mRNA_P-wetherbeei_contig541.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig541.4.1
Unique NamemRNA_P-wetherbeei_contig541.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig541.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig541contigP-wetherbeei_contig541:7525..9661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4098.XP_009600965.1
PFAMsPPR,PPR_2,PPR_3
Model size1231
Max annot lvl35493|Streptophyta
KEGG koko:K17964
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Exons5
Evalue0.000291
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37I70@33090|Viridiplantae,3G7VU@35493|Streptophyta,44PES@71274|asterids
DescriptionPentatricopeptide repeat-containing protein
Cds size1146
COG categoryS
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig541.4.1prot_P-wetherbeei_contig541.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig541 7525..9417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.5343273-CDS-P-wetherbeei_contig541:7524..77431683186808.5343273-CDS-P-wetherbeei_contig541:7524..7743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig541 7525..7743 -
1683186808.5596542-CDS-P-wetherbeei_contig541:7945..81741683186808.5596542-CDS-P-wetherbeei_contig541:7945..8174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig541 7946..8174 -
1683186808.5717273-CDS-P-wetherbeei_contig541:8458..85951683186808.5717273-CDS-P-wetherbeei_contig541:8458..8595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig541 8459..8595 -
1683186808.5820868-CDS-P-wetherbeei_contig541:8856..94171683186808.5820868-CDS-P-wetherbeei_contig541:8856..9417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig541 8857..9417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.5922687-UTR-P-wetherbeei_contig541:9417..94281683186808.5922687-UTR-P-wetherbeei_contig541:9417..9428Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig541 9418..9428 -
1683186808.6163256-UTR-P-wetherbeei_contig541:9588..96611683186808.6163256-UTR-P-wetherbeei_contig541:9588..9661Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig541 9589..9661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig541.4.1

>prot_P-wetherbeei_contig541.4.1 ID=prot_P-wetherbeei_contig541.4.1|Name=mRNA_P-wetherbeei_contig541.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=382bp
MWFLGLRPNHTSYSCAISACARADRGDEALSLLREMPQLGLRPDRRCYAA
AMSALARLGRWEPCLQLLMEARAAAAGGSGVAGVTSGGGGASGIAGGSGG
KGGSVTIGRGSAATSPGGGGGGGVAGAVGGGGRGVAGAVGDGGSGGGSHS
GPVGAAAASEGMRVIHNAAIHACANAGNWRLSLELLDEMGRNGIRPDLTS
YNAALHGLARGGETARALTLLEAMRSGSVPPDRISYNCCITACSRSGDGD
GALRLVASMAADGIAPDPQTRHATMNALVAAGAWRRAVHLFEKAPPRERD
VFSYNIAAKALAQGGEVDRIVSLMDDMIAAGLEPDGATYGAALRACGVAV
TTAATATKATRAPEAPALEKSARSHGGKCQSA
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mRNA from alignment at P-wetherbeei_contig541:7525..9661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig541.4.1 ID=mRNA_P-wetherbeei_contig541.4.1|Name=mRNA_P-wetherbeei_contig541.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2137bp|location=Sequence derived from alignment at P-wetherbeei_contig541:7525..9661- (Phaeothamnion wetherbeei SAG_119_79)
GATCAGCGTAAACTCGGCGATCCAAGCGTGTTCACGGCGTGGTATGTGGC
GCCAGGCGGCGTCTCTGCTGCAGGCAAGCTGATTTCCCCCCGAGGCCGGT
TTTACCGCATCATCGCCATCATCTGCCGCCTGCTAGACTTTTCCATTCCC
CTCTCTCACCTCCTGTTCATTTGCCGTTCTTTATTTCCCTTTTTGCGCGC
CCTGACTTTGCCGCGGTTTTTTCGCCCTGCAAGAATTCTAGGGCATGTGG
TTTCTGGGGCTGCGGCCGAATCACACCTCTTACAGCTGCGCCATCTCAGC
CTGCGCTCGCGCCGACCGCGGCGACGAGGCGCTCTCGCTACTGCGGGAGA
TGCCGCAGCTTGGACTCCGACCGGACCGCCGCTGCTATGCCGCCGCTATG
TCTGCTTTGGCCCGCCTCGGCCGCTGGGAGCCCTGCTTGCAGCTGCTGAT
GGAGGCGCGGGCGGCCGCCGCCGGCGGAAGTGGCGTCGCCGGCGTTACTT
CCGGCGGCGGCGGTGCTAGTGGTATTGCAGGTGGCAGCGGCGGCAAGGGG
GGCAGCGTCACCATTGGGCGCGGCAGCGCTGCAACGTCTCCAGGCGGTGG
CGGCGGTGGGGGTGTCGCCGGCGCTGTTGGCGGAGGTGGTAGGGGTGTCG
CAGGCGCTGTTGGTGACGGCGGTAGCGGCGGGGGGAGCCACTCCGGTCCG
GTGGGGGCGGCGGCGGCCTCCGAGGGCATGCGGGTGATTCACAACGCCGC
AATTCACGCCTGCGCCAACGCCGGCAACTGGCGGCTCTCCCTTGAGCTCC
TGGATGTGAGGGACGGCCGAAAGATTGGGCGATTGCGGCTCTTGTTTCTG
ATATTTGGCTGTCAGCCTTTTTAAGGGCCGATTCGTAGGCGCTGCCGAAG
CAGCGGTCAACTTGGAAGAGGCTTGTGGCCACCGACGACGTATCACATCT
TGAAATTACGTGTTTTGTTGTGCTACGTCCCTCTGGGCACTCACATCCAA
ATGTGCAAGATGGGGGCTGGCTGATTGTGTGCGGGATCCTATTTCTGCTG
CTTTCTCGCCGAGCAGGAGATGGGGCGGAACGGGATCCGTCCGGACTTGA
CGAGCTACAACGCGGCCCTCCACGGGCTGGCGCGGGGTGGCGAGACAGCC
CGCGCGCTCACTCTGCTGGAGGCGATGCGGAGCGGCAGCGTCCCGCCCGA
CAGGTCCGTTTTTCGTCCGGTCTTTCGCTATTTCGTTCTTTCTGTCGATC
GGGCGCTTCATGCAGCCCCATCCTTGTATAAACGAAGCTGGTGTGATTTC
GGCACAGGATGAGGGGTGGGCGGAAGTCAATAGTCCATGACGGCTGCCGG
TGGATCTATCGCTTCAGCTGTTTCACAGTTCCTTTGCTCCGCTGCTCTGA
TGCATTGTCGGAATGCCCGCTGCATCTCCAATTTTGCGCTCATCTGTCAT
GCGTCTGTTGTATCATGCGCTCGGTCGCGACCTTTAGGATTTCGTACAAC
TGCTGCATCACGGCATGCTCTCGCAGCGGCGATGGCGATGGCGCTCTGCG
GCTGGTGGCGTCGATGGCCGCCGACGGCATCGCCCCTGACCCCCAGACCC
GCCATGCCACCATGAACGCGCTTGTGGCGGCCGGGGCGTGGCGCCGCGCT
GTCCACCTTTTCGAGAAGGCGCCGCCGCGGGAGCGAGACGTCTTCTCGTA
TAACATCGCCGCCAAGGTGCGACCCTGCTCGTTATGAGTTTTCTCGTGGT
CCTACTATTTTGTCACGTTGGGTTGATCTCATTCGTTGGATGTGCGGTGC
GTGTCATCTCGGTACCGTTTTGTTCTGTCGTCTGTCACTGCAATGAAGGA
GACTTGGAACTAGAGGATGCTTTCTAAGTGCGCCTTCACCCTCTCTCTTT
CCCTGCCTTTCCTCGCAGGCGTTGGCACAGGGCGGTGAGGTGGACCGCAT
TGTGTCCTTAATGGACGACATGATCGCCGCCGGACTAGAGCCGGACGGCG
CTACCTACGGCGCGGCGCTCCGCGCCTGCGGCGTCGCGGTTACGACCGCC
GCGACGGCGACGAAGGCGACCAGGGCGCCGGAGGCGCCGGCGCTGGAAAA
ATCGGCCAGGAGCCACGGCGGCAAATGCCAGAGCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig541:7525..9661-

>mRNA_P-wetherbeei_contig541.4.1 ID=mRNA_P-wetherbeei_contig541.4.1|Name=mRNA_P-wetherbeei_contig541.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1146bp|location=Sequence derived from alignment at P-wetherbeei_contig541:7525..9661- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGTTTCTGGGGCTGCGGCCGAATCACACCTCTTACAGCTGCGCCAT
CTCAGCCTGCGCTCGCGCCGACCGCGGCGACGAGGCGCTCTCGCTACTGC
GGGAGATGCCGCAGCTTGGACTCCGACCGGACCGCCGCTGCTATGCCGCC
GCTATGTCTGCTTTGGCCCGCCTCGGCCGCTGGGAGCCCTGCTTGCAGCT
GCTGATGGAGGCGCGGGCGGCCGCCGCCGGCGGAAGTGGCGTCGCCGGCG
TTACTTCCGGCGGCGGCGGTGCTAGTGGTATTGCAGGTGGCAGCGGCGGC
AAGGGGGGCAGCGTCACCATTGGGCGCGGCAGCGCTGCAACGTCTCCAGG
CGGTGGCGGCGGTGGGGGTGTCGCCGGCGCTGTTGGCGGAGGTGGTAGGG
GTGTCGCAGGCGCTGTTGGTGACGGCGGTAGCGGCGGGGGGAGCCACTCC
GGTCCGGTGGGGGCGGCGGCGGCCTCCGAGGGCATGCGGGTGATTCACAA
CGCCGCAATTCACGCCTGCGCCAACGCCGGCAACTGGCGGCTCTCCCTTG
AGCTCCTGGATGAGATGGGGCGGAACGGGATCCGTCCGGACTTGACGAGC
TACAACGCGGCCCTCCACGGGCTGGCGCGGGGTGGCGAGACAGCCCGCGC
GCTCACTCTGCTGGAGGCGATGCGGAGCGGCAGCGTCCCGCCCGACAGGA
TTTCGTACAACTGCTGCATCACGGCATGCTCTCGCAGCGGCGATGGCGAT
GGCGCTCTGCGGCTGGTGGCGTCGATGGCCGCCGACGGCATCGCCCCTGA
CCCCCAGACCCGCCATGCCACCATGAACGCGCTTGTGGCGGCCGGGGCGT
GGCGCCGCGCTGTCCACCTTTTCGAGAAGGCGCCGCCGCGGGAGCGAGAC
GTCTTCTCGTATAACATCGCCGCCAAGGCGTTGGCACAGGGCGGTGAGGT
GGACCGCATTGTGTCCTTAATGGACGACATGATCGCCGCCGGACTAGAGC
CGGACGGCGCTACCTACGGCGCGGCGCTCCGCGCCTGCGGCGTCGCGGTT
ACGACCGCCGCGACGGCGACGAAGGCGACCAGGGCGCCGGAGGCGCCGGC
GCTGGAAAAATCGGCCAGGAGCCACGGCGGCAAATGCCAGAGCGCT
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