mRNA_P-wetherbeei_contig540.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig540.2.2
Unique NamemRNA_P-wetherbeei_contig540.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A7S4D8V7_HETAK (Triosephosphate isomerase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8V7_HETAK)

HSP 1 Score: 287 bits (734), Expect = 8.780e-86
Identity = 163/270 (60.37%), Postives = 195/270 (72.22%), Query Frame = 3
Query: 1230 RFSAPAMPRLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIVAF 2039
            R     M R P++AGNWK+NP T EEA ALAA VAA        + + +DA   EVVLF   PF+ PV + +    S VK+GAQN Y    GAFTGS S  MV+S G EYVL GHSERR L+R+ + A+  K++  L+AG+K ILC+GE ++EFE GLV+QVC LQL+K L GV+A+ +   V IAYEPVWAIGTGLTATP IAQ VH FIRGW++ +YG AVAD VRIQYGGSVTPETVDELMA PD+DG LVGGASLDA KF RI+ F
Sbjct:   79 RLDLSLMARQPIMAGNWKMNPCTLEEAAALAAGVAA--------NPIENDA---EVVLFPSHPFLVPVMEKIDG--SQVKLGAQNCYTEDKGAFTGSVSTCMVKSIGVEYVLAGHSERRTLFRDDDGAINRKVKKVLSAGMKPILCIGELKDEFEEGLVEQVCALQLAKDLRGVTAEEM-RRVVIAYEPVWAIGTGLTATPEIAQKVHAFIRGWIAGKYGKAVADEVRIQYGGSVTPETVDELMAQPDIDGALVGGASLDAEKFGRIMNF 334          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A7S2XYZ2_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYZ2_9STRA)

HSP 1 Score: 278 bits (712), Expect = 2.800e-83
Identity = 158/292 (54.11%), Postives = 202/292 (69.18%), Query Frame = 3
Query: 1170 ATVYTVASFIERRFAPSRPLRFSAPAM--PRLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIVAF 2039
            A + TV++F     + +  +R S       R+P I GNWK+NP T EEA ALA        GV SG     D S  EV +F P PF+YPV K L    S VK G +  +    GA+TG+ S +M+++ G EYVL GHSERR L++  + A+  K+R  L +G+K +LC+GE+REE+E  L K++C +QL+K LAGVSA+ + + V+IAYEPVWAIGTGLTATP IAQ+VH +IR W++ +YG  VAD VRIQYGGSVTPETVDELMACPD+DG LVGGASLDAAKF+RIV F
Sbjct:   13 AVISTVSAFFGSPLSYTSAMRSSTQLSMADRVPFICGNWKMNPTTLEEAKALAE-------GVKSGC----DGSAAEVAIFTPHPFLYPVGKILDG--STVKYGGETVFFEDKGAYTGAVSASMLKTVGCEYVLAGHSERRVLFKTDDSAISRKVRKILDSGMKPVLCIGESREEYEANLNKEICCIQLAKDLAGVSAEEM-KLVTIAYEPVWAIGTGLTATPEIAQNVHAYIRSWVAGKYGQEVADEVRIQYGGSVTPETVDELMACPDIDGALVGGASLDAAKFSRIVNF 290          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA)

HSP 1 Score: 260 bits (664), Expect = 7.180e-77
Identity = 149/264 (56.44%), Postives = 182/264 (68.94%), Query Frame = 3
Query: 1248 MPRLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIVAF 2039
            M R P+I GNWK+NP     A  LAA VAA   G+    GV       EV +  P PFV PVR AL    S + VGAQNA+    GAFTG+ S  M+ S G EYVL GHSERR +++E    +  K+   L+  ++ ILC+GE++EE+E GL K+VC +QL K LAGV+A+ + + V IAYEPVWAIGTGL ATP +AQSVH +IR WL+ +YG AVAD VRIQYGGSVTPE+VD+LMACPD+DG LVGGASL A KFARI  F
Sbjct:    2 MARTPIITGNWKMNPGDMASAVQLAADVAAQTKGL---EGV-------EVGIIPPYPFVPPVRDALKG--SGITVGAQNAFVEDKGAFTGAVSTTMLLSVGCEYVLCGHSERRTIFKEDNALINSKVLKVLSKNMRPILCIGESKEEYESGLNKEVCAVQLGKNLAGVTAEQM-KDVVIAYEPVWAIGTGLVATPEVAQSVHAYIRSWLAGKYGQAVADDVRIQYGGSVTPESVDDLMACPDIDGALVGGASLVADKFARICRF 252          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA)

HSP 1 Score: 256 bits (653), Expect = 1.250e-74
Identity = 146/262 (55.73%), Postives = 182/262 (69.47%), Query Frame = 3
Query: 1254 RLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIVAF 2039
            R P IAGNWK NP T E A  LA  V+ A          +  AS  +V +  P PF+ PV++ L    S V +GAQ+ Y    GA+TG+ S  M++S GA++VL GHSERRAL+ + ++ V  KL+  LAAGLKAILC+GE ++E+E+G+ K +C LQL+K L GV+ + + E+V+IAYEPVWAIGTGLTATP IAQ VH  IR  L   YG AVAD+V IQYGGSVTPETVDELMA PD+DG LVGGASL   KFARI+ F
Sbjct:   53 RRPFIAGNWKENPDTLEAAIDLAKVVSTA----------SSSASNVDVAVVVPFPFLVPVKETLKG--SNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKLKKVLAAGLKAILCIGETKDEYELGVNKLICGLQLAKGLKGVTKEQM-ENVAIAYEPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYGGSVTPETVDELMAMPDIDGALVGGASLVGEKFARIINF 301          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A7S2UU88_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU88_9STRA)

HSP 1 Score: 252 bits (644), Expect = 3.890e-74
Identity = 140/253 (55.34%), Postives = 180/253 (71.15%), Query Frame = 3
Query: 1272 GNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARI 2030
            GNWK+NP T +EA ALA  V   V           D ++ EV++  P PF+ PV   +    S V++G QNA+    GA+TG+ S  M++S GA+YVL GHSERR L+R+ + ++  K+R  L AGLK ILC+GE +EE++ GLV+ VC LQ+SK LA V+A+ + + V IAYEPVWAIGTGLTATP IAQSVH +IR  +++++G  VA+ VRIQYGGSVTPETVDELMACPD+DG LVGGASL A KF RI
Sbjct:    1 GNWKMNPETLDEAVALAKGVVEQV----------KDGASGEVIVIPPSPFLVPVADIIKG--SGVQLGGQNAFFEDKGAYTGAVSTCMLKSVGAKYVLAGHSERRTLFRDDDSSINRKVRKILEAGLKPILCIGETKEEYDQGLVELVCGLQISKDLADVTAEQMKDIV-IAYEPVWAIGTGLTATPEIAQSVHKYIRSCIAKKFGDEVAEGVRIQYGGSVTPETVDELMACPDIDGALVGGASLVADKFGRI 240          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A835YXR2_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR2_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.260e-72
Identity = 141/260 (54.23%), Postives = 177/260 (68.08%), Query Frame = 3
Query: 1254 RLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIV 2033
            R PLIAGNWK NP T +EA ALA+ VA A             A    VV+  P PF+ PV+ A   A  A+ +G QN Y    GA+TG+ S AM+ S G  YVL GHSERR ++R  ++A+  KLRA L   +  ILC+GE++EE++ GL K VC +QLSK L GV+ + + + + +AYEPVWAIGTGLTATP IAQSVH +IRG+L++ Y   VAD V IQYGGSVTP++VD LMA PD+DG LVGGASLD AKF RI+
Sbjct:   39 RKPLIAGNWKENPCTVQEAEALASEVAEA----------TKQAGDVGVVVIPPYPFLVPVQNA---ASGALMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVLDHNMMPILCIGESKEEYDAGLNKAVCAIQLSKDLKGVTGEEM-KRIVVAYEPVWAIGTGLTATPEIAQSVHDYIRGYLAKMYSREVADEVIIQYGGSVTPDSVDALMAMPDIDGALVGGASLDGAKFGRII 284          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A6S9FXW6_HETAK (Triosephosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FXW6_HETAK)

HSP 1 Score: 246 bits (629), Expect = 3.110e-71
Identity = 136/262 (51.91%), Postives = 180/262 (68.70%), Query Frame = 3
Query: 1254 RLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIVAF 2039
            R P IAGNWK+NP + EEA  LAA VA           +  + +  E+ +FAP PF+YPV K L    S V VGA+  +    GA+TG+ S  MV+S G ++VL GHSERR L+   +D+V  ++   L  G+  ILC+GE++ E++ GL +++C +QL+K L  V+ + + ++V IAYEPVWAIGTGLTATP IAQ+VH  IR W+++++G  +A   RIQYGGSVTPETVDELMACPD+DG LVGGASLDA KFARI  F
Sbjct:   45 RRPFIAGNWKMNPTSLEEAKTLAAKVAE----------LTKENTEVEMAVFAPHPFIYPVAKELEG--SNVVVGAETIFTEDKGAYTGAVSATMVKSMGGKWVLAGHSERRVLFNTDDDSVNRQVLKILNRGMGCILCIGESQAEYDAGLNQEICTVQLAKDLKDVTPEQM-KNVVIAYEPVWAIGTGLTATPEIAQNVHASIRAWVAKKFGEQIAKETRIQYGGSVTPETVDELMACPDIDGALVGGASLDAEKFARICNF 293          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A4S697_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S697_OSTLU)

HSP 1 Score: 244 bits (622), Expect = 5.530e-71
Identity = 141/252 (55.95%), Postives = 169/252 (67.06%), Query Frame = 3
Query: 1266 IAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKF 2021
            +AGNWKLNP T +EA  LAA V AA        G+  + S  EV +  P PF   V + L    S V VGAQN Y   SGAFTG  S  M +S G  +VL+GHSERR L+ E ++    K R  L  G+ A+LC+GE +EE+E G  K+VC  QLS AL+GV AD +++ V IAYEPVWAIGTGLTATPAIAQSVH  IR W    YG +VA +++IQYGGSV PETVDELM  PDVDGCLVGGASL+A +F
Sbjct:    1 MAGNWKLNPKTLDEARTLAALVGAAA----RDGGIGTNKSKTEVFVCPPAPFAAEVARTLEG--SGVAVGAQNIYFEASGAFTGEMSAEMAKSVGCTHVLIGHSERRELFGETDEMTRLKTRKTLDCGMTAVLCIGETKEEYERGEAKKVCNRQLSAALSGVEADEMSK-VIIAYEPVWAIGTGLTATPAIAQSVHAGIRQWFRTNYGESVAAKIQIQYGGSVKPETVDELMQAPDVDGCLVGGASLNAEQF 245          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A7S0QPR2_9CRYP (Triosephosphate isomerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPR2_9CRYP)

HSP 1 Score: 246 bits (627), Expect = 8.720e-71
Identity = 135/274 (49.27%), Postives = 183/274 (66.79%), Query Frame = 3
Query: 1227 LRFSAPAMPRLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIVAFVPE 2048
            +RF      R+P IAGNWK+NP T E+A  LA  VA          G+       +V +F P PF+  VR  L  A   ++VGAQ+ +    GA+TG+ S +M++S G ++VLVGHSERR++++  ++ + G +  AL  GL  ILC+GE +EE+E  L KQ+C + LSK L GV+ + + + V++AYEPVWAIGTGL   P  AQ VH F+R WL+  Y +  A  VRIQYGGSVTPE+VD+LMA PD+DGCLVGGASLD AKFARI+A++P+
Sbjct:   52 VRFELAMSGRVPFIAGNWKMNPETVEQALDLAKTVA----------GLKAKTQA-QVAVFVPHPFIAAVRPILEGA--GIEVGAQSCFAEQRGAYTGATSTSMIKSVGGKHVLVGHSERRSVFKYTDEMINGMVHKALKDGLCPILCIGETKEEYESKLNKQICAVHLSKGLKGVTKEQM-KRVTVAYEPVWAIGTGLVCDPETAQDVHAFVRSWLTSMYDAETAAGVRIQYGGSVTPESVDDLMAKPDIDGCLVGGASLDPAKFARIIAYIPK 311          
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Match: A0A7S0QWG0_9CRYP (Triosephosphate isomerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QWG0_9CRYP)

HSP 1 Score: 244 bits (624), Expect = 2.000e-70
Identity = 141/258 (54.65%), Postives = 177/258 (68.60%), Query Frame = 3
Query: 1266 IAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDASTPEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMVRSAGAEYVLVGHSERRA--LWREAEDAVGGKLRAALAAGLKAILCVGENREEFEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAIAQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCLVGGASLDAAKFARIV 2033
            IAGNWKLNP T +EA ALA+AV      V S S +  D    ++ +  P PF+ PV + +   +  V +GA++ +    GAFTG  S  M++S G +YVLVGHSERR   +  E++  +  K R  L AGL  ILCVGE +EE+++ L K +C LQLSK LAGV+ + +A  V+IAYEPVWAIGTGLTATP IAQ VH +IR WL++ Y  A AD VRIQYGGSVTP+TVD LMACPD+DG LVGGASL A KF RI+
Sbjct:   58 IAGNWKLNPTTLDEAKALASAV------VKSASSITKDM---DICVCCPHPFLAPVAEIVKGTK--VSLGAEDLFTEDKGAFTGGVSVGMLKSVGVKYVLVGHSERRQGNIATESDAVINKKTRKVLDAGLSPILCVGETKEEYQLNLNKAICALQLSKGLAGVTKEEMAR-VTIAYEPVWAIGTGLTATPEIAQEVHAYIRSWLAQMYDKATADTVRIQYGGSVTPDTVDSLMACPDIDGALVGGASLLADKFERII 303          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig540.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D8V7_HETAK8.780e-8660.37Triosephosphate isomerase n=3 Tax=Heterosigma akas... [more]
A0A7S2XYZ2_9STRA2.800e-8354.11Triosephosphate isomerase n=1 Tax=Fibrocapsa japon... [more]
A0A835ZJI0_9STRA7.180e-7756.44Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
A0A4D9CPZ8_9STRA1.250e-7455.73Triosephosphate isomerase n=1 Tax=Nannochloropsis ... [more]
A0A7S2UU88_9STRA3.890e-7455.34Triosephosphate isomerase n=1 Tax=Fibrocapsa japon... [more]
A0A835YXR2_9STRA2.260e-7254.23Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
A0A6S9FXW6_HETAK3.110e-7151.91Triosephosphate isomerase n=1 Tax=Heterosigma akas... [more]
A4S697_OSTLU5.530e-7155.95Uncharacterized protein (Fragment) n=1 Tax=Ostreoc... [more]
A0A7S0QPR2_9CRYP8.720e-7149.27Triosephosphate isomerase n=1 Tax=Cryptomonas curv... [more]
A0A7S0QWG0_9CRYP2.000e-7054.65Triosephosphate isomerase n=1 Tax=Cryptomonas curv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig540contigP-wetherbeei_contig540:1467..6135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog242159.ABO99348
PFAMsSGL,TIM
Model size2671
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorychloroplast
Exons7
Evalue3.87e-73
EggNOG OGsCOG0149@1|root,KOG1643@2759|Eukaryota,37IFK@33090|Viridiplantae,34JCA@3041|Chlorophyta
DescriptionTriosephosphate isomerase
Cds size2091
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig540.2.2prot_P-wetherbeei_contig540.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig540 2009..6097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.0102248-UTR-P-wetherbeei_contig540:1466..20081683186807.0102248-UTR-P-wetherbeei_contig540:1466..2008Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig540 1467..2008 -
1683186807.1060207-UTR-P-wetherbeei_contig540:6097..61351683186807.1060207-UTR-P-wetherbeei_contig540:6097..6135Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig540 6098..6135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.0225031-CDS-P-wetherbeei_contig540:2008..22141683186807.0225031-CDS-P-wetherbeei_contig540:2008..2214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 2009..2214 -
1683186807.0351486-CDS-P-wetherbeei_contig540:2578..27891683186807.0351486-CDS-P-wetherbeei_contig540:2578..2789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 2579..2789 -
1683186807.0549896-CDS-P-wetherbeei_contig540:3131..36851683186807.0549896-CDS-P-wetherbeei_contig540:3131..3685Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 3132..3685 -
1683186807.0651965-CDS-P-wetherbeei_contig540:3851..41731683186807.0651965-CDS-P-wetherbeei_contig540:3851..4173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 3852..4173 -
1683186807.0748312-CDS-P-wetherbeei_contig540:4477..46191683186807.0748312-CDS-P-wetherbeei_contig540:4477..4619Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 4478..4619 -
1683186807.084554-CDS-P-wetherbeei_contig540:4944..54581683186807.084554-CDS-P-wetherbeei_contig540:4944..5458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 4945..5458 -
1683186807.095259-CDS-P-wetherbeei_contig540:5955..60971683186807.095259-CDS-P-wetherbeei_contig540:5955..6097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig540 5956..6097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig540.2.2

>prot_P-wetherbeei_contig540.2.2 ID=prot_P-wetherbeei_contig540.2.2|Name=mRNA_P-wetherbeei_contig540.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=697bp
MRPHCLGIVVLTALRSSAFAPAGWKLASNILSRIRTTPIRSRKRSFAGRL
TPKAAADGGGDDAVGRIRMVTDNRFNDVTYATTVVTAAPPAAGSAPAWPP
LLLVPPVGLGIDRSFYDRFLRAWVAAGVPGEVHAPDLLGTGSCAPLPTRR
DAPLTPAAWAVQLTAYVRERCPGGTAVVLAQGGSCAVALEMAAAAAEAAD
GGDCGIKGIVLCGPPDLSRALPTPAAVARSYGALESIFGLGFYRFARSRL
FLRKFSESVLFADDAQVDEAWVEGCHARGRDFQLRHAVFAVLSGAAQGDY
RFRLPGISVPTLVLGGSDTAKAQGGGGGDGKGAKTAKAGKGAGKNALPKL
LEYTALLEDSEATLLPGWNVVPYEAAEATVYTVASFIERRFAPSRPLRFS
APAMPRLPLIAGNWKLNPATAEEATALAAAVAAAVGGVSSGSGVNDDAST
PEVVLFAPLPFVYPVRKALAAARSAVKVGAQNAYGATSGAFTGSASHAMV
RSAGAEYVLVGHSERRALWREAEDAVGGKLRAALAAGLKAILCVGENREE
FEVGLVKQVCELQLSKALAGVSADSVAESVSIAYEPVWAIGTGLTATPAI
AQSVHLFIRGWLSRRYGSAVADRVRIQYGGSVTPETVDELMACPDVDGCL
VGGASLDAAKFARIVAFVPEAPAVTATAVTSAAPAAAAMAAAAAAA*
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mRNA from alignment at P-wetherbeei_contig540:1467..6135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig540.2.2 ID=mRNA_P-wetherbeei_contig540.2.2|Name=mRNA_P-wetherbeei_contig540.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4669bp|location=Sequence derived from alignment at P-wetherbeei_contig540:1467..6135- (Phaeothamnion wetherbeei SAG_119_79)
TGTGGGGTTAGAGGCGGGGGGTGTTGTGAGCGGAAGCCATGCGCCCGCAC TGCCTCGGCATCGTCGTGCTGACTGCACTGCGGTCCTCCGCCTTTGCGCC GGCTGGCTGGAAGCTCGCATCGAACATCCTTTCGCGAATACGCACGACGC CCATCCGCTCTCGAAAACGCTCTTTTGCCGGTAAGTTCTCTGTGCAACAT CGTGTACAAACCCTTCGAACCGTGCGTATGCTTTTCAAGCTTTTCTTCTT GAACCAAATCGTCAATAAGCGAAACCAGTTTTGTGTTGTAGAGTTTGTCA CGAACCTAGAGCCTTGTCCTATCGCTTTCGCTTCCATGCCTTGTTGCACC CGGCACAGCATTGTGTGTGAAATTCAGCGTGGAGTTGGATCGTCGGCAGT CCAAGAAGTCCTTTTTTAGTCTTGAGCTTTAACCTTCTTACAAAAGTCGT GCTCGCGCGTGAAAGAAAGCTTTTGAGGGGCTAAAACGAGAGACGGATGC GCCGATACAAAGAGGTGGCCGGAATTCGTGTATTTTCATCCGCGTTCTTA CCGCTTGTTACTGGTAGCCCGAGGCCGGTTTTAATGCTTTCTGAATACCT GTGAATTTCTCGTACGAATCGCATCATCCGCGGCATTATCTCAACTTTCG GTATGCTTGATTTTTTTCCACCTGCAGGCCGACTGACGCCCAAAGCGGCT GCCGACGGCGGCGGCGACGATGCTGTGGGCCGAATCCGGATGGTGACGGA TAACCGCTTCAACGACGTCACCTACGCCACAACGGTCGTAACGGCCGCCC CGCCCGCAGCCGGATCCGCCCCGGCGTGGCCTCCGCTGCTGCTCGTGCCC CCCGTCGGCCTTGGCATCGACCGCAGCTTCTACGATCGATTCCTGCGGGC ATGGGTCGCCGCCGGGGTTCCGGGCGAGGTCCACGCGCCGGATCTGCTGG GCACAGGTTCATGCGCACCGCTGCCGACGCGCCGCGACGCGCCGCTGACG CCGGCGGCGTGGGCGGTGCAGCTGACGGCATACGTGCGGGAGCGGTGCCC GGGGGGCACAGCGGTGGTGCTGGCGCAGGGCGGCAGCTGCGCCGTCGCGC TGGAGATGGCGGCGGCAGCGGCGGAGGCCGCGGACGGCGGCGACTGCGGC ATCAAGGGCATCGTCTTGTGCGGGCCGCCCGATCTGAGCAGGTAAGAATA AAGGAGCAGCTCTGCCTTGTCTCCGGTGCGCTGTGCAGCCTTTATTGCTG GGACTGGCTGCATAACTTTTGCGGATTGGTTAAGCTTCTCGTCTTTCTAT TCTGGCTGTTGGGGTCCTGGCGGACGAATGTTATGCGTGACAGCAAGTCA ATAAAGGGGCCGGCAAGGTTGAGAGCGAGGAGCTGCCCTAGAACGCAGTT TCAGCACCGTTTTTTTGGAGCAGCTTTTCTGGGTTTGTCCCCCTGCCAAG CCGGCTCTCGCACAGCTCGCTTTCCTTGCGCTCTGTTCGCTTTGCTGCTG GGCTGCCTCGCTGCAGGGCACTGCCAACGCCGGCTGCCGTTGCACGATCG TACGGAGCGCTCGAGAGCATATTCGGTCTGGGCTTCTACCGCTTCGCGCG GTCACGACTTTTCCTCAGAAAGTTTAGCGAATCCGTCCTCTTCGCCGACG ATGCCCAGGTGCATTAGCACATAAGCCGGATCGGAGGCCGGTTTGGACTA TTTAACTTGATTGGTTCCTCGCGGCTTTTGCCGTGTTTGCAAAGCCGCCA GCCATTATGGAGTCCCAAATCTACCTGCACTGGCGTTGCAGTACAGCACT TGCGGTTCATTACTCAGGATTCAGACTAAAATGGCAGGCTGTTGACATCT CATCGGGATAGAGAGCGATGAAGAGATTTCGAGTACATCACTCCATCACC TTTCCCAGCCATCCTGGCAAAGGTGTCAAAATACCCTTGTCGGTTTCCCG TGCTCGTCGCAGGTGGACGAGGCGTGGGTGGAGGGCTGCCACGCCCGCGG CCGGGACTTTCAGCTCCGCCACGCCGTCTTCGCCGTCCTGAGCGGCGCCG CCCAGGGCGACTACCGCTTCCGCCTCCCGGGCATCTCTGTGCCGACGCTG GTGCTCGGCGGCAGCGATACTGCCAAGGCCCAGGGCGGCGGCGGCGGCGA CGGCAAGGGGGCGAAGACGGCGAAGGCGGGGAAGGGGGCGGGCAAGAACG CGCTGCCAAAGCTGTTAGAGTACACGGCGCTGCTGGAGGACTCGGAGGCC ACCCTGCTTCCAGGGTGGAACGTCGTGCCTTACGGCGAGCAGTTTTTGAC TCGCCTCCCGTTTTCCTCTGTTTCTTCGTCTTTCTCACACCCTTTTCAAC CGTCAGAAACGCGTACAATTCCTTGTCTGCTGTTTTGCCGGTCCCGATAA TCGAGCCGTCCAAGTGTCTTCTGTTCTTCCTATCGTTTGTTGCTTTGCAG AAGCGGCGGAGGCCACGGTCTACACGGTGGCATCGTTCATCGAGCGCCGC TTCGCTCCTTCCCGCCCGCTGCGCTTTTCTGCCCCCGCCATGCCGCGCTT GCCCCTCATCGCCGGCAACTGGAAGCTCAATCCGGCCACGGCCGAGGAAG CCACCGCCCTCGCCGCCGCCGTCGCCGCCGCCGTCGGTGGCGTTTCAAGC GGCAGCGGCGTAAATGATGACGCATCAACGCCGGAAGTGGTGCTGTTCGC ACCGCTTCCGTTTGTCTACCCCGTCCGGAAAGCGCTGGCGGCGGCGCGCT CTGCGGTCAAAGTTGGGGCGCAGAACGCGTACGGGGCGACGAGCGGCGCC TTCACCGGGTCGGCGTCGCACGCCATGGTGCGCAGTGCCGGCGCGGAGTA TGTGCTGGTCGGGCACAGCGAACGACGGGCGCTCTGGCGGGAAGCGGAGG ACGCGGTCGGCGGGAAGTTGCGGGCGGCGCTGGCGGCGGGGCTCAAGGCG ATTCTGTGCGTCGGAGAGAACCGCGAGGAGTTTGAAGTGGGTCTCGTCAA ACAAGTGCGTTGGCTCTGTTCTTTTGTTTTTGGTGGGATTGACGAGATGA TGCTGTCTTCTTTTTTGCACGCATCGATGGTATGTTTGCCTGGTTGCCAC ATTCTCGTTCCCTCCTCTTACCTTCTCCTGCTTACCTACTCTGGTTTAGG TTGTGTGGGTGGACTGGATTTAGAGCTCCGCCCTGCATACCCGAAAGAAA GAAGCATTCACGCTTTCGCATTCGCCTCGTCTTTTCCCATCTTTTGCCCA CCGATCGTGGTTAACCGCTGTTGTTGCCGCCGCCACCGCCGCCGCCCCCG CCGTCGCTATCTGCCTCATCATCATCATCATCATCATCCACATCAGGTAT GCGAATTGCAGCTCTCCAAGGCGCTGGCGGGCGTGTCGGCCGACTCCGTC GCCGAATCTGTTTCCATCGCGTACGAGCCAGTGTGGGCCATCGGCACGGG GCTGACGGCCACTCCAGCCATCGCGCAGAGCGTGCACCTCTTCATCCGGG GCTGGCTCTCGCGGCGGTACGGCTCCGCCGTGGCCGATCGCGTACGAATA CAGTACGGTGAGCAGCGAATGCAGCTTGCGCGATTTGATCCGATTCATAG TTGTTTCGAGTTGGTTTTTGTTTTGTTTGTTTCCTTTCAACTTGGAGAAG CACATGTGCACCGGACAGGCATTAGCTCCGTCGATGCCGCCGGTGCCGCC GCCATTGCCACCGCCACTACAGCCCCCTTTGCTTTTACCGGGCGCACATA TGAAAGCCATAAAGGGTTTCGAAATGCCGCGTTTACCTCGATCTATTTGC CGCGCCGCGCCGTCTCCAGCCACCGCCTCCAAAACATGGGTTCTCGCAGC AGTCGCGCCTTTTGAAAGACCGAAAATATTTCTTACCGATCCACAAACTT CTCTCCATCTGTCTTTTGCAGGGGGTTCGGTGACGCCGGAGACAGTAGAC GAGCTCATGGCGTGCCCCGACGTCGACGGCTGCCTTGTCGGCGGGGCGAG CCTTGACGCCGCCAAGTTCGCGCGGATCGTGGCCTTCGTGCCCGAGGCGC CGGCAGTGACTGCAACCGCAGTGACGTCGGCAGCGCCCGCGGCGGCGGCG ATGGCAGCAGCAGCTGCAGCAGCATAACACGCGGCGGCGATGGCCGCAGC AGCTGCCGCGGCATGACGCGCGGTGGCGGCGGCGGCCGAGAACGAAACGG TGTGTGCATTCCGGCGTGTCAACAGCGGGCATGTGGTTTAACCTGGTTAA TGGAGTAAGGCACCGCTTGCCCCGGCTTGATAATGCGTCATTAGCTTAGT GGGAGCGCCAATGGCGGTGAAGGCGGCCAAATAAGGCCGTTGTGACGGCA AGGGGGCATTGTTCTAACTGCATCCCCTGCCGGCTACAGTTGCCACAGAG GAGGAAGCCTTTCGGCCGTTCAGCAATGGATTGAGAACGGTTAAGTGGAA CGAGAACCGAAGAAACTTAAATAACAATATAAGAGCCACCAGTGCGTGGG GCAGTGTTTTTGATTCCGTGGTCGCCAAGAGTTGAGCGGATTTTTTTGTC CGCAGCCATTCAGGCGGGAGGATGAACAGCAAGCAGTTTCCACTAGTAAC GGCAAGACGCGTGTCCAGAAATCGGAGGAAGGGCGTGTTGACTGCGCTAA ATATAAAGAGTTTCACCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig540:1467..6135-

>mRNA_P-wetherbeei_contig540.2.2 ID=mRNA_P-wetherbeei_contig540.2.2|Name=mRNA_P-wetherbeei_contig540.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2091bp|location=Sequence derived from alignment at P-wetherbeei_contig540:1467..6135- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCGCACTGCCTCGGCATCGTCGTGCTGACTGCACTGCGGTCCTC
CGCCTTTGCGCCGGCTGGCTGGAAGCTCGCATCGAACATCCTTTCGCGAA
TACGCACGACGCCCATCCGCTCTCGAAAACGCTCTTTTGCCGGCCGACTG
ACGCCCAAAGCGGCTGCCGACGGCGGCGGCGACGATGCTGTGGGCCGAAT
CCGGATGGTGACGGATAACCGCTTCAACGACGTCACCTACGCCACAACGG
TCGTAACGGCCGCCCCGCCCGCAGCCGGATCCGCCCCGGCGTGGCCTCCG
CTGCTGCTCGTGCCCCCCGTCGGCCTTGGCATCGACCGCAGCTTCTACGA
TCGATTCCTGCGGGCATGGGTCGCCGCCGGGGTTCCGGGCGAGGTCCACG
CGCCGGATCTGCTGGGCACAGGTTCATGCGCACCGCTGCCGACGCGCCGC
GACGCGCCGCTGACGCCGGCGGCGTGGGCGGTGCAGCTGACGGCATACGT
GCGGGAGCGGTGCCCGGGGGGCACAGCGGTGGTGCTGGCGCAGGGCGGCA
GCTGCGCCGTCGCGCTGGAGATGGCGGCGGCAGCGGCGGAGGCCGCGGAC
GGCGGCGACTGCGGCATCAAGGGCATCGTCTTGTGCGGGCCGCCCGATCT
GAGCAGGGCACTGCCAACGCCGGCTGCCGTTGCACGATCGTACGGAGCGC
TCGAGAGCATATTCGGTCTGGGCTTCTACCGCTTCGCGCGGTCACGACTT
TTCCTCAGAAAGTTTAGCGAATCCGTCCTCTTCGCCGACGATGCCCAGGT
GGACGAGGCGTGGGTGGAGGGCTGCCACGCCCGCGGCCGGGACTTTCAGC
TCCGCCACGCCGTCTTCGCCGTCCTGAGCGGCGCCGCCCAGGGCGACTAC
CGCTTCCGCCTCCCGGGCATCTCTGTGCCGACGCTGGTGCTCGGCGGCAG
CGATACTGCCAAGGCCCAGGGCGGCGGCGGCGGCGACGGCAAGGGGGCGA
AGACGGCGAAGGCGGGGAAGGGGGCGGGCAAGAACGCGCTGCCAAAGCTG
TTAGAGTACACGGCGCTGCTGGAGGACTCGGAGGCCACCCTGCTTCCAGG
GTGGAACGTCGTGCCTTACGAAGCGGCGGAGGCCACGGTCTACACGGTGG
CATCGTTCATCGAGCGCCGCTTCGCTCCTTCCCGCCCGCTGCGCTTTTCT
GCCCCCGCCATGCCGCGCTTGCCCCTCATCGCCGGCAACTGGAAGCTCAA
TCCGGCCACGGCCGAGGAAGCCACCGCCCTCGCCGCCGCCGTCGCCGCCG
CCGTCGGTGGCGTTTCAAGCGGCAGCGGCGTAAATGATGACGCATCAACG
CCGGAAGTGGTGCTGTTCGCACCGCTTCCGTTTGTCTACCCCGTCCGGAA
AGCGCTGGCGGCGGCGCGCTCTGCGGTCAAAGTTGGGGCGCAGAACGCGT
ACGGGGCGACGAGCGGCGCCTTCACCGGGTCGGCGTCGCACGCCATGGTG
CGCAGTGCCGGCGCGGAGTATGTGCTGGTCGGGCACAGCGAACGACGGGC
GCTCTGGCGGGAAGCGGAGGACGCGGTCGGCGGGAAGTTGCGGGCGGCGC
TGGCGGCGGGGCTCAAGGCGATTCTGTGCGTCGGAGAGAACCGCGAGGAG
TTTGAAGTGGGTCTCGTCAAACAAGTATGCGAATTGCAGCTCTCCAAGGC
GCTGGCGGGCGTGTCGGCCGACTCCGTCGCCGAATCTGTTTCCATCGCGT
ACGAGCCAGTGTGGGCCATCGGCACGGGGCTGACGGCCACTCCAGCCATC
GCGCAGAGCGTGCACCTCTTCATCCGGGGCTGGCTCTCGCGGCGGTACGG
CTCCGCCGTGGCCGATCGCGTACGAATACAGTACGGGGGTTCGGTGACGC
CGGAGACAGTAGACGAGCTCATGGCGTGCCCCGACGTCGACGGCTGCCTT
GTCGGCGGGGCGAGCCTTGACGCCGCCAAGTTCGCGCGGATCGTGGCCTT
CGTGCCCGAGGCGCCGGCAGTGACTGCAACCGCAGTGACGTCGGCAGCGC
CCGCGGCGGCGGCGATGGCAGCAGCAGCTGCAGCAGCATAA
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