mRNA_P-wetherbeei_contig5467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5467.1.1
Unique NamemRNA_P-wetherbeei_contig5467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 5.180e-50
Identity = 86/122 (70.49%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAP-KAGARA 363
            + EQLSKNRVIIE D K   SAAITSSTHERK+RCNI++KNGKVY+K N+LGDDVPIV++L+AMG  SDQEIVQLVGSEP+I++AF ASLE++ +  V+T +QAL Y+G KMR P KAGARA
Sbjct:    1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARA 122          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.860e-45
Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAP-KAGARA 363
            + EQLSKNRVIIE D K   SAAITSSTHERK+RCNI++KNGKVY+K N+LGDDVPIV++L+AMG  SDQEIVQLVGSEP+I++AF ASLE++ +  VYT +QAL Y+G KMR P KAGARA
Sbjct:  236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARA 357          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.670e-42
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKA 351
            + EQLSKNRVIIELD KG  SA I SSTHERK+RC I+VK+GKVYL  N LGDDVPIV+ +KAMG+ESDQEIVQLVGSEP +V AF  S+EEA+   V T +QAL Y+G+KMR PKA
Sbjct:  212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNPKA 328          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.030e-40
Identity = 75/114 (65.79%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 342
            +HEQLSKNRVIIELD K   SAAITSSTH+RK+RCNI+ KN K+YLK N+LGDD+PIVI+LKAMG+E DQEIVQLVG+EPE++  FA SLEE     +++ +QALT++G ++ A
Sbjct:   66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRVTA 179          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.630e-40
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 342
            + EQLSKNRVIIE+D+KG  +A ITSSTHERK+RC+I+VK G+VYLK N LG+D+PI IV KAMG+ESDQEIVQ+VGSEPE  + FA SLEE +   + T +QALTY+G K+RA
Sbjct:  179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRA 292          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S0RSE3_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RSE3_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 1.820e-37
Identity = 61/117 (52.14%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKA 351
            I EQLSKNR+II++D+KG  ++++TSSTHERK++ N+  K+G+VYL+ N   DD+PI+++LKAMG+ESDQE+VQL+G+  +IV+  A S++E  T  V+T +QAL YMG K++  ++
Sbjct:   44 IQEQLSKNRIIIDIDSKGEVASSVTSSTHERKSKTNLVTKHGRVYLRHNTFSDDIPILVMLKAMGVESDQEVVQLIGTSRDIVNLLAPSIQECCTLQVHTQQQALEYMGSKVKTARS 160          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.210e-37
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKAG 354
            IHEQLSKNRVIIE DAK C SA+ITSSTHERK++  IY+  GK++LK N   +DVPI IV+KAMG+ESD EIVQLVGS+PEIV A A SLEE     +YT  Q L Y+G K+R+  +G
Sbjct:  377 IHEQLSKNRVIIEEDAKKCISASITSSTHERKSKAYIYINKGKIFLKSNIFAEDVPIAIVIKAMGVESDLEIVQLVGSDPEIVDALAISLEEPNKLGLYTQLQCLRYIGGKIRSRVSG 494          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.340e-37
Identity = 73/120 (60.83%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA-PKAGA 357
            IHEQLSKNR+IIE D K    A+ITSSTHERK+R NI++  G+VYLK N+ G D+PIVIV + MG+ESDQEIV LVGSE +I    +AS EEA    V+T +QAL Y+G KM A  K GA
Sbjct:  184 IHEQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGA 303          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: A0A7S4I9T1_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I9T1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.490e-37
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRA 342
            + EQLSKNRVI+E+D KG   A+ITSSTHERK++  I VK+G+VY++ N LGDD+PI +  KAMGMESD EIVQ VGSEPEI+ A A S+EE +   +YT  QAL Y+G K+RA
Sbjct:  458 MQEQLSKNRVILEIDGKGLVQASITSSTHERKSKAYILVKHGRVYMRSNTLGDDIPIAVAFKAMGMESDLEIVQTVGSEPEIMDALALSMEEPVKLGIYTETQALKYIGNKIRA 571          
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Match: Q2N123_9METZ (DNA-directed RNA polymerase (Fragment) n=1 Tax=Leucosolenia sp. AR-2003 TaxID=232267 RepID=Q2N123_9METZ)

