prot_P-wetherbeei_contig54312.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig54312.1.1
Unique Nameprot_P-wetherbeei_contig54312.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length130
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig54312.1.1 vs. uniprot
Match: A0A0Q6RY17_9BURK (OMP_b-brl domain-containing protein n=1 Tax=Massilia sp. Root335 TaxID=1736517 RepID=A0A0Q6RY17_9BURK)

HSP 1 Score: 52.4 bits (124), Expect = 9.980e-6
Identity = 34/111 (30.63%), Postives = 54/111 (48.65%), Query Frame = 0 
Query:    1 YGGYRLSSAFAIEGSQTQFSSSSSGCNGEAIGGDSRSCLGSAWSLSGVATLPFRSGLSLYGRLGLHYWQKGFQEDANSRHNADDPGALGKVYGVGMSYELNKSITVHAESE 111
            YGGY++   + +E   T F   ++G           +  GS   ++G  T+P     S YG+LG+ Y ++ F     +  N  D G  G   GVG+ Y+LN+ + V+AE E
Sbjct:   51 YGGYQVDQNWGVEAGYTDFGKENNGAG---------NVKGSGTYVAGKYTVPLGDRFSGYGKLGVAYNERKFDNGLGTHVNDYDTGLYG---GVGVEYKLNEKLAVNAEYE 149
[Close]
BLAST of mRNA_P-wetherbeei_contig54312.1.1 vs. uniprot
Match: A0A5C6ZYQ9_9BURK (Porin n=2 Tax=Mitsuaria sp. TWR114 TaxID=2601731 RepID=A0A5C6ZYQ9_9BURK)

HSP 1 Score: 50.1 bits (118), Expect = 9.590e-5
Identity = 31/116 (26.72%), Postives = 54/116 (46.55%), Query Frame = 0 
Query:    1 YGGYRLSSAFAIEGSQTQFSSSSSGCNGEAIGGDSRSCLGSAWSLSGVATLPFRSGLSLYGRLGLHYWQKGFQEDANSRHNADDPGALGKVYGVGMSYELNKSITVHAESEHISEL 116
            +GGY+ +  FA E S T             +  D  +     ++L G+A  P  +G  +YG++GL Y Q+ F       +   D    G   GVG+ Y L K++++ AE+   +++
Sbjct:   77 FGGYKFNENFAAEISYTDLGK---------VSFDGVTAKNKVYALDGIARAPLGAGFGVYGKVGLAYAQRDFN------NGLGDKDKTGLKLGVGVDYALTKNVSLRAEATRYNDM 177
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54312.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0Q6RY17_9BURK9.980e-630.63OMP_b-brl domain-containing protein n=1 Tax=Massil... [more]
A0A5C6ZYQ9_9BURK9.590e-526.72Porin n=2 Tax=Mitsuaria sp. TWR114 TaxID=2601731 R... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000498Outer membrane protein OmpA-like, transmembrane domainPFAMPF01389OmpA_membranecoord: 42..117
e-value: 3.6E-7
score: 30.1
NoneNo IPR availableGENE3D2.40.160.20coord: 1..130
e-value: 4.6E-17
score: 64.0
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelSUPERFAMILY56925OMPA-likecoord: 1..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54312contigP-wetherbeei_contig54312:140..529 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54312.1.1mRNA_P-wetherbeei_contig54312.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig54312 140..529 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig54312.1.1 ID=prot_P-wetherbeei_contig54312.1.1|Name=mRNA_P-wetherbeei_contig54312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
YGGYRLSSAFAIEGSQTQFSSSSSGCNGEAIGGDSRSCLGSAWSLSGVAT
LPFRSGLSLYGRLGLHYWQKGFQEDANSRHNADDPGALGKVYGVGMSYEL
NKSITVHAESEHISELNGSSLSGTTPGVGL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000498OmpA-like_TM_dom
IPR011250OMP/PagP_b-brl