mRNA_P-wetherbeei_contig5467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI) HSP 1 Score: 164 bits (415), Expect = 5.180e-50 Identity = 86/122 (70.49%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAP-KAGARA 363
+ EQLSKNRVIIE D K SAAITSSTHERK+RCNI++KNGKVY+K N+LGDDVPIV++L+AMG SDQEIVQLVGSEP+I++AF ASLE++ + V+T +QAL Y+G KMR P KAGARA
Sbjct: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARA 122
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.860e-45 Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAP-KAGARA 363
+ EQLSKNRVIIE D K SAAITSSTHERK+RCNI++KNGKVY+K N+LGDDVPIV++L+AMG SDQEIVQLVGSEP+I++AF ASLE++ + VYT +QAL Y+G KMR P KAGARA
Sbjct: 236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARA 357
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA) HSP 1 Score: 157 bits (397), Expect = 4.670e-42 Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKA 351
+ EQLSKNRVIIELD KG SA I SSTHERK+RC I+VK+GKVYL N LGDDVPIV+ +KAMG+ESDQEIVQLVGSEP +V AF S+EEA+ V T +QAL Y+G+KMR PKA
Sbjct: 212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNPKA 328
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.030e-40 Identity = 75/114 (65.79%), Postives = 95/114 (83.33%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 342
+HEQLSKNRVIIELD K SAAITSSTH+RK+RCNI+ KN K+YLK N+LGDD+PIVI+LKAMG+E DQEIVQLVG+EPE++ FA SLEE +++ +QALT++G ++ A
Sbjct: 66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRVTA 179
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.630e-40 Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 342
+ EQLSKNRVIIE+D+KG +A ITSSTHERK+RC+I+VK G+VYLK N LG+D+PI IV KAMG+ESDQEIVQ+VGSEPE + FA SLEE + + T +QALTY+G K+RA
Sbjct: 179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRA 292
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S0RSE3_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RSE3_9CHLO) HSP 1 Score: 134 bits (338), Expect = 1.820e-37 Identity = 61/117 (52.14%), Postives = 93/117 (79.49%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKA 351
I EQLSKNR+II++D+KG ++++TSSTHERK++ N+ K+G+VYL+ N DD+PI+++LKAMG+ESDQE+VQL+G+ +IV+ A S++E T V+T +QAL YMG K++ ++
Sbjct: 44 IQEQLSKNRIIIDIDSKGEVASSVTSSTHERKSKTNLVTKHGRVYLRHNTFSDDIPILVMLKAMGVESDQEVVQLIGTSRDIVNLLAPSIQECCTLQVHTQQQALEYMGSKVKTARS 160
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA) HSP 1 Score: 142 bits (359), Expect = 6.210e-37 Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKAG 354
IHEQLSKNRVIIE DAK C SA+ITSSTHERK++ IY+ GK++LK N +DVPI IV+KAMG+ESD EIVQLVGS+PEIV A A SLEE +YT Q L Y+G K+R+ +G
Sbjct: 377 IHEQLSKNRVIIEEDAKKCISASITSSTHERKSKAYIYINKGKIFLKSNIFAEDVPIAIVIKAMGVESDLEIVQLVGSDPEIVDALAISLEEPNKLGLYTQLQCLRYIGGKIRSRVSG 494
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA) HSP 1 Score: 137 bits (344), Expect = 8.340e-37 Identity = 73/120 (60.83%), Postives = 88/120 (73.33%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA-PKAGA 357
IHEQLSKNR+IIE D K A+ITSSTHERK+R NI++ G+VYLK N+ G D+PIVIV + MG+ESDQEIV LVGSE +I +AS EEA V+T +QAL Y+G KM A K GA
Sbjct: 184 IHEQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGA 303
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S4I9T1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9T1_9STRA) HSP 1 Score: 142 bits (358), Expect = 8.490e-37 Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 342
+ EQLSKNRVI+E+D KG A+ITSSTHERK++ I VK+G+VY++ N LGDD+PI + KAMGMESD EIVQ VGSEPEI+ A A S+EE + +YT QAL Y+G K+RA
Sbjct: 458 MQEQLSKNRVILEIDGKGLVQASITSSTHERKSKAYILVKHGRVYMRSNTLGDDIPIAVAFKAMGMESDLEIVQTVGSEPEIMDALALSMEEPVKLGIYTETQALKYIGNKIRA 571
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: Q2N123_9METZ (DNA-directed RNA polymerase (Fragment) n=1 Tax=Leucosolenia sp. AR-2003 TaxID=232267 RepID=Q2N123_9METZ) HSP 1 Score: 138 bits (347), Expect = 1.070e-36 Identity = 66/119 (55.46%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKAGA 357
I EQLSKNR+I+E D KG + + SSTHERK+R ++ VK+ K+Y+K N DDVP+V+V KAMGMESDQEIVQ++G+E E+++ FA SLEEA + +++T++QAL YMG +R + GA
Sbjct: 137 IQEQLSKNRMIVETDRKGMVTCTVASSTHERKSRTSLIVKHQKLYIKHNTFTDDVPVVVVFKAMGMESDQEIVQMIGTEEELMAGFAPSLEEAASKNIFTSQQALEYMGSLVRQRQWGA 255 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5467.1.1 >prot_P-wetherbeei_contig5467.1.1 ID=prot_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNAback to top mRNA from alignment at P-wetherbeei_contig5467:1127..2025- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5467.1.1 ID=mRNA_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=899bp|location=Sequence derived from alignment at P-wetherbeei_contig5467:1127..2025- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5467:1127..2025- >mRNA_P-wetherbeei_contig5467.1.1 ID=mRNA_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig5467:1127..2025- (Phaeothamnion wetherbeei SAG_119_79)back to top |