mRNA_P-wetherbeei_contig54151.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54151.1.1
Unique NamemRNA_P-wetherbeei_contig54151.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A7C4TT92_9HYPH (Twin-arginine translocation signal domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TT92_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 2.840e-17
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   25 VDRRGFLRSIGGASVAGAAVAVGAAPPAEAAESDADKKKTRYQESDHVKAYYRTNRY 195
            VDRRGFL+SIGG  VA A VA   + P EAAES+ADK+K RY+E+DHVKAYYRTNRY
Sbjct:   10 VDRRGFLKSIGGVGVAAATVAGLGSAPVEAAESEADKRKARYRETDHVKAYYRTNRY 66          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A858R7D3_9PROT (Formate dehydrogenase n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858R7D3_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 6.750e-12
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   31 RRGFLRSIGGASVAGAAVAVG--AAPPAEAAESDADKKKTRYQESDHVKAYYRTNRY 195
            RRGFLR +G  + AGAAVAV   AA PAEA ES+AD+ K RY+E+DHVK YYRTNRY
Sbjct:   15 RRGFLRVLG-TTAAGAAVAVPLVAAGPAEAKESEADRVKARYKETDHVKTYYRTNRY 70          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A833L7A3_9HYPH (Uncharacterized protein n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A833L7A3_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 5.530e-11
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   16 RSSVD--RRGFLRS-IGGASVAGAAVAVGAAPPAEAAESDADKKKTRYQESDHVKAYYRTNRY 195
            R+ VD  RR FLR+ + GASVA AA    A  P +AAESDADKKK RY+E+DHVK YY TNRY
Sbjct:    9 RTGVDASRRTFLRAGLAGASVAAAATGA-AVTPVQAAESDADKKKARYKETDHVKKYYATNRY 70          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A3Q8XQU2_9HYPH (Uncharacterized protein n=2 Tax=Georhizobium profundi TaxID=2341112 RepID=A0A3Q8XQU2_9HYPH)

HSP 1 Score: 60.8 bits (146), Expect = 7.470e-11
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 TSKSNRSSVDRRGFLRSIGGASVAGAAVAVGAAPPAEAA--ESDADKKKTRYQESDHVKAYYRTNRY 195
            T + ++  + RRGFL +  G   A AAVAVG     EAA  E+D +K+K RYQE+DHVKA+YRTNRY
Sbjct:    2 TIQDDQKGLGRRGFLGAFAGVGAAAAAVAVGTGGVQEAAAQEADDEKRKARYQETDHVKAFYRTNRY 68          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: UPI00166DD52E (twin-arginine translocation signal domain-containing protein n=2 Tax=Salinarimonas TaxID=690086 RepID=UPI00166DD52E)

HSP 1 Score: 58.5 bits (140), Expect = 6.740e-10
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    7 KSNRSSVDRRGFLRSIGGASVAGAAVAVG--AAPPAEAAESDADKKKTRYQESDHVKAYYRTNRY 195
            +S + ++DRRGFLR++GGA    AAVAV   A   A+A+E+  +K K RYQE+ HV+A+YRTNRY
Sbjct:    8 ESAKVALDRRGFLRAVGGAGSLAAAVAVSPLAGSEAQASETADEKVKARYQETAHVQAFYRTNRY 72          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: UPI000DF1B338 (twin-arginine translocation signal domain-containing protein n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF1B338)

HSP 1 Score: 58.2 bits (139), Expect = 1.000e-9
Identity = 35/61 (57.38%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   19 SSVDRRGFLRSIGGASVAGAAVAVG--AAPPAEAAESDADKKKTRYQESDHVKAYYRTNRY 195
            S ++RR FLR++G ++ AGAAVA    AA PA+A E+ A++ K RY+E++HVKAYYRTNRY
Sbjct:   15 SGLERRDFLRALG-STAAGAAVAAPLLAAGPAQAKETGAERTKARYRETEHVKAYYRTNRY 74          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A508TBC6_9BRAD (UCR_Fe-S_N domain-containing protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TBC6_9BRAD)

HSP 1 Score: 57.8 bits (138), Expect = 1.260e-9
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 RSSVDRRGFLRSIGGASV-AGAAVAVGAAPPAEA-AESDADKKKTRYQESDHVKAYYRTNRY 195
            +++V RR FLR++G  +V AGA +A     PA+A +E+DA+K+K RY+E+DHVKAYYR NRY
Sbjct:    6 KTTVGRRDFLRTVGVGTVGAGATLATPLITPAQADSENDAEKRKARYKETDHVKAYYRVNRY 67          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A849IAB1_9HYPH (Formate dehydrogenase n=1 Tax=Enterovirga sp. DB1703 TaxID=2730920 RepID=A0A849IAB1_9HYPH)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-9
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    4 SKSNRSSVDRRGFLRSIGGASVAGAAVAVG--AAPPAEAAESDADKKKTRYQESDHVKAYYRTNRY 195
            S+S+R +VDRR FL ++GGAS A   VAV   AA  A+A +   ++ K RY+ESDHVKA+YRTN Y
Sbjct:    2 SESDRKAVDRRKFLGAVGGASSAAVVVAVSPIAATEAQAYDPGPNETKARYRESDHVKAFYRTNGY 67          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A1M5Q7W4_9BRAD (Formate dehydrogenase region TAT target n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5Q7W4_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 1.790e-9
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   16 RSSVDRRGFLRSIG-GASVAGAAVAVGAAPPAEA-AESDADKKKTRYQESDHVKAYYRTNRY 195
            +++VDRR FLR +G GA  AGA +A     PA A +E+D +K+K RY+E+DHVKAYYR NRY
Sbjct:    6 KATVDRRDFLRKVGVGAVGAGATLASPLIAPARADSENDDEKRKVRYKETDHVKAYYRVNRY 67          
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Match: A0A1W9K829_9PROT (Uncharacterized protein n=2 Tax=unclassified Proteobacteria TaxID=81684 RepID=A0A1W9K829_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 3.280e-9
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   28 DRRGFLRSIGGASVAGAAVAVGAAPPAEA--AESDADKKKTRYQESDHVKAYYRTNRY 195
            DRR FL+++     AGA+   G A P EA  AES +DK+K RY+E+DHVKA+YRTNRY
Sbjct:    9 DRRSFLKALS-VGAAGASAVAGLATPVEAVAAESASDKRKKRYRETDHVKAFYRTNRY 65          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54151.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TT92_9HYPH2.840e-1771.93Twin-arginine translocation signal domain-containi... [more]
A0A858R7D3_9PROT6.750e-1268.42Formate dehydrogenase n=1 Tax=Rhodospirillaceae ba... [more]
A0A833L7A3_9HYPH5.530e-1163.49Uncharacterized protein n=1 Tax=Beijerinckiaceae b... [more]
A0A3Q8XQU2_9HYPH7.470e-1153.73Uncharacterized protein n=2 Tax=Georhizobium profu... [more]
UPI00166DD52E6.740e-1053.85twin-arginine translocation signal domain-containi... [more]
UPI000DF1B3381.000e-957.38twin-arginine translocation signal domain-containi... [more]
A0A508TBC6_9BRAD1.260e-954.84UCR_Fe-S_N domain-containing protein n=2 Tax=Brady... [more]
A0A849IAB1_9HYPH1.360e-954.55Formate dehydrogenase n=1 Tax=Enterovirga sp. DB17... [more]
A0A1M5Q7W4_9BRAD1.790e-956.45Formate dehydrogenase region TAT target n=1 Tax=Br... [more]
A0A1W9K829_9PROT3.280e-956.90Uncharacterized protein n=2 Tax=unclassified Prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54151contigP-wetherbeei_contig54151:283..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123229.AUBC01000003_gene2130
Model size198
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.35e-11
EggNOG OGs2EH97@1|root,33B11@2|Bacteria,1MZP0@1224|Proteobacteria,2UBWB@28211|Alphaproteobacteria
DescriptionTIGRFAM formate dehydrogenase region TAT target
Cds size198
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.3339143-CDS-P-wetherbeei_contig54151:282..4801683186809.3339143-CDS-P-wetherbeei_contig54151:282..480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54151 283..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54151.1.1prot_P-wetherbeei_contig54151.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54151 283..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54151.1.1

>prot_P-wetherbeei_contig54151.1.1 ID=prot_P-wetherbeei_contig54151.1.1|Name=mRNA_P-wetherbeei_contig54151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
TSKSNRSSVDRRGFLRSIGGASVAGAAVAVGAAPPAEAAESDADKKKTRY
QESDHVKAYYRTNRY*
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mRNA from alignment at P-wetherbeei_contig54151:283..480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54151.1.1 ID=mRNA_P-wetherbeei_contig54151.1.1|Name=mRNA_P-wetherbeei_contig54151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig54151:283..480- (Phaeothamnion wetherbeei SAG_119_79)
ACGTCCAAATCCAATCGGTCAAGCGTCGACAGGCGCGGGTTCCTGCGCTC GATTGGCGGGGCGAGCGTTGCCGGTGCTGCGGTGGCTGTGGGCGCCGCAC CGCCTGCCGAAGCGGCAGAGAGCGACGCCGACAAGAAAAAGACGCGCTAC CAGGAAAGCGATCACGTCAAAGCTTACTACCGCACCAACCGCTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54151:283..480-

>mRNA_P-wetherbeei_contig54151.1.1 ID=mRNA_P-wetherbeei_contig54151.1.1|Name=mRNA_P-wetherbeei_contig54151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig54151:283..480- (Phaeothamnion wetherbeei SAG_119_79)
ACGTCCAAATCCAATCGGTCAAGCGTCGACAGGCGCGGGTTCCTGCGCTC
GATTGGCGGGGCGAGCGTTGCCGGTGCTGCGGTGGCTGTGGGCGCCGCAC
CGCCTGCCGAAGCGGCAGAGAGCGACGCCGACAAGAAAAAGACGCGCTAC
CAGGAAAGCGATCACGTCAAAGCTTACTACCGCACCAACCGCTACTGA
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