mRNA_P-wetherbeei_contig5358.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5358.1.1
Unique NamemRNA_P-wetherbeei_contig5358.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: D8LHI2_ECTSI (G-protein coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.410e-16
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  144 IPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVASGQATRRLRQD 386
            IPAQVLSLL ++  G Y TSSV+L+R N+P  HRVAIT  LG ++FSFY RWFD++FL+SGC T + L+A   A R    D
Sbjct:  384 IPAQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFHLANRNSDAD 464          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A6H5JQ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ94_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.580e-16
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  144 IPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVASGQATRRLRQD 386
            IPAQVLSLL ++  G Y TSSV+L+R N+P  HRVAIT  LG ++FSFY RWFD++FL+SGC T + L+A   A R    D
Sbjct:  483 IPAQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFHLANRNSDAD 563          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A260YW31_CAERE (Uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A260YW31_CAERE)

HSP 1 Score: 75.5 bits (184), Expect = 1.110e-11
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 3
Query:   54 FLPVCLSQQPICGRRHAAASVFISFVLRAAIPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
            FL   ++   + G     A  F+S     +  + +++LL+A   G+Y  SSVLL+R NVP+ +R  +T  LGD+KF+FY RWFD IFL+S   ++++L
Sbjct:  200 FLVGVIAVTSVRGLLITMAKFFVSISNSTSSLSNIIALLMAQIMGMYFVSSVLLMRMNVPEEYRTILTRILGDLKFNFYHRWFDVIFLISAVSSIVFL 297          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A8Y3D2_CAEBR (Protein CBG23048 n=9 Tax=Caenorhabditis TaxID=6237 RepID=A8Y3D2_CAEBR)

HSP 1 Score: 75.9 bits (185), Expect = 1.930e-11
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 3
Query:   54 FLPVCLSQQPICGRRHAAASVFISFVLRAAIPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
            FL   ++   I G     A  F+S     +  + +++LL+A   G+Y  SSVLL+R NVP+ +R  +T  LGD+KF+FY RWFD IFL+S   ++++L
Sbjct:  357 FLVGVIAVTSIRGLLITMAKFFVSISNATSSLSNIIALLMAQIMGMYFVSSVLLMRMNVPEEYRTILTRILGDLKFNFYHRWFDVIFLISAVSSIVFL 454          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: B0F9S1_TRISP (ABA_GPCR domain-containing protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=B0F9S1_TRISP)

HSP 1 Score: 68.2 bits (165), Expect = 7.440e-10
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  153 QVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
             ++ LLL+   G+Y  SSVLL+R ++P  +R  IT  LG++KF+FY RWFD IFLVSG  ++ +L
Sbjct:  114 NIVCLLLSEVMGMYFVSSVLLIRMSMPAEYRSIITDVLGELKFNFYHRWFDVIFLVSGLSSIFFL 178          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A7S2SW26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW26_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.730e-9
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  144 IPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVAS 356
            + A+ L+ L+    G+YM SS+LLLR NVP H+R  ++  LG ++F FY +WFD+IF+ S   T+   VA+
Sbjct:   58 VSAKALAPLVTQLLGLYMLSSLLLLRINVPCHYRAVLSEVLGQLEFGFYHQWFDTIFIASSLTTVSIKVAA 128          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A0V1B775_TRISP (Golgi pH regulator (Fragment) n=1 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1B775_TRISP)

HSP 1 Score: 68.9 bits (167), Expect = 5.050e-9
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  153 QVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVASGQATRRLRQDRVLTESSVDFGAR 425
             ++ LLL+   G+Y  SSVLL+R ++P  +R  IT  LG++KF+FY RWFD IFLVSG  ++ +L     A ++   D+ +  S + FG +
Sbjct:  437 NIVCLLLSEVMGMYFVSSVLLIRMSMPAEYRSIITDVLGELKFNFYHRWFDVIFLVSGLSSIFFLY---MARKKYIPDKAVGRS-IRFGQK 523          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A835Z8E4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.420e-9
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  147 PAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHAL-----------GDIKFSFYGRWFDSIFLVSGCGTLLYLVA 353
            PA V +L+LA   G   TSSVLLLR NVP  +RVAIT AL           G + F+FY  WFD++F+V+G GT L L+A
Sbjct:  254 PAPVWALVLAQAVGTCFTSSVLLLRVNVPYQYRVAITAALEGHATADSGGGGALHFAFYHHWFDAVFVVAGVGTALALLA 333          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A6F9C675_9TELE (Uncharacterized protein n=2 Tax=Coregonus TaxID=27772 RepID=A0A6F9C675_9TELE)

HSP 1 Score: 67.4 bits (163), Expect = 7.970e-9
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  153 QVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
             V+ L+LA   G+Y+ SSVLL+R ++P  +R  +T  LG+++F+FY RWFD IFLVS   ++L+L
Sbjct:  275 NVIVLVLAQIMGMYIVSSVLLMRMSMPREYRSIVTEVLGELQFNFYHRWFDVIFLVSALSSILFL 339          
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A5J4YLI6_PORPP (Golgi pH regulator n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLI6_PORPP)

HSP 1 Score: 67.8 bits (164), Expect = 9.550e-9
Identity = 33/75 (44.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  162 SLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVS-GCGTLLYLVASGQATRRLRQ 383
            +++L+   G+Y  SS++L+R  +P  +R+ I  ALGD+KFSF+ RWFDSIF+VS G GTL+  +   ++ RR+ +
Sbjct:  440 AIMLSELIGLYAISSIVLIRNVLPRGYRLVIADALGDVKFSFFKRWFDSIFIVSAGAGTLMLALQHVRSYRRVEK 514          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHI2_ECTSI1.410e-1656.79G-protein coupled receptor n=1 Tax=Ectocarpus sili... [more]
A0A6H5JQ94_9PHAE1.580e-1656.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A260YW31_CAERE1.110e-1138.78Uncharacterized protein (Fragment) n=1 Tax=Caenorh... [more]
A8Y3D2_CAEBR1.930e-1139.80Protein CBG23048 n=9 Tax=Caenorhabditis TaxID=6237... [more]
B0F9S1_TRISP7.440e-1049.23ABA_GPCR domain-containing protein n=1 Tax=Trichin... [more]
A0A7S2SW26_9STRA2.730e-943.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0V1B775_TRISP5.050e-940.66Golgi pH regulator (Fragment) n=1 Tax=Trichinella ... [more]
A0A835Z8E4_9STRA7.420e-950.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6F9C675_9TELE7.970e-947.69Uncharacterized protein n=2 Tax=Coregonus TaxID=27... [more]
A0A5J4YLI6_PORPP9.550e-944.00Golgi pH regulator n=1 Tax=Porphyridium purpureum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5358contigP-wetherbeei_contig5358:2..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHI2
Preferred nameGPR89A
PFAMsABA_GPCR,GPHR_N
Model size1079
Max annot lvl2759|Eukaryota
KEGG koko:K22078,ko:K22193
KEGG TC1.A.38
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000166,GO:0001101,GO:0001882,GO:0001883,GO:0002020,GO:0002790,GO:0003006,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006873,GO:0006885,GO:0006928,GO:0006950,GO:0006996,GO:0007030,GO:0007032,GO:0007275,GO:0008104,GO:0008150,GO:0008289,GO:0008308,GO:0008509,GO:0009266,GO:0009306,GO:0009409,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009987,GO:0010033,GO:0010228,GO:0010256,GO:0010427,GO:0010468,GO:0012505,GO:0015031,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0017076,GO:0019001,GO:0019222,GO:0019725,GO:0019840,GO:0019899,GO:0022414,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0030003,GO:0030004,GO:0030587,GO:0030641,GO:0030660,GO:0031090,GO:0031224,GO:0031406,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032580,GO:0032940,GO:0033036,GO:0033293,GO:0033554,GO:0033993,GO:0034220,GO:0035639,GO:0036094,GO:0040011,GO:0042175,GO:0042221,GO:0042562,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043177,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043588,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045851,GO:0046903,GO:0048388,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0048870,GO:0048878,GO:0050789,GO:0050801,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070417,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090702,GO:0097159,GO:0097305,GO:0097367,GO:0097708,GO:0098588,GO:0098656,GO:0098771,GO:0098791,GO:0098805,GO:0098827,GO:0099120,GO:1901265,GO:1901363,GO:1901700
Exons2
Evalue1.35e-14
EggNOG OGsKOG2417@1|root,KOG2417@2759|Eukaryota
EC3.2.1.107
Descriptionintracellular pH reduction
Cds size249
COG categoryS
CAZyGH65
BRITEko00000,ko01000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.2421823-UTR-P-wetherbeei_contig5358:1..1951683186801.2421823-UTR-P-wetherbeei_contig5358:1..195Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5358 2..195 +
1683186801.2749908-UTR-P-wetherbeei_contig5358:576..12121683186801.2749908-UTR-P-wetherbeei_contig5358:576..1212Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5358 577..1212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.2533388-CDS-P-wetherbeei_contig5358:195..2781683186801.2533388-CDS-P-wetherbeei_contig5358:195..278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5358 196..278 +
1683186801.2666492-CDS-P-wetherbeei_contig5358:410..5761683186801.2666492-CDS-P-wetherbeei_contig5358:410..576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5358 411..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5358.1.1prot_P-wetherbeei_contig5358.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5358 196..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5358.1.1

>prot_P-wetherbeei_contig5358.1.1 ID=prot_P-wetherbeei_contig5358.1.1|Name=mRNA_P-wetherbeei_contig5358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLY
LVASGQATRRLRQDRVLTESSVDFGARSGHAD*
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mRNA from alignment at P-wetherbeei_contig5358:2..1212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5358.1.1 ID=mRNA_P-wetherbeei_contig5358.1.1|Name=mRNA_P-wetherbeei_contig5358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1211bp|location=Sequence derived from alignment at P-wetherbeei_contig5358:2..1212+ (Phaeothamnion wetherbeei SAG_119_79)
TGATTCTATCCGTCGCTACCCCACTCTCGCGATTTGTGTCTCCAATCCTT CCTTTTCTGCCCGTCTGCCTCTCTCAACAACCAATTTGTGGGCGTCGCCA TGCTGCGGCCTCCGTCTTCATCTCCTTCGTGCTCAGGGCGGCAATACCAG CGCAGGTGCTGTCGCTCCTACTGGCCCTCTTCGCAGGGATCTACATGACG TCCAGCGTGCTGCTGCTGCGAACCAACGTCCCTGACCACCACCGCGTCGC CATTACGCATGCCCTCGGCGACATCAAGTAAATGTGACCACAGCTTTCTC TGCGCCTTGGCTCAGATTGTGGAGTTCTTCTTTCGCCCTTCACCAACCGC CACTCGCTTCTTGACGCACGTATGCCGCTCTCCGTTGCTCATTCTCCGGC TATTGCCAGGTTTAGCTTCTACGGGCGATGGTTCGATTCCATCTTCCTGG TTTCTGGGTGCGGCACACTGCTATATCTGGTGGCATCCGGTCAAGCGACG CGGCGGCTCCGTCAAGACCGCGTCCTCACGGAATCGTCAGTCGATTTTGG CGCCCGCTCAGGACACGCGGACTGAACGAAGAAAACACTTTGACGGCTTG CCGCCTTACCTGGCCATCTGGCCTCTGAGACGAAGAAAGGGAAGTTCACA CATTATCAAGGCACTTTTGACCCTGCTAGATACACGTTTACCCCGTTCGC AATGGAGGCTCATGGTTGACTAGGGCTGCAGGCCCAGCAGCTGCGTAAGT CCCTGGCGCTGCATCTGGTCGGGGGGAAGGACAGCCCAGACAAGGCGAAG ACGGGGCGGGAAGGTTATGTAGCCATTGGATGCGCCAGCGGCTCAGTGGA GCTAGAGAACGTGCGTTGTTTCGTGGCAGGTGGAGGGGGAATTCAGGCGG GCGGTGCGGTGACAATGGGACCTGGCTGGCGGTAGTGGCGGCTGAGCTGA GGAGGATGCGCTTGACCGACAAGTTTGGGAGTGCTGCGGATTTTTGGTTC GCGGGCAGCTAGGGCAGCAAGGTGGCGCCCCCAGAGCCACCTTATGCTGT CCTTTTCCCTCCTCAGATTTTCTTCAATCGCAGGCATCGTCGTTTGAATG CGCTGTCTTAATTTTAGTAGTTATTAAGGAGCAAAAAAGAAAAGGTTGCC CTCTGCAGCTGCCGTCTTTTGGGGATACCTCAAAGCTCGGCTGAAGACGT TTAAGTTCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5358:2..1212+

>mRNA_P-wetherbeei_contig5358.1.1 ID=mRNA_P-wetherbeei_contig5358.1.1|Name=mRNA_P-wetherbeei_contig5358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig5358:2..1212+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCCAGCGTGCTGCTGCTGCGAACCAACGTCCCTGACCACCACCG
CGTCGCCATTACGCATGCCCTCGGCGACATCAAGTTTAGCTTCTACGGGC
GATGGTTCGATTCCATCTTCCTGGTTTCTGGGTGCGGCACACTGCTATAT
CTGGTGGCATCCGGTCAAGCGACGCGGCGGCTCCGTCAAGACCGCGTCCT
CACGGAATCGTCAGTCGATTTTGGCGCCCGCTCAGGACACGCGGACTGA
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