mRNA_P-wetherbeei_contig53583.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53583.1.1
Unique NamemRNA_P-wetherbeei_contig53583.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A5C8PPM9_9HYPH (PDZ domain-containing protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PPM9_9HYPH)

HSP 1 Score: 254 bits (648), Expect = 3.290e-79
Identity = 125/174 (71.84%), Postives = 148/174 (85.06%), Query Frame = 1
Query:    1 SLSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRATLAEWHATRRRPPGQI 522
            +++G+ILDMR NPGGLLD++I  A LLLD+G +LTT+GRHPDSR TFRSGSGAL+  VPMVA+MNGRSASAAEI+ AALQDRGRA++VGS SYGKGTVQTVV LPN+GELTLTWSRM APSGYAW E+GVLPTVC+A+F    TL+GEL+ RAQ VR T+AEWH  R   P ++
Sbjct:  314 AMAGVILDMRDNPGGLLDRSITTAGLLLDSGTVLTTEGRHPDSRMTFRSGSGALMPRVPMVAVMNGRSASAAEILAAALQDRGRAVVVGSTSYGKGTVQTVVPLPNDGELTLTWSRMLAPSGYAWAEIGVLPTVCSAKFSHSGTLAGELEHRAQEVRRTMAEWHMVRDPTPERV 487          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A5C5TAJ3_9HYPH (PDZ domain-containing protein n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TAJ3_9HYPH)

HSP 1 Score: 250 bits (639), Expect = 7.780e-78
Identity = 125/173 (72.25%), Postives = 143/173 (82.66%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRATLAEWHATRRRPPGQI 522
            ++GIILDMR NPGGLLD++I  A LLLD+G +LTT+GRHPDSR TFRS   ALL  VPMVA+MNGRSASAAEIV AALQDRGRA++VGS SYGKGTVQTVV +PN+GELTLTWSRM APSGYAW E+GVLPTVCTA+F    TL GEL+ RAQ VR T+AEWH  R   P ++
Sbjct:  319 MAGIILDMRDNPGGLLDRSITTASLLLDSGTVLTTEGRHPDSRMTFRSSGTALLARVPMVALMNGRSASAAEIVAAALQDRGRAVVVGSTSYGKGTVQTVVPMPNDGELTLTWSRMLAPSGYAWAEIGVLPTVCTAKFSDSGTLPGELEQRAQEVRRTMAEWHTVRDPTPERV 491          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A521M5A8_9HYPH (PDZ domain-containing protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M5A8_9HYPH)

HSP 1 Score: 203 bits (516), Expect = 8.890e-60
Identity = 101/168 (60.12%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFG--GPDTLSGELDARAQVVRATLAEWHATR 501
            L+G+I+DMRGN GGLLDQA  VAE+ + +G + +T GRHPDSR+T++S +   + ++P+V +MNG SASAAEIV AALQDRGRA++VG+ SYGKGTVQTVVRLPNEGEL LTWSR+ APSGY W+ELGVLP++CTA+ G  G    +  +D+     +A+L  WHA R
Sbjct:  315 LAGLIIDMRGNRGGLLDQAQAVAEVFIGDGTIFSTQGRHPDSRRTYKSAAARKIADLPVVVLMNGGSASAAEIVAAALQDRGRAVVVGTTSYGKGTVQTVVRLPNEGELILTWSRLQAPSGYTWNELGVLPSICTAKAGAAGQAATTSAVDSN----QASLMRWHALR 478          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A1H8Y908_9PROT (Carboxyl-terminal processing protease n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8Y908_9PROT)

HSP 1 Score: 201 bits (510), Expect = 7.710e-59
Identity = 101/167 (60.48%), Postives = 129/167 (77.25%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLS-GELDARAQVVRATLAEWHATR 501
            ++G+I+DMR N GGLLDQA  V+EL ++NG + +T GRHPDSR+T++S +     ++P+V +MNG SASAAEIV AALQDRGRA++VGS SYGKGTVQTVVRL NEGEL LTWSR++APSGY W+ELGVLP VCT++ G    L+ G +D+     + TL  WHA R
Sbjct:  315 MAGVIIDMRSNRGGLLDQAQTVSELFINNGTIFSTSGRHPDSRRTYKSVTSGKTADMPIVVLMNGGSASAAEIVAAALQDRGRAVVVGSTSYGKGTVQTVVRLANEGELILTWSRLNAPSGYTWNELGVLPNVCTSKIGDVGQLNAGSVDSS----QGTLMRWHALR 477          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A1T4KMC4_9HYPH (Carboxyl-terminal processing protease n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4KMC4_9HYPH)

