mRNA_P-wetherbeei_contig53541.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53541.1.1
Unique NamemRNA_P-wetherbeei_contig53541.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: UPI001BC20E9D (DUF4148 domain-containing protein n=1 Tax=Hydrogenophaga sp. TaxID=1904254 RepID=UPI001BC20E9D)

HSP 1 Score: 102 bits (254), Expect = 4.390e-24
Identity = 101/177 (57.06%), Postives = 115/177 (64.97%), Query Frame = 1
Query:   22 RLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVVVA------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEYVAPRSAAANTAVAAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNQLYPNRYPQPVLAQGKTREDVR 534
            RL+VVAIALSTLVAGHALAADPA  KTREQVRAEL +A R GD++ADG TG R NQ+ P  Y+Q  V A       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    A R+AA     A + G                            +N+L+P+RYPQP LAQGK+R+DVR
Sbjct:    4 RLSVVAIALSTLVAGHALAADPAQAKTREQVRAELAQAQRNGDLIADGETGLRFNQVSPHLYSQATVAAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRTAAP-AGEALSQGKTRAQVKAELAQAVRNGDVIADGESGLRYNELFPSRYPQPTLAQGKSRDDVR 179          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: A0A1Y2R894_9BURK (Uncharacterized protein n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R894_9BURK)

HSP 1 Score: 100 bits (250), Expect = 4.970e-24
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   16 NPRLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVV 222
            N RL+VVAIALSTLVAGHALAA+P VGKTREQVRAEL +A R GD++A+G +G R NQLYP +YAQP V
Sbjct:    3 NTRLSVVAIALSTLVAGHALAAEPTVGKTREQVRAELAQAQRNGDLIANGESGLRFNQLYPQQYAQPAV 71          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: A0A6P1IYT6_9BURK (DUF4148 domain-containing protein n=2 Tax=Hydrogenophaga sp. BPS33 TaxID=2651974 RepID=A0A6P1IYT6_9BURK)

HSP 1 Score: 98.6 bits (244), Expect = 2.840e-22
Identity = 100/185 (54.05%), Postives = 117/185 (63.24%), Query Frame = 1
Query:    1 KEIVVNPRLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVVVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEYVAPRSAA-------ANTAVAAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNQLYPNRYPQPVLAQGKTREDVR 534
            KE V+  RL+VVA+ALSTLVAGHALAAD +VGKTR++VRAEL +AIR+GD++ADGATGQR N+L P  YA   V   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX        AA       A+ A A   G                            +N+L+P +YPQ V AQG+ R DVR
Sbjct:   28 KETVMKSRLSVVALALSTLVAGHALAADASVGKTRDEVRAELAQAIRSGDLIADGATGQRYNELSPEFYAPKAVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVRAEAPVASQAAAPVVGKTRAQVKAELAEAIRTGDMVADGATGAKYNELFPQQYPQSVTAQGQAR-DVR 211          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: A0A6P1IFP6_9BURK (DUF4148 domain-containing protein n=1 Tax=Hydrogenophaga sp. PBL-H3 TaxID=434010 RepID=A0A6P1IFP6_9BURK)

HSP 1 Score: 97.4 bits (241), Expect = 3.610e-22
Identity = 99/176 (56.25%), Postives = 106/176 (60.23%), Query Frame = 1
Query:   16 NPRLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVVVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEYVAPRSAAANTAVAA---ASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNQLYPNRYPQPVLAQGKTREDVR 534
            N RL+VVAIALSTLVAGHALAADPA  KTREQVRAEL EA R G ++ADG TG R NQ+ P  Y Q  VV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +A   TA A    A G                            F  LYPNRYP     Q K+R+DVR
Sbjct:    2 NTRLSVVAIALSTLVAGHALAADPAAAKTREQVRAELVEAQRNGTLIADGETGLRFNQVSPHLYPQATVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATRTTAPAVEVVAQGKTRAQVRAELAEAQANGELVADGETGARFKDLYPNRYPVQATVQAKSRDDVR 177          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: A0A0T2YQ46_9BURK (Uncharacterized protein n=2 Tax=unclassified Hydrogenophaga TaxID=2610897 RepID=A0A0T2YQ46_9BURK)

HSP 1 Score: 96.7 bits (239), Expect = 7.520e-22
Identity = 97/169 (57.40%), Postives = 108/169 (63.91%), Query Frame = 1
Query:   16 NPRLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVVVA------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEYVAPRSAAANTAVAAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNQLYPNRYPQPVL 504
            N RL+VVAIALSTLVAGHALAADPA  K+REQVRAEL EA RTGD++AD  TG R NQ+Y + Y Q  V +       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +Y A R++A    V A  G                            FNQLYPNRYPQP +
Sbjct:    2 NTRLSVVAIALSTLVAGHALAADPAAAKSREQVRAELAEAQRTGDLIADSETGLRFNQIYSNLYPQAAVASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQYAATRTSAPAVEVVA-QGKTRAEVKAELAEAQRNGDLIADSETGQRFNQLYPNRYPQPTV 169          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