_9PHAE (Ribosomal protein S11 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR01_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 7.710e-56
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMKN 366
            IYIKSTNRNIFCTLM  E  KVKTSCS +VP Y NEFNEREN +KRG+LLGEL GD+    G+ EV+I LD  INKGRKG I GL KK++KIS IQLSK YPHNGCRP K+RRKK+RTK K+
Sbjct:   31 IYIKSTNRNIFCTLMSTEDNKVKTSCSLRVPEYNNEFNERENLFKRGILLGELLGDRINTFGYREVSIHLDFGINKGRKGVIVGLKKKKVKISLIQLSKGYPHNGCRPKKMRRKKIRTKFKS 152          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: W5RG05_COSCS (Ribosomal protein S11 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG05_COSCS)

HSP 1 Score: 179 bits (455), Expect = 9.630e-56
Identity = 82/121 (67.77%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMK 363
            I+IKST RN+FCTLMD+++KK+KTSCS +VP YENE+NEREN Y RG+LLG LFG+K++ELG+TE+ I+L S INKGR+G I GL KK +KI+F+ L   YPHNGCRP K+RRKKVRTK K
Sbjct:   36 IFIKSTKRNVFCTLMDIKEKKIKTSCSLRVPTYENEYNERENLYTRGLLLGNLFGNKSIELGYTELTIYLGSGINKGRRGVIRGLYKKEVKITFLYLGTRYPHNGCRPVKVRRKKVRTKPK 156          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A0U1XD94_9PHAE (Ribosomal protein S11 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD94_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.030e-55
Identity = 88/121 (72.73%), Postives = 103/121 (85.12%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMK 363
            +YI+STNRNIFCTLMD++ KKVKTSCS KVP Y NEFNEREN +KRG+LLGEL G++ ++LG+ EVA++LD  INKGRKG + GL KK+IKIS IQLSK Y HNGCRP KIRRKKVRTK K
Sbjct:   41 VYIRSTNRNIFCTLMDLKDKKVKTSCSLKVPDYINEFNERENLFKRGILLGELLGNRIIDLGYKEVALYLDFSINKGRKGVVIGL-KKKIKISLIQLSKGYSHNGCRPKKIRRKKVRTKFK 160          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A089N105_PETFA (Ribosomal protein S11 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N105_PETFA)

HSP 1 Score: 179 bits (453), Expect = 1.710e-55
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMKN 366
            IYIKSTNRNIFCTL++ E  KVKTSCS +VP Y NEFNEREN +KRG LLGEL GD+   LG+ EV+I LD  INKGRKG I GL KK+IKIS IQLSK YPHNGCRP K+RRKKVRTK K+
Sbjct:   34 IYIKSTNRNIFCTLINTEDNKVKTSCSLRVPEYINEFNERENLFKRGTLLGELLGDRVNTLGYKEVSIHLDFGINKGRKGVIIGLKKKKIKISLIQLSKGYPHNGCRPKKMRRKKVRTKFKS 155          
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Match: A0A7U1G3L1_9PHAE (Ribosomal protein S11 n=1 Tax=Laminaria solidungula TaxID=309363 RepID=A0A7U1G3L1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.340e-55
Identity = 81/121 (66.94%), Postives = 99/121 (81.82%), Query Frame = 1
Query:    1 IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLLGELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKAYPHNGCRPSKIRRKKVRTKMK 363
            I+IKST RN+FCTL+D ++KKVKTSCS +VP YENE+NEREN Y RG+LLG LFGDK +ELG+TE+ I+L S INKGR+G + GL KK +KI+F+ L   YPHNGCRP K+RRKK RTK K
Sbjct:   42 IFIKSTKRNVFCTLLDTDEKKVKTSCSLRVPVYENEYNERENLYTRGLLLGNLFGDKAIELGYTELTIYLGSGINKGRRGVVRGLSKKEVKITFLYLGTRYPHNGCRPVKVRRKKFRTKPK 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3G5FPN5_9PHAE1.440e-6174.59Ribosomal protein S11 n=1 Tax=Cladosiphon okamuran... [more]
E6ZES1_ECTSI1.390e-5769.67Ribosomal protein S11 n=2 Tax=Ectocarpus siliculos... [more]
A0A8F0FCY4_9PHAE2.470e-5768.60Ribosomal protein S11 n=1 Tax=Pseudochorda nagaii ... [more]
A0A0U1V7B8_SCYLO3.510e-5772.95Ribosomal protein S11 n=1 Tax=Scytosiphon lomentar... [more]
Q94Z02_PYLLI2.020e-5668.60Ribosomal protein S11 n=1 Tax=Pylaiella littoralis... [more]
A0A2H4ZR01_9PHAE7.710e-5671.31Ribosomal protein S11 n=2 Tax=Endarachne binghamia... [more]
W5RG05_COSCS9.630e-5667.77Ribosomal protein S11 n=1 Tax=Costaria costata Tax... [more]
A0A0U1XD94_9PHAE1.030e-5572.73Ribosomal protein S11 n=1 Tax=Colpomenia peregrina... [more]
A0A089N105_PETFA1.710e-5572.95Ribosomal protein S11 n=1 Tax=Petalonia fascia Tax... [more]
A0A7U1G3L1_9PHAE3.340e-5566.94Ribosomal protein S11 n=1 Tax=Laminaria solidungul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54949contigP-wetherbeei_contig54949:3..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog717231.Flexsi_0489
Preferred namerpsK
PFAMsRibosomal_S11
Model size369
Max annot lvl200930|Deferribacteres
KEGG koko:K02948
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.12e-05
EggNOG OGsCOG0100@1|root,COG0100@2|Bacteria,2GFII@200930|Deferribacteres
DescriptionLocated on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Cds size369
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.427305-CDS-P-wetherbeei_contig54949:2..3711683186819.427305-CDS-P-wetherbeei_contig54949:2..371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54949 3..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54949.1.1prot_P-wetherbeei_contig54949.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54949 3..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54949.1.1

>prot_P-wetherbeei_contig54949.1.1 ID=prot_P-wetherbeei_contig54949.1.1|Name=mRNA_P-wetherbeei_contig54949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
IYIKSTNRNIFCTLMDVEQKKVKTSCSFKVPAYENEFNERENPYKRGMLL
GELFGDKTLELGFTEVAIFLDSDINKGRKGFIGGLGKKRIKISFIQLSKA
YPHNGCRPSKIRRKKVRTKMKN*
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mRNA from alignment at P-wetherbeei_contig54949:3..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54949.1.1 ID=mRNA_P-wetherbeei_contig54949.1.1|Name=mRNA_P-wetherbeei_contig54949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig54949:3..371+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTATATAAAAAGTACAAATAGAAATATTTTTTGTACTTTAATGGATGT CGAACAAAAAAAAGTTAAAACAAGTTGTTCTTTTAAAGTACCTGCGTATG AAAATGAATTTAATGAAAGAGAAAATCCTTATAAACGTGGTATGTTGTTA GGGGAGTTATTTGGAGATAAAACTCTTGAACTTGGTTTTACGGAAGTTGC TATTTTTTTAGATTCTGATATAAATAAAGGTCGTAAAGGTTTTATAGGTG GTCTTGGTAAAAAAAGAATTAAAATTTCTTTTATTCAATTATCAAAAGCT TATCCCCATAATGGATGTCGTCCTTCTAAGATACGTCGTAAAAAGGTGCG TACTAAAATGAAGAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54949:3..371+

>mRNA_P-wetherbeei_contig54949.1.1 ID=mRNA_P-wetherbeei_contig54949.1.1|Name=mRNA_P-wetherbeei_contig54949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig54949:3..371+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTATATAAAAAGTACAAATAGAAATATTTTTTGTACTTTAATGGATGT
CGAACAAAAAAAAGTTAAAACAAGTTGTTCTTTTAAAGTACCTGCGTATG
AAAATGAATTTAATGAAAGAGAAAATCCTTATAAACGTGGTATGTTGTTA
GGGGAGTTATTTGGAGATAAAACTCTTGAACTTGGTTTTACGGAAGTTGC
TATTTTTTTAGATTCTGATATAAATAAAGGTCGTAAAGGTTTTATAGGTG
GTCTTGGTAAAAAAAGAATTAAAATTTCTTTTATTCAATTATCAAAAGCT
TATCCCCATAATGGATGTCGTCCTTCTAAGATACGTCGTAAAAAGGTGCG
TACTAAAATGAAGAATTGA
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