HSP 1 Score: 200 bits (508), Expect = 1.270e-58
Identity = 101/173 (58.38%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRATLAEWHATRRRPPGQI 522
            L GII+DMRGN GGLLDQA  VAEL + +G++ +T GRHPD+ +T+RS S     ++P+V ++NG SASAAEIV AALQDRGRA++VG+ SYGKGTVQTVVRLPN+GEL LTWSR+ APSGY W+ELGV+P +CTA+    D L   L       R+ L  WHA R   P ++
Sbjct:  310 LGGIIIDMRGNRGGLLDQAESVAELFIGDGVIFSTKGRHPDADRTYRSDSHDRASDLPIVVLVNGNSASAAEIVAAALQDRGRAVVVGTTSYGKGTVQTVVRLPNQGELILTWSRLIAPSGYTWNELGVMPNICTAKVPDVDKLGASL---VDGSRSLLQHWHAERHPGPQEV 479          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A537N273_9PROT (PDZ domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N273_9PROT)

HSP 1 Score: 196 bits (498), Expect = 2.340e-57
Identity = 101/166 (60.84%), Postives = 123/166 (74.10%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRATLAEWHATR 501
            L GIILDMR N GGLLDQA  VAE+ + +G++ +T GRHPDS++T+RSGS    E  P+V ++NG SASAAEIV AALQDRGRA +VG+ SYGKGTVQTV+RLPNEGEL LTWSR+ APSGY W+E GV+P +CTA+ G    L+    A     +A L  WHA R
Sbjct:  297 LQGIILDMRSNRGGLLDQAQSVAEVFIGDGVIFSTQGRHPDSQRTYRSGSRRTAE-APLVVLVNGNSASAAEIVAAALQDRGRAAIVGTTSYGKGTVQTVIRLPNEGELILTWSRLLAPSGYTWNEQGVMPNICTAKVGDVAQLA---PASVDANKALLQRWHAER 458          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A1G7VBL0_9PROT (Carboxyl-terminal processing protease n=1 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G7VBL0_9PROT)

HSP 1 Score: 197 bits (500), Expect = 2.840e-57
Identity = 99/173 (57.23%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGE-------LDARAQVVRATLAEWHATR 501
            + G++LDMRGNPGGLLDQA+ V++L L  G ++ T GRHP+SRQ++ +G G L  ++PM  +++GRSASAAEIV AALQD GRA+++G+ SYGKGTVQTV+RLPN+GE+TLTWSR H+PSGYA   LGVLPT+CT+R  G      E       L     VV   LA W ATR
Sbjct:  319 VQGLVLDMRGNPGGLLDQAVAVSDLFLRRGRIVFTRGRHPESRQSYDAGGGDLAHDLPMAVVIDGRSASAAEIVAAALQDAGRAVVIGTTSYGKGTVQTVIRLPNDGEMTLTWSRFHSPSGYALEGLGVLPTLCTSRPDGRAVSEAESAGLLAPLRQGDPVVATRLARWRATR 491          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A0F2RXI8_9PROT (PDZ domain-containing protein n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2RXI8_9PROT)

HSP 1 Score: 196 bits (497), Expect = 3.800e-57
Identity = 91/166 (54.82%), Postives = 128/166 (77.11%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVC-TARFGGPDTLSGELDARAQVVRATLAEWHAT 498
            + G++LD+RGNPGGLLDQA+ V+++ +  G ++TT GRHP++ Q++ + +G ++  +PMV +++GRSASAAEIV AALQD GRA+++GSASYGKGTVQTV+R+PN+GE+TLTWSR H+PSGYA H LGVLPTVC T      D+L   +   +  +   LA+W +T
Sbjct:  286 MRGVLLDLRGNPGGLLDQAVGVSDMFVTQGRIVTTRGRHPEAMQSYSARTGDVINGLPMVVMLDGRSASAAEIVAAALQDSGRAVVIGSASYGKGTVQTVIRMPNDGEMTLTWSRFHSPSGYALHGLGVLPTVCVTEASASADSLLANVALSSNPIATQLAQWRST 451          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A1Q3KEH7_9PROT (PDZ domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3KEH7_9PROT)

HSP 1 Score: 194 bits (493), Expect = 8.100e-57
Identity = 100/167 (59.88%), Postives = 123/167 (73.65%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSGALLEN-VPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRATLAEWHATR 501
            LSG+I+DMR N GGLLDQA  V+E+ + +G + +T GRHPDSR+T++S +G    N +P+V +MNG SASAAEIV AALQDRGRA++VG+ SYGKGTVQTVVRL NEGEL LTWSR+ APSGY W+ELGVLP +CTA+ G    L     A  +     L  WHA R
Sbjct:  264 LSGLIIDMRSNRGGLLDQAQTVSEVFVGDGTIFSTLGRHPDSRRTYKSSTGRSKANDLPIVVLMNGGSASAAEIVAAALQDRGRAVVVGTTSYGKGTVQTVVRLANEGELILTWSRLQAPSGYTWNELGVLPNICTAKVGDAGKLGA---ASMETSHGQLMRWHALR 427          
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Match: A0A6N6ZQF9_9PROT (Carboxyl-terminal processing protease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N6ZQF9_9PROT)

HSP 1 Score: 194 bits (494), Expect = 1.310e-56
Identity = 99/174 (56.90%), Postives = 128/174 (73.56%), Query Frame = 1
Query:    4 LSGIILDMRGNPGGLLDQAI*VAELLLDNGLLLTTDGRHPDSRQTFRSGSG-ALLENVPMVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGELTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRATLAEWHATRRRPPGQI 522
            L GII+DMR N GGLLDQA  V+E+ + +G++ +T+GRHPDS++T+RS +G A    +P+V +MNG SASAAEIV AALQDRGRA+++G+ SYGKGTVQTVVRL NEGEL LTWSR+ APSGY W+ELGVLP +CT++ G  + L     A       +L  WHA R   P ++
Sbjct:  304 LVGIIIDMRSNRGGLLDQAQSVSEVFIADGMIFSTNGRHPDSKRTYRSSNGRATTGQLPIVVLMNGGSASAAEIVAAALQDRGRAVVIGTTSYGKGTVQTVVRLANEGELILTWSRLQAPSGYTWNELGVLPNICTSKVGDANKLGV---ASVDSNHNSLMRWHALRNPTPQEV 474          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53583.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C8PPM9_9HYPH3.290e-7971.84PDZ domain-containing protein n=1 Tax=Vineibacter ... [more]
A0A5C5TAJ3_9HYPH7.780e-7872.25PDZ domain-containing protein n=2 Tax=Reyranella s... [more]
A0A521M5A8_9HYPH8.890e-6060.12PDZ domain-containing protein n=1 Tax=Reyranella s... [more]
A0A1H8Y908_9PROT7.710e-5960.48Carboxyl-terminal processing protease n=4 Tax=Alph... [more]
A0A1T4KMC4_9HYPH1.270e-5858.38Carboxyl-terminal processing protease n=1 Tax=Enhy... [more]
A0A537N273_9PROT2.340e-5760.84PDZ domain-containing protein n=1 Tax=Alphaproteob... [more]
A0A1G7VBL0_9PROT2.840e-5757.23Carboxyl-terminal processing protease n=1 Tax=Rose... [more]
A0A0F2RXI8_9PROT3.800e-5754.82PDZ domain-containing protein n=1 Tax=Rhodospirill... [more]
A0A1Q3KEH7_9PROT8.100e-5759.88PDZ domain-containing protein n=3 Tax=Alphaproteob... [more]
A0A6N6ZQF9_9PROT1.310e-5656.90Carboxyl-terminal processing protease n=2 Tax=Alph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53583contigP-wetherbeei_contig53583:14..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1205680.CAKO01000010_gene3951
PFAMsPDZ,PDZ_2,Peptidase_S41
Model size522
Max annot lvl204441|Rhodospirillales
KEGG koko:K03797
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.83e-36
EggNOG OGsCOG0793@1|root,COG0793@2|Bacteria,1R58Y@1224|Proteobacteria,2U118@28211|Alphaproteobacteria,2JPV1@204441|Rhodospirillales
EC3.4.21.102
DescriptionBelongs to the peptidase S41A family
Cds size345
COG categoryM
BRITEko00000,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.3007374-UTR-P-wetherbeei_contig53583:13..1901683186801.3007374-UTR-P-wetherbeei_contig53583:13..190Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53583 14..190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.310205-CDS-P-wetherbeei_contig53583:190..5351683186801.310205-CDS-P-wetherbeei_contig53583:190..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53583 191..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53583.1.1prot_P-wetherbeei_contig53583.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53583 191..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53583.1.1

>prot_P-wetherbeei_contig53583.1.1 ID=prot_P-wetherbeei_contig53583.1.1|Name=mRNA_P-wetherbeei_contig53583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MVAIMNGRSASAAEIVGAALQDRGRAILVGSASYGKGTVQTVVRLPNEGE
LTLTWSRMHAPSGYAWHELGVLPTVCTARFGGPDTLSGELDARAQVVRAT
LAEWHATRRRPPGQI
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mRNA from alignment at P-wetherbeei_contig53583:14..535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53583.1.1 ID=mRNA_P-wetherbeei_contig53583.1.1|Name=mRNA_P-wetherbeei_contig53583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53583:14..535+ (Phaeothamnion wetherbeei SAG_119_79)
AGTCTCTCGGGCATCATCCTCGACATGCGCGGCAACCCCGGCGGACTGCT CGACCAGGCGATCTAGGTTGCCGAGTTGCTGCTCGACAACGGCCTGTTGC TGACCACCGACGGCCGCCACCCCGACAGCCGGCAGACCTTCCGCTCGGGC AGTGGCGCACTGCTCGAGAACGTGCCCATGGTCGCCATCATGAATGGCCG CTCGGCTTCGGCGGCCGAGATCGTCGGCGCCGCGCTGCAGGATCGCGGCC GCGCGATCCTCGTCGGCAGCGCCTCCTACGGCAAGGGCACGGTGCAAACC GTGGTGCGCCTGCCCAACGAAGGTGAGCTGACCCTGACCTGGTCGCGCAT GCACGCGCCCTCGGGCTATGCCTGGCATGAGCTGGGCGTGCTGCCGACGG TGTGCACGGCCCGCTTCGGCGGGCCCGACACGCTCTCGGGCGAGCTCGAC GCGCGCGCACAGGTCGTGCGTGCGACCTTGGCCGAGTGGCATGCCACCCG GAGGCGGCCGCCGGGGCAAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53583:14..535+

>mRNA_P-wetherbeei_contig53583.1.1 ID=mRNA_P-wetherbeei_contig53583.1.1|Name=mRNA_P-wetherbeei_contig53583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig53583:14..535+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGCCATCATGAATGGCCGCTCGGCTTCGGCGGCCGAGATCGTCGG
CGCCGCGCTGCAGGATCGCGGCCGCGCGATCCTCGTCGGCAGCGCCTCCT
ACGGCAAGGGCACGGTGCAAACCGTGGTGCGCCTGCCCAACGAAGGTGAG
CTGACCCTGACCTGGTCGCGCATGCACGCGCCCTCGGGCTATGCCTGGCA
TGAGCTGGGCGTGCTGCCGACGGTGTGCACGGCCCGCTTCGGCGGGCCCG
ACACGCTCTCGGGCGAGCTCGACGCGCGCGCACAGGTCGTGCGTGCGACC
TTGGCCGAGTGGCATGCCACCCGGAGGCGGCCGCCGGGGCAAATC
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