mRNA_P-wetherbeei_contig5467.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.540e-45 Identity = 77/116 (66.38%), Postives = 96/116 (82.76%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+++RGLMRQHIDS+DYFVNV+I KIV + NREVLS+ DPKFFL+YT + VGTP I ED + + ITPFQCRLRDCTYSAP++VNV+Y RGR +V+K N+ IGRIP+ML SC+C
Sbjct: 88 LKLRGLMRQHIDSYDYFVNVDISKIVQAKGNREVLSDVDPKFFLQYTGITVGTPCIEEDDYTVKS--ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKC 201
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC) HSP 1 Score: 162 bits (410), Expect = 5.330e-44 Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+Q+RGLMRQHIDSFD+FVN EIK IV SNRE+ SEADPKF+LRYTDV VG PS+ +D+ +TPFQCRLRDCTYSAP+ V+V+Y RGR +V K+ V IGRIPIMLRSC+C
Sbjct: 56 LQLRGLMRQHIDSFDFFVNREIKDIVNAASNRELRSEADPKFWLRYTDVHVGEPSVDDDAYVSSR--VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKC 169
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.360e-42 Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+++RGLMRQHIDSFD+FV E+K+IV + S E+ S+ DPKF+LRYTD VG PS+ ED+ + TPFQCRLRDCTYSAP+YVNV+Y RGR +V KK V +GR+PIMLRS +C
Sbjct: 74 LKLRGLMRQHIDSFDHFVTTEMKQIVQSPSACEIRSDHDPKFYLRYTDCWVGEPSVEEDAYAFS--QATPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKC 187
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A7S4I9T1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9T1_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.670e-41 Identity = 74/116 (63.79%), Postives = 93/116 (80.17%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+++RGLM+QHIDSFDYFVN+E+K+IV + S E+ SE DPKF+LRYTD VG PS+ EDS + +PFQCRLRDCTYSAP+YVNV+Y RGR +V KK V +GR+PIMLRS +C
Sbjct: 310 LKLRGLMKQHIDSFDYFVNIEMKQIVQSPSACEIRSEHDPKFYLRYTDCWVGEPSVEEDSYAFT--QASPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVVVGRMPIMLRSSKC 423
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA) HSP 1 Score: 153 bits (387), Expect = 6.700e-41 Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 1
Query: 7 MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
MRGLM QHIDSFDYFVNV+IK IV SNREV S+ DP+++LRYT+V VG P I +D+ + P TPF+CRLRDCTY AP+ V++K+ RG +V+ VPIGRIPIMLRSC+C
Sbjct: 33 MRGLMTQHIDSFDYFVNVDIKNIVNAASNREVRSDVDPRWWLRYTNVSVGEPEIFDDA--HQRTPATPFECRLRDCTYYAPIIVSIKFTRGNQIVNMSGVPIGRIPIMLRSCKC 144
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A448ZSN6_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSN6_9STRA) HSP 1 Score: 153 bits (386), Expect = 9.140e-41 Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
++MR LMRQHIDSFD+FVNVE+K+IV + S RE+ SE DP F+LRYTD +G PS+ EDS + TPFQCRLRDCTYSAP+YVNV+Y RGR +V K+ V IG++PIMLRS +C
Sbjct: 149 LKMRSLMRQHIDSFDHFVNVEMKQIVQSPSAREIRSEHDPNFYLRYTDCWLGEPSVEEDSYATS--TATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKC 262
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.250e-40 Identity = 72/116 (62.07%), Postives = 93/116 (80.17%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+++RGL+ QHI+SF+YFVNVEIKKIV QSN EV SE DPKF+LRYT+V VG P++ + + + ITPF+CRLRDCTYSA +YV+V+Y R +V K+ +PIGRIPIMLRSC+C
Sbjct: 30 LKLRGLITQHIESFNYFVNVEIKKIVAAQSNFEVRSEQDPKFYLRYTNVYVGEPTVDDPNFVESS--ITPFECRLRDCTYSAMIYVDVRYTRNNKIVVKQKIPIGRIPIMLRSCKC 143
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA) HSP 1 Score: 150 bits (379), Expect = 8.040e-40 Identity = 73/116 (62.93%), Postives = 91/116 (78.45%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+++R LMRQHIDSFDY VNVE+K+IV + S RE+ SE DP F+LRYTD +G PS+ EDS + TPFQCRLRDCTYSAP+YVNV+Y RGR +V K+ V IG++PIMLRS +C
Sbjct: 96 LKIRSLMRQHIDSFDYLVNVELKQIVQSPSAREIRSEHDPNFYLRYTDCWLGEPSLEEDSYAVS--TATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKC 209
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: A0A1Z5KRH4_FISSO (DNA-directed RNA polymerase subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRH4_FISSO) HSP 1 Score: 150 bits (378), Expect = 1.100e-39 Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+Q+R L+RQH+DSFDYFV E+++IV + S RE+ SE DPKF+LRY VG PSI EDS + + ITPF+CRLRDCTYSAP+YVNV+Y RGR V K+NV IGRIPIMLRS +C
Sbjct: 107 LQLRSLLRQHVDSFDYFVETEMQQIVKSASAREIRSEHDPKFYLRYEACWVGEPSIEEDSYTMKS--ITPFECRLRDCTYSAPIYVNVRYIRGRQPVVKRNVMIGRIPIMLRSKKC 220
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Match: F0J944_AMBVA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amblyomma variegatum TaxID=34610 RepID=F0J944_AMBVA) HSP 1 Score: 139 bits (350), Expect = 1.620e-39 Identity = 64/116 (55.17%), Postives = 89/116 (76.72%), Query Frame = 1
Query: 1 VQMRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGTPSIVEDSTSDEGRPITPFQCRLRDCTYSAPVYVNVKYPRGRVMVSKKNVPIGRIPIMLRSCRC 348
+ MRGL+R HIDSF++F+NVEIK+I+ ++N + S+ADP+F+L+Y D+ VGTP++ ED T GRP TP +CRLRD TYSAP+ V+++Y RG+ V + PIGR+PIMLRS C
Sbjct: 36 LSMRGLVRHHIDSFNHFINVEIKEIM--RANERITSDADPQFYLKYLDIHVGTPNVQEDFTV--GRPTTPHECRLRDMTYSAPITVDIEYTRGQERVMRSGFPIGRMPIMLRSANC 147 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5467.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5467.2.1 >prot_P-wetherbeei_contig5467.2.1 ID=prot_P-wetherbeei_contig5467.2.1|Name=mRNA_P-wetherbeei_contig5467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp MRGLMRQHIDSFDYFVNVEIKKIVLTQSNREVLSEADPKFFLRYTDVRVGback to top mRNA from alignment at P-wetherbeei_contig5467:2656..3645- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5467.2.1 ID=mRNA_P-wetherbeei_contig5467.2.1|Name=mRNA_P-wetherbeei_contig5467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig5467:2656..3645- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5467:2656..3645- >mRNA_P-wetherbeei_contig5467.2.1 ID=mRNA_P-wetherbeei_contig5467.2.1|Name=mRNA_P-wetherbeei_contig5467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig5467:2656..3645- (Phaeothamnion wetherbeei SAG_119_79)back to top |