mRNA_P-wetherbeei_contig54312.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54312.1.1
Unique NamemRNA_P-wetherbeei_contig54312.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54312.1.1 vs. uniprot
Match: A0A0Q6RY17_9BURK (OMP_b-brl domain-containing protein n=1 Tax=Massilia sp. Root335 TaxID=1736517 RepID=A0A0Q6RY17_9BURK)

HSP 1 Score: 52.4 bits (124), Expect = 9.980e-6
Identity = 34/111 (30.63%), Postives = 54/111 (48.65%), Query Frame = 1 
Query:    1 YGGYRLSSAFAIEGSQTQFSSSSSGCNGEAIGGDSRSCLGSAWSLSGVATLPFRSGLSLYGRLGLHYWQKGFQEDANSRHNADDPGALGKVYGVGMSYELNKSITVHAESE 333
            YGGY++   + +E   T F   ++G           +  GS   ++G  T+P     S YG+LG+ Y ++ F     +  N  D G  G   GVG+ Y+LN+ + V+AE E
Sbjct:   51 YGGYQVDQNWGVEAGYTDFGKENNGAG---------NVKGSGTYVAGKYTVPLGDRFSGYGKLGVAYNERKFDNGLGTHVNDYDTGLYG---GVGVEYKLNEKLAVNAEYE 149
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BLAST of mRNA_P-wetherbeei_contig54312.1.1 vs. uniprot
Match: A0A5C6ZYQ9_9BURK (Porin n=2 Tax=Mitsuaria sp. TWR114 TaxID=2601731 RepID=A0A5C6ZYQ9_9BURK)

HSP 1 Score: 50.1 bits (118), Expect = 9.590e-5
Identity = 31/116 (26.72%), Postives = 54/116 (46.55%), Query Frame = 1 
Query:    1 YGGYRLSSAFAIEGSQTQFSSSSSGCNGEAIGGDSRSCLGSAWSLSGVATLPFRSGLSLYGRLGLHYWQKGFQEDANSRHNADDPGALGKVYGVGMSYELNKSITVHAESEHISEL 348
            +GGY+ +  FA E S T             +  D  +     ++L G+A  P  +G  +YG++GL Y Q+ F       +   D    G   GVG+ Y L K++++ AE+   +++
Sbjct:   77 FGGYKFNENFAAEISYTDLGK---------VSFDGVTAKNKVYALDGIARAPLGAGFGVYGKVGLAYAQRDFN------NGLGDKDKTGLKLGVGVDYALTKNVSLRAEATRYNDM 177
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54312.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0Q6RY17_9BURK9.980e-630.63OMP_b-brl domain-containing protein n=1 Tax=Massil... [more]
A0A5C6ZYQ9_9BURK9.590e-526.72Porin n=2 Tax=Mitsuaria sp. TWR114 TaxID=2601731 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54312contigP-wetherbeei_contig54312:140..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.8385687-CDS-P-wetherbeei_contig54312:139..5291683186811.8385687-CDS-P-wetherbeei_contig54312:139..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54312 140..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54312.1.1prot_P-wetherbeei_contig54312.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54312 140..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54312.1.1

>prot_P-wetherbeei_contig54312.1.1 ID=prot_P-wetherbeei_contig54312.1.1|Name=mRNA_P-wetherbeei_contig54312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
YGGYRLSSAFAIEGSQTQFSSSSSGCNGEAIGGDSRSCLGSAWSLSGVAT
LPFRSGLSLYGRLGLHYWQKGFQEDANSRHNADDPGALGKVYGVGMSYEL
NKSITVHAESEHISELNGSSLSGTTPGVGL
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mRNA from alignment at P-wetherbeei_contig54312:140..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54312.1.1 ID=mRNA_P-wetherbeei_contig54312.1.1|Name=mRNA_P-wetherbeei_contig54312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig54312:140..529+ (Phaeothamnion wetherbeei SAG_119_79)
TACGGCGGTTATCGCCTCTCCAGCGCCTTCGCCATCGAAGGCTCCCAGAC
CCAGTTCAGTTCAAGTTCGTCCGGCTGCAACGGCGAGGCCATCGGCGGCG
ACAGTCGCTCCTGCCTGGGCTCGGCGTGGAGCCTGTCCGGCGTTGCTACG
CTGCCGTTCCGGTCCGGCCTTTCGCTCTACGGCCGCCTGGGCCTGCACTA
CTGGCAGAAAGGCTTCCAGGAAGACGCTAACAGCCGCCATAACGCGGACG
ATCCTGGCGCCCTCGGCAAGGTTTACGGCGTCGGCATGAGCTACGAATTG
AACAAGTCGATTACCGTGCACGCAGAATCTGAACACATTTCCGAATTGAA
TGGCAGCAGCCTCTCTGGCACCACCCCCGGCGTCGGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54312:140..529+

>mRNA_P-wetherbeei_contig54312.1.1 ID=mRNA_P-wetherbeei_contig54312.1.1|Name=mRNA_P-wetherbeei_contig54312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig54312:140..529+ (Phaeothamnion wetherbeei SAG_119_79)
TACGGCGGTTATCGCCTCTCCAGCGCCTTCGCCATCGAAGGCTCCCAGAC
CCAGTTCAGTTCAAGTTCGTCCGGCTGCAACGGCGAGGCCATCGGCGGCG
ACAGTCGCTCCTGCCTGGGCTCGGCGTGGAGCCTGTCCGGCGTTGCTACG
CTGCCGTTCCGGTCCGGCCTTTCGCTCTACGGCCGCCTGGGCCTGCACTA
CTGGCAGAAAGGCTTCCAGGAAGACGCTAACAGCCGCCATAACGCGGACG
ATCCTGGCGCCCTCGGCAAGGTTTACGGCGTCGGCATGAGCTACGAATTG
AACAAGTCGATTACCGTGCACGCAGAATCTGAACACATTTCCGAATTGAA
TGGCAGCAGCCTCTCTGGCACCACCCCCGGCGTCGGCCTG
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