mRNA_P-wetherbeei_contig5358.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: D8LHI2_ECTSI (G-protein coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI2_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.410e-16 Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 3
Query: 144 IPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVASGQATRRLRQD 386
IPAQVLSLL ++ G Y TSSV+L+R N+P HRVAIT LG ++FSFY RWFD++FL+SGC T + L+A A R D
Sbjct: 384 IPAQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFHLANRNSDAD 464
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A6H5JQ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ94_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.580e-16 Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 3
Query: 144 IPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVASGQATRRLRQD 386
IPAQVLSLL ++ G Y TSSV+L+R N+P HRVAIT LG ++FSFY RWFD++FL+SGC T + L+A A R D
Sbjct: 483 IPAQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFHLANRNSDAD 563
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A260YW31_CAERE (Uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A260YW31_CAERE) HSP 1 Score: 75.5 bits (184), Expect = 1.110e-11 Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 3
Query: 54 FLPVCLSQQPICGRRHAAASVFISFVLRAAIPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
FL ++ + G A F+S + + +++LL+A G+Y SSVLL+R NVP+ +R +T LGD+KF+FY RWFD IFL+S ++++L
Sbjct: 200 FLVGVIAVTSVRGLLITMAKFFVSISNSTSSLSNIIALLMAQIMGMYFVSSVLLMRMNVPEEYRTILTRILGDLKFNFYHRWFDVIFLISAVSSIVFL 297
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A8Y3D2_CAEBR (Protein CBG23048 n=9 Tax=Caenorhabditis TaxID=6237 RepID=A8Y3D2_CAEBR) HSP 1 Score: 75.9 bits (185), Expect = 1.930e-11 Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 3
Query: 54 FLPVCLSQQPICGRRHAAASVFISFVLRAAIPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
FL ++ I G A F+S + + +++LL+A G+Y SSVLL+R NVP+ +R +T LGD+KF+FY RWFD IFL+S ++++L
Sbjct: 357 FLVGVIAVTSIRGLLITMAKFFVSISNATSSLSNIIALLMAQIMGMYFVSSVLLMRMNVPEEYRTILTRILGDLKFNFYHRWFDVIFLISAVSSIVFL 454
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: B0F9S1_TRISP (ABA_GPCR domain-containing protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=B0F9S1_TRISP) HSP 1 Score: 68.2 bits (165), Expect = 7.440e-10 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query: 153 QVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
++ LLL+ G+Y SSVLL+R ++P +R IT LG++KF+FY RWFD IFLVSG ++ +L
Sbjct: 114 NIVCLLLSEVMGMYFVSSVLLIRMSMPAEYRSIITDVLGELKFNFYHRWFDVIFLVSGLSSIFFL 178
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A7S2SW26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW26_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.730e-9 Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 3
Query: 144 IPAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVAS 356
+ A+ L+ L+ G+YM SS+LLLR NVP H+R ++ LG ++F FY +WFD+IF+ S T+ VA+
Sbjct: 58 VSAKALAPLVTQLLGLYMLSSLLLLRINVPCHYRAVLSEVLGQLEFGFYHQWFDTIFIASSLTTVSIKVAA 128
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A0V1B775_TRISP (Golgi pH regulator (Fragment) n=1 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1B775_TRISP) HSP 1 Score: 68.9 bits (167), Expect = 5.050e-9 Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 3
Query: 153 QVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYLVASGQATRRLRQDRVLTESSVDFGAR 425
++ LLL+ G+Y SSVLL+R ++P +R IT LG++KF+FY RWFD IFLVSG ++ +L A ++ D+ + S + FG +
Sbjct: 437 NIVCLLLSEVMGMYFVSSVLLIRMSMPAEYRSIITDVLGELKFNFYHRWFDVIFLVSGLSSIFFLY---MARKKYIPDKAVGRS-IRFGQK 523
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A835Z8E4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E4_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 7.420e-9 Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query: 147 PAQVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHAL-----------GDIKFSFYGRWFDSIFLVSGCGTLLYLVA 353
PA V +L+LA G TSSVLLLR NVP +RVAIT AL G + F+FY WFD++F+V+G GT L L+A
Sbjct: 254 PAPVWALVLAQAVGTCFTSSVLLLRVNVPYQYRVAITAALEGHATADSGGGGALHFAFYHHWFDAVFVVAGVGTALALLA 333
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A6F9C675_9TELE (Uncharacterized protein n=2 Tax=Coregonus TaxID=27772 RepID=A0A6F9C675_9TELE) HSP 1 Score: 67.4 bits (163), Expect = 7.970e-9 Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query: 153 QVLSLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYL 347
V+ L+LA G+Y+ SSVLL+R ++P +R +T LG+++F+FY RWFD IFLVS ++L+L
Sbjct: 275 NVIVLVLAQIMGMYIVSSVLLMRMSMPREYRSIVTEVLGELQFNFYHRWFDVIFLVSALSSILFL 339
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Match: A0A5J4YLI6_PORPP (Golgi pH regulator n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLI6_PORPP) HSP 1 Score: 67.8 bits (164), Expect = 9.550e-9 Identity = 33/75 (44.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query: 162 SLLLALFAGIYMTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVS-GCGTLLYLVASGQATRRLRQ 383
+++L+ G+Y SS++L+R +P +R+ I ALGD+KFSF+ RWFDSIF+VS G GTL+ + ++ RR+ +
Sbjct: 440 AIMLSELIGLYAISSIVLIRNVLPRGYRLVIADALGDVKFSFFKRWFDSIFIVSAGAGTLMLALQHVRSYRRVEK 514 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5358.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5358.1.1 >prot_P-wetherbeei_contig5358.1.1 ID=prot_P-wetherbeei_contig5358.1.1|Name=mRNA_P-wetherbeei_contig5358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp MTSSVLLLRTNVPDHHRVAITHALGDIKFSFYGRWFDSIFLVSGCGTLLYback to top mRNA from alignment at P-wetherbeei_contig5358:2..1212+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5358.1.1 ID=mRNA_P-wetherbeei_contig5358.1.1|Name=mRNA_P-wetherbeei_contig5358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1211bp|location=Sequence derived from alignment at P-wetherbeei_contig5358:2..1212+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5358:2..1212+ >mRNA_P-wetherbeei_contig5358.1.1 ID=mRNA_P-wetherbeei_contig5358.1.1|Name=mRNA_P-wetherbeei_contig5358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig5358:2..1212+ (Phaeothamnion wetherbeei SAG_119_79)back to top |