HSP 1 Score: 138 bits (347), Expect = 1.070e-36
Identity = 66/119 (55.46%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    1 IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNALGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYTTEQALTYMGQKMRAPKAGA 357
            I EQLSKNR+I+E D KG  +  + SSTHERK+R ++ VK+ K+Y+K N   DDVP+V+V KAMGMESDQEIVQ++G+E E+++ FA SLEEA + +++T++QAL YMG  +R  + GA
Sbjct:  137 IQEQLSKNRMIVETDRKGMVTCTVASSTHERKSRTSLIVKHQKLYIKHNTFTDDVPVVVVFKAMGMESDQEIVQMIGTEEELMAGFAPSLEEAASKNIFTSQQALEYMGSLVRQRQWGA 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL54_ECTSI5.180e-5070.49DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE2.860e-4571.31DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA4.670e-4270.09DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3H3I2_9STRA1.030e-4065.79DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WH87_9STRA2.630e-4066.67DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A7S0RSE3_9CHLO1.820e-3752.14DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyr... [more]
A0A7S4QYU8_9STRA6.210e-3763.56DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]
A0A2P4YK15_9STRA8.340e-3760.83DNA-directed RNA polymerase (Fragment) n=2 Tax=Phy... [more]
A0A7S4I9T1_9STRA8.490e-3761.40DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
Q2N123_9METZ1.070e-3655.46DNA-directed RNA polymerase (Fragment) n=1 Tax=Leu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5467contigP-wetherbeei_contig5467:1127..2025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL54
Preferred namePOLR3B
PFAMsRNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_4,RNA_pol_Rpb2_5,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size381
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons3
Evalue8.49e-51
EggNOG OGsCOG0085@1|root,KOG0215@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase Rpb2, domain 2
Ec32 orthologEc-00_002530.1
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size381
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.3238912-CDS-P-wetherbeei_contig5467:1126..12191683186816.3238912-CDS-P-wetherbeei_contig5467:1126..1219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5467 1127..1219 -
1683186816.3389974-CDS-P-wetherbeei_contig5467:1474..16081683186816.3389974-CDS-P-wetherbeei_contig5467:1474..1608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5467 1475..1608 -
1683186816.3509724-CDS-P-wetherbeei_contig5467:1871..20251683186816.3509724-CDS-P-wetherbeei_contig5467:1871..2025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5467 1872..2025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5467.1.1prot_P-wetherbeei_contig5467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5467 1127..2025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5467.1.1

>prot_P-wetherbeei_contig5467.1.1 ID=prot_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
IHEQLSKNRVIIELDAKGCPSAAITSSTHERKTRCNIYVKNGKVYLKQNA
LGDDVPIVIVLKAMGMESDQEIVQLVGSEPEIVSAFAASLEEAITSHVYT
TEQALTYMGQKMRAPKAGARARLPQQT
back to top

mRNA from alignment at P-wetherbeei_contig5467:1127..2025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5467.1.1 ID=mRNA_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=899bp|location=Sequence derived from alignment at P-wetherbeei_contig5467:1127..2025- (Phaeothamnion wetherbeei SAG_119_79)
ATCCACGAGCAGCTGAGCAAGAACCGCGTCATCATCGAGCTGGACGCCAA GGGCTGCCCGAGCGCCGCCATAACCTCGAGCACGCACGAGCGCAAAACGC GCTGCAACATCTACGTCAAGAATGGCAAGGTCTACCTCAAGCAGAACGCC CTCGGTCAGTCTGTGGAACACGGAACTGAGCATTTTGTGGCCGCTGTAAC GGCTGTAACGGCTATAACCGGGCGTTGCTGTTCTCTCTCGCCATTGTGGA TCTCAGCTGTCGCTTCATTCGATTGGCGCGTGGCACGGCCCATCTGCGTA CTTTTATGTTCTTCTCGTTTTCCGTCAACATTACTGAGAGTATTTCCGGA TATGTCCTGCGCCTTCCTTAGCAATGGTTTCGAATGCCGGGATCCCGAAC GAACCAACCCAGTGCAGGCGATGACGTTCCGATCGTGATCGTGCTGAAGG CGATGGGGATGGAGAGCGACCAGGAGATCGTGCAGCTGGTCGGCTCGGAG CCCGAGATCGTCTCCGCGTTCGCCGCCTCGCTCGAGGAGGCCATCACCAG CGTGAGATATAGCGTAGCGTCAACGAGAAAGAGTTCTACCGCTCTGCTTT GCTGACAGAAAGGCGGCACTTTCTACGTGATTTTGTCAGGAGACCTGTTT GTGCGCTTTACAGAATGCCAGGCCGTTCAGGAAAGGGCTTCTTATCTCAC TCCTTTTTGGGCACGCCCTATGATTCTGTTATTACGCTGCTCGCCCGCTG TTTGTTGCTTCCTCCTTTTGTCCCTTTTCTCCGCCTTTGTTTATCGGGTC TGCCAGCACGTGTACACGACGGAGCAGGCGCTGACGTACATGGGGCAGAA AATGCGGGCCCCCAAGGCTGGGGCGCGTGCGCGGCTGCCGCAGCAGACG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5467:1127..2025-

>mRNA_P-wetherbeei_contig5467.1.1 ID=mRNA_P-wetherbeei_contig5467.1.1|Name=mRNA_P-wetherbeei_contig5467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig5467:1127..2025- (Phaeothamnion wetherbeei SAG_119_79)
ATCCACGAGCAGCTGAGCAAGAACCGCGTCATCATCGAGCTGGACGCCAA
GGGCTGCCCGAGCGCCGCCATAACCTCGAGCACGCACGAGCGCAAAACGC
GCTGCAACATCTACGTCAAGAATGGCAAGGTCTACCTCAAGCAGAACGCC
CTCGGCGATGACGTTCCGATCGTGATCGTGCTGAAGGCGATGGGGATGGA
GAGCGACCAGGAGATCGTGCAGCTGGTCGGCTCGGAGCCCGAGATCGTCT
CCGCGTTCGCCGCCTCGCTCGAGGAGGCCATCACCAGCCACGTGTACACG
ACGGAGCAGGCGCTGACGTACATGGGGCAGAAAATGCGGGCCCCCAAGGC
TGGGGCGCGTGCGCGGCTGCCGCAGCAGACG
back to top