mRNA_P-wetherbeei_contig5407.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5407.1.1
Unique NamemRNA_P-wetherbeei_contig5407.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: D7G9C4_ECTSI (MIP family channel protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9C4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.120e-29
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPKRPEPPQWHDTYA-KAVQEPTATRNAYIS 288
            FGMAFF AI MFGHISA VNPAML+AKA +G + W+ A  L++A+ +G ++G   VYG+YFAHFS+VP+RP PP+W D +   +   PT TRNAYIS
Sbjct:   34 FGMAFFLAISMFGHISANVNPAMLVAKAFLGRLAWKDALALSVANILGGFLGGVVVYGLYFAHFSIVPERPSPPRWDDAFVDSSYAPPTHTRNAYIS 130          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: A0A0L0FAG2_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FAG2_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 6.810e-17
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPKRPEPPQWHDTYAKAVQEPTATRNAYIS 288
            FG+AF+ A+  FG +SAT+NP  + AK + G +      VL++A+FIGA+IGAF V+  Y  HFS++P+ P+    +D   +    PT+ R AYIS
Sbjct:    1 FGLAFYVAVASFGSVSATLNPCTMFAKWICGKVTTEEWIVLSVAEFIGAFIGAFLVWLTYLGHFSLIPEVPD----NDEMKQIKLAPTSVREAYIS 92          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: A0A059LR00_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LR00_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-7
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPKRP 213
            FG  F  + +MFGHISA +NPA+ LA  ++G   +     L+ ++ +GA++GA   Y  Y+ HF +VP+ P
Sbjct:   30 FGFPFGVSTIMFGHISAVLNPAVCLAGLVLGKYSFAEFVALSASELLGAFLGALSTYAHYYPHFCLVPQAP 100          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: A0A1J0F964_9PHYC (Aquaglyceroporin n=1 Tax=Only Syngen Nebraska virus 5 TaxID=1917232 RepID=A0A1J0F964_9PHYC)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-7
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPK 207
            FGMAF   I+MFG +SA +NPAM LA  ++  M ++   V    +F+G ++GA   +  YF HF + PK
Sbjct:   48 FGMAFAIPIIMFGFVSAHLNPAMSLALFILDKMDYKEFLVCVAGEFLGMFVGAVLTFVHYFPHFRLFPK 116          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: A0A087SQB7_AUXPR (Putative glycerol uptake facilitator protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SQB7_AUXPR)

HSP 1 Score: 57.0 bits (136), Expect = 2.240e-7
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPKRP 213
            FG+AF    +MFGHISA +NPA  L + + GN+       L+ ++  GA++GA  ++ +Y  HF+VVP+ P
Sbjct:   58 FGLAFGFPTMMFGHISAFLNPAACLFQWVAGNLSVTEFLALSFSELAGAFLGAILLWLIYLPHFNVVPEPP 128          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: A0A3M7KNP2_AUXPR (Glycerol kinase (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KNP2_AUXPR)

HSP 1 Score: 57.0 bits (136), Expect = 2.430e-7
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPKRP 213
            FG+AF    +MFGHISA +NPA  L + + GN+       L+ ++  GA++GA  ++ +Y  HF+VVP+ P
Sbjct: 2251 FGLAFGFPTMMFGHISAFLNPAACLFQWVAGNLSVTEFLALSFSELAGAFLGAILLWLIYLPHFNVVPEPP 2321          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: M1GXH3_9PHYC (Glycerol uptake facilitator protein n=1 Tax=Acanthocystis turfacea Chlorella virus Canal-1 TaxID=1278270 RepID=M1GXH3_9PHYC)

HSP 1 Score: 54.7 bits (130), Expect = 1.380e-6
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVP 204
            FGMAF   +V+FG +SA +NPAM +A  L+G +  + AFV    + IG ++GA  VY ++  HF++ P
Sbjct:  123 FGMAFAIPLVIFGFVSAHLNPAMCIALLLLGKVDAKEAFVSIGGEIIGMFLGAVMVYLLFLPHFNLRP 190          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: E1ZN74_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZN74_CHLVA)

HSP 1 Score: 52.8 bits (125), Expect = 5.660e-6
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVPK 207
            FG++F   I+MFG+ISA +NPA  LA  + G + +     L+ A+F GA++GA  V+  Y  HF  VP+
Sbjct:   57 FGLSFGVVIMMFGYISAHLNPATCLALWVAGKISFTHFLALSGAEFAGAFVGACLVFLHYLPHFKTVPE 125          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: M1H9L8_9PHYC (Glycerol uptake facilitator protein n=1 Tax=Acanthocystis turfacea Chlorella virus MN0810.1 TaxID=1278272 RepID=M1H9L8_9PHYC)

HSP 1 Score: 52.0 bits (123), Expect = 1.080e-5
Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 FGMAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVYFAHFSVVP 204
            FGMAF   I++FG +SA +NPAM +A  ++G +  + A V    + +G ++GA  VY ++  HF++ P
Sbjct:   49 FGMAFAMPIIIFGFVSAHLNPAMCVALLVLGKVDAKEALVSIGGELLGMFLGAIMVYLLFLPHFNIRP 116          
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Match: A0A504YYS1_FASGI (Aquaporin-9 n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YYS1_FASGI)

HSP 1 Score: 49.3 bits (116), Expect = 4.860e-5
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   55 VNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIGAFFVYGVY 180
            +NPAM LA ALVG +PW     + + +  GAYIGA  VYG+Y
Sbjct:   94 INPAMALAMALVGKVPWIAIVPIMLCEVFGAYIGALVVYGIY 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5407.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G9C4_ECTSI1.120e-2958.76MIP family channel protein n=2 Tax=Ectocarpus TaxI... [more]
A0A0L0FAG2_9EUKA6.810e-1742.71Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A059LR00_9CHLO1.160e-739.44Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
A0A1J0F964_9PHYC1.220e-742.03Aquaglyceroporin n=1 Tax=Only Syngen Nebraska viru... [more]
A0A087SQB7_AUXPR2.240e-740.85Putative glycerol uptake facilitator protein n=3 T... [more]
A0A3M7KNP2_AUXPR2.430e-740.85Glycerol kinase (Fragment) n=1 Tax=Auxenochlorella... [more]
M1GXH3_9PHYC1.380e-642.65Glycerol uptake facilitator protein n=1 Tax=Acanth... [more]
E1ZN74_CHLVA5.660e-642.03Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
M1H9L8_9PHYC1.080e-538.24Glycerol uptake facilitator protein n=1 Tax=Acanth... [more]
A0A504YYS1_FASGI4.860e-552.38Aquaporin-9 n=1 Tax=Fasciola gigantica TaxID=46835... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5407contigP-wetherbeei_contig5407:1426..2088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G9C4
PFAMsMIP
Model size288
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue8.14e-29
EggNOG OGs2DTS9@1|root,2S6IG@2759|Eukaryota
DescriptionMajor intrinsic protein
Cds size282
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.22324-UTR-P-wetherbeei_contig5407:1425..14311683186808.22324-UTR-P-wetherbeei_contig5407:1425..1431Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5407 1426..1431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.2327363-CDS-P-wetherbeei_contig5407:1431..14571683186808.2327363-CDS-P-wetherbeei_contig5407:1431..1457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5407 1432..1457 +
1683186808.2410629-CDS-P-wetherbeei_contig5407:1552..16991683186808.2410629-CDS-P-wetherbeei_contig5407:1552..1699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5407 1553..1699 +
1683186808.2494261-CDS-P-wetherbeei_contig5407:1979..20881683186808.2494261-CDS-P-wetherbeei_contig5407:1979..2088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5407 1980..2088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5407.1.1prot_P-wetherbeei_contig5407.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5407 1432..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5407.1.1

>prot_P-wetherbeei_contig5407.1.1 ID=prot_P-wetherbeei_contig5407.1.1|Name=mRNA_P-wetherbeei_contig5407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MAFFSAIVMFGHISATVNPAMLLAKALVGNMPWRTAFVLTIADFIGAYIG
AFFVYGVYFAHFSVVPKRPEPPQWHDTYAKAVQEPTATRNAYIS
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mRNA from alignment at P-wetherbeei_contig5407:1426..2088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5407.1.1 ID=mRNA_P-wetherbeei_contig5407.1.1|Name=mRNA_P-wetherbeei_contig5407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=663bp|location=Sequence derived from alignment at P-wetherbeei_contig5407:1426..2088+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGGAATGGCCTTTTTCAGCGCTATAGTAATGTAGGTCGCTCATTTTTG GCTTGTTTTGGTCCTCCGCCCTCTTCAGCGACGGAAAAAACCAGTTTTTG AACAAAGATATTAATTTCTTTCCGCAGGTTTGGGCACATCTCGGCGACGG TCAATCCGGCGATGCTGCTTGCCAAGGCGCTTGTCGGCAACATGCCCTGG AGGACCGCCTTCGTGCTGACAATCGCCGACTTCATCGGGGCGTACATTGG CGCGTTCTTCGTCTACGGCGTCTAGTGAGTGATGGCGCCGCTGACTGTGT TGCCGCTTTGCCGATGCAGCTTTCGCTGCAAGGCACTTGGTTGAATGATG GTGGAGAGACGAGTGGCTTCTGCAGCCGTTTGGTCTTTCTGAAAGCGTGT GTTATGCCAGACCCGAACTTTCGCGGGATGGCTCAGTTCCGATTCTAAAC CCACACTTCATAGTCCACCCGCCGCTGCCTACCTCTTGCGGTGGATCGAG GTTTGCCTAACATGGCCCCGCCTTTTGCATTATGCACGCTTAACGTACCC GCAGCTTCGCGCACTTCAGCGTGGTGCCGAAGCGGCCCGAGCCGCCGCAG TGGCACGACACCTACGCCAAGGCCGTGCAGGAGCCGACAGCGACACGTAA CGCGTACATCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5407:1426..2088+

>mRNA_P-wetherbeei_contig5407.1.1 ID=mRNA_P-wetherbeei_contig5407.1.1|Name=mRNA_P-wetherbeei_contig5407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig5407:1426..2088+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTTTTCAGCGCTATAGTAATGTTTGGGCACATCTCGGCGACGGT
CAATCCGGCGATGCTGCTTGCCAAGGCGCTTGTCGGCAACATGCCCTGGA
GGACCGCCTTCGTGCTGACAATCGCCGACTTCATCGGGGCGTACATTGGC
GCGTTCTTCGTCTACGGCGTCTACTTCGCGCACTTCAGCGTGGTGCCGAA
GCGGCCCGAGCCGCCGCAGTGGCACGACACCTACGCCAAGGCCGTGCAGG
AGCCGACAGCGACACGTAACGCGTACATCTCG
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