mRNA_P-wetherbeei_contig54871.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54871.1.1
Unique NamemRNA_P-wetherbeei_contig54871.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Match: A0A6B1FZ33_9CHLR (Extracellular solute-binding protein n=1 Tax=Caldilineaceae bacterium SB0675_bin_29 TaxID=2605266 RepID=A0A6B1FZ33_9CHLR)

HSP 1 Score: 160 bits (405), Expect = 1.160e-46
Identity = 81/171 (47.37%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    7 LGIYEDGSWRFGLLKALDDLKFEWGSFFMPILEKGDGVGKSEYATGKEPPAIGGATAQQYGITNTAEKNGTVDLCVDWLRYITAPAQAGPIIAEKGQFLPNIKDVDVNDDLKDALAAVTSGVGEAGMIAYSDKLDAEAAAKIDTAVNNYLLGRADLDKTAQDIQDLLMTSA 519
            + +YEDGSWRFG LKA   + FEW +F+ P + + D    S +A G+  P IGGATA Q+ +    E++G V L VD+LRY+TAP  AG +IAE G FLPNIK VDVN DL++ L A+T G+GEAGM+ Y DK+  E   KID    ++ L     ++ A+ I +LL+  A
Sbjct:   29 VAVYEDGSWRFGYLKADPLVDFEWSTFYAPTITEAD----SPFAIGEAAPPIGGATAAQWAMATKTERDGIVPLAVDFLRYVTAPQNAGRMIAETGTFLPNIKGVDVNPDLREPLRAITEGLGEAGMVTYPDKIGTEQREKIDAIWTDFKLDVVSQEQAAEQINELLLEYA 195          
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Match: A0A6N8W445_9CHLR (Extracellular solute-binding protein n=5 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6N8W445_9CHLR)

HSP 1 Score: 158 bits (400), Expect = 4.670e-43
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    7 LGIYEDGSWRFGLLKALDDLKFEWGSFFMPILEKGDGVGKSEYATGKEPPAIGGATAQQYGITNTAEKNGTVDLCVDWLRYITAPAQAGPIIAEKGQFLPNIKDVDVNDDLKDALAAVTSGVGEAGMIAYSDKLDAEAAAKIDTAVNNYLLGRADLDKTAQDIQDLLMTSA 519
            + ++EDGSWRFG LKA   + FEW +F+ P + + D    S +A G+  P IGGATA Q+ +   AE++G V L +D+LRY+TAP  AG +IAE G FLPNIK VDVN DL++ L A+T G+GEAGM+ Y DK+  E   KI     ++ L     D+ A+ I +LL+  A
Sbjct:  312 VAVFEDGSWRFGYLKADPLVDFEWSTFYAPTITEAD----SPFAIGEAAPPIGGATAAQWALATKAEQDGIVPLAIDFLRYVTAPQNAGRMIAETGTFLPNIKGVDVNPDLREPLRAITEGLGEAGMVTYPDKIGTEQREKIAAIWTDFKLDVVSQDEAAEQINELLLEYA 478          
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Match: A0A3A0AFI5_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AFI5_9CHLR)

HSP 1 Score: 157 bits (396), Expect = 1.820e-42
Identity = 80/170 (47.06%), Postives = 113/170 (66.47%), Query Frame = 1
Query:    4 QLGIYEDGSWRFGLLKALDDLKFEWGSFFMPILEKGDGVGKSEYATGKEPPAIGGATAQQYGITNTAEKNGTVDLCVDWLRYITAPAQAGPIIAEKGQFLPNIKDVDVNDDLKDALAAVTSGVGEAGMIAYSDKLDAEAAAKIDTAVNNYLLGRADLDKTAQDIQDLLMT 513
            ++ ++EDGSWRFG LKA   + FEWGSF+ P + + D    S +ATG+  P IGGATA Q+ ++  +E++G + L +D+LR++TAP  A  +I+E GQFLPNIK VDVN DLK+ L A+T G+GEAGM+ Y DK+  E   KI     ++ L +   ++  Q I D LMT
Sbjct:  312 EVAVFEDGSWRFGSLKADPLVDFEWGSFYAPTITEQD----SPFATGRAAPPIGGATAAQWAVSTRSERDGILPLVIDFLRFVTAPQNANRLISELGQFLPNIKGVDVNPDLKEPLRAITEGLGEAGMVTYPDKIGTEQREKIAQVWTDFHLDQITQEEAQQQI-DALMT 476          
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Match: A0A7W1NXV2_9CHLR (Carbohydrate ABC transporter substrate-binding protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7W1NXV2_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 1.050e-13
Identity = 60/180 (33.33%), Postives = 85/180 (47.22%), Query Frame = 1
Query:    1 GQLGIYEDGSWRFGLLKALDDLKFEWGSFFMPILEKGDGVGKSEYATGKEPPAIGGATAQQYGITNTAEKNGTVDLCVDWLRYITAPAQAGPIIAEKGQFLPNIKDVDVNDDLKDALAAVTSGVGEAGMIA---YSD---KLDAEAAAKIDTAVNNYLLGRADLDKTAQDIQDLLMTSAK 522
            GQLG Y  G+W+   +   D   FE+G  ++P   K D  G    A G      G ++A QYGI  +A KNG +DL VD+L+YI+AP   GP+    G FLP +K  D           V SG  +   +    ++D   +LD  A      A+  + LG+ D   T   +Q + M  AK
Sbjct:  309 GQLGAYWTGTWKNKTIA--DAAPFEYGVTYIPGFTKEDAPG----AQGTAYRVGGPSSAGQYGIAQSAAKNGKLDLAVDFLQYISAPQNFGPMATSLGGFLPLVKGTDAGP--------VMSGFEDVAKLPERMFNDPDNRLDLAARDPWINAMQAFFLGQTDDATTLTALQGIWMDGAK 474          
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Match: A0A3A0A279_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0A279_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 3.160e-10
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 GQLGIYEDGSWRFGLLKALDDLKFEWGSFFMPILEKGDGVGKSEYATGKEPPAIGGATAQ-QYGITNTAEKNGTV-----DLCVDWLRYITAPAQAGPIIAEKGQFLPNIKDVDVNDDLKDALAAVTS 366
            G + +Y +GSW        ++++FEW +F +P  ++      +E+ TG   P IGG +A  QY I+ T + N T+     +  VD+L+++TAP  AGP++ + G F+P I   +    + + + A+++
Sbjct:  353 GDVAMYWNGSWAVPQTLNNEEVQFEWATFSLPTFDEE----ATEFYTGVSAPMIGGPSAAFQYSIS-TNQANSTMSPEKLEAAVDFLKFLTAPQNAGPMVNDLGSFIPTIAGTEPLPSMAELIQAMSN 475          
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Match: A0A7C3S2I0_9FIRM (Carbohydrate ABC transporter substrate-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3S2I0_9FIRM)

HSP 1 Score: 67.0 bits (162), Expect = 7.940e-10
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 GQLGIYEDGSWRFGLLKALDDL-KFEWGSFFMPILEKGDGVGKSEYATGKEPPAIGGATAQQYGITNTAEKNGTVDLCVDWLRYITAPAQAGPIIAEKGQFLPNIKDV 321
            G+  ++ +GSW    ++ LD L KFEWG    P++            T K     G + A Q+ +  +A+K G +++ VD+L Y+TAP  AGP+IA+ G FLP+IK V
Sbjct:  305 GKAVMHLNGSWMIKPVR-LDPLRKFEWGWMPFPVVTNKTTKYAPRPGTIKGLTLGGPSAAFQFNVPASAQKQGMLEVAVDFLMYLTAPKNAGPLIADLGAFLPSIKGV 411          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54871.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6B1FZ33_9CHLR1.160e-4647.37Extracellular solute-binding protein n=1 Tax=Caldi... [more]
A0A6N8W445_9CHLR4.670e-4346.78Extracellular solute-binding protein n=5 Tax=uncla... [more]
A0A3A0AFI5_9CHLR1.820e-4247.06Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7W1NXV2_9CHLR1.050e-1333.33Carbohydrate ABC transporter substrate-binding pro... [more]
A0A3A0A279_9CHLR3.160e-1029.69Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7C3S2I0_9FIRM7.940e-1037.04Carbohydrate ABC transporter substrate-binding pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54871contigP-wetherbeei_contig54871:6..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog357809.Cphy_1013
PFAMsSBP_bac_1,SBP_bac_8
Model size522
Max annot lvl2|Bacteria
KEGG koko:K02027,ko:K10117
KEGG TC3.A.1.1,3.A.1.1.28
KEGG Pathwayko02010,map02010
KEGG ModuleM00196,M00207
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000162
EggNOG OGsCOG1653@1|root,COG1653@2|Bacteria
Descriptioncarbohydrate transport
Cds size522
COG categoryG
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.6340017-CDS-P-wetherbeei_contig54871:5..5271683186818.6340017-CDS-P-wetherbeei_contig54871:5..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54871 6..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54871.1.1prot_P-wetherbeei_contig54871.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54871 6..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54871.1.1

>prot_P-wetherbeei_contig54871.1.1 ID=prot_P-wetherbeei_contig54871.1.1|Name=mRNA_P-wetherbeei_contig54871.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
GQLGIYEDGSWRFGLLKALDDLKFEWGSFFMPILEKGDGVGKSEYATGKE
PPAIGGATAQQYGITNTAEKNGTVDLCVDWLRYITAPAQAGPIIAEKGQF
LPNIKDVDVNDDLKDALAAVTSGVGEAGMIAYSDKLDAEAAAKIDTAVNN
YLLGRADLDKTAQDIQDLLMTSAK
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mRNA from alignment at P-wetherbeei_contig54871:6..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54871.1.1 ID=mRNA_P-wetherbeei_contig54871.1.1|Name=mRNA_P-wetherbeei_contig54871.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig54871:6..527- (Phaeothamnion wetherbeei SAG_119_79)
GGCCAGCTCGGCATCTACGAGGATGGCTCCTGGCGGTTCGGCCTCCTGAA GGCGCTCGATGACCTCAAGTTCGAGTGGGGGTCCTTCTTCATGCCGATCC TGGAGAAGGGTGATGGCGTCGGCAAGTCCGAGTACGCCACCGGCAAGGAG CCGCCCGCCATTGGTGGTGCGACAGCCCAGCAGTACGGCATCACGAACAC CGCCGAGAAGAACGGCACCGTCGATCTCTGCGTCGACTGGCTGCGCTACA TCACCGCGCCGGCGCAGGCAGGGCCGATCATCGCGGAGAAGGGCCAGTTC CTTCCGAACATCAAGGATGTCGATGTCAACGACGACCTGAAGGATGCGTT GGCGGCGGTGACTTCCGGCGTCGGCGAGGCCGGCATGATTGCCTACAGCG ACAAGCTGGATGCCGAGGCCGCCGCCAAGATCGATACCGCCGTGAACAAT TACCTTCTCGGCCGCGCCGATCTCGACAAGACGGCCCAGGATATCCAGGA CCTGCTGATGACCTCGGCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54871:6..527-

>mRNA_P-wetherbeei_contig54871.1.1 ID=mRNA_P-wetherbeei_contig54871.1.1|Name=mRNA_P-wetherbeei_contig54871.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig54871:6..527- (Phaeothamnion wetherbeei SAG_119_79)
GGCCAGCTCGGCATCTACGAGGATGGCTCCTGGCGGTTCGGCCTCCTGAA
GGCGCTCGATGACCTCAAGTTCGAGTGGGGGTCCTTCTTCATGCCGATCC
TGGAGAAGGGTGATGGCGTCGGCAAGTCCGAGTACGCCACCGGCAAGGAG
CCGCCCGCCATTGGTGGTGCGACAGCCCAGCAGTACGGCATCACGAACAC
CGCCGAGAAGAACGGCACCGTCGATCTCTGCGTCGACTGGCTGCGCTACA
TCACCGCGCCGGCGCAGGCAGGGCCGATCATCGCGGAGAAGGGCCAGTTC
CTTCCGAACATCAAGGATGTCGATGTCAACGACGACCTGAAGGATGCGTT
GGCGGCGGTGACTTCCGGCGTCGGCGAGGCCGGCATGATTGCCTACAGCG
ACAAGCTGGATGCCGAGGCCGCCGCCAAGATCGATACCGCCGTGAACAAT
TACCTTCTCGGCCGCGCCGATCTCGACAAGACGGCCCAGGATATCCAGGA
CCTGCTGATGACCTCGGCGAAG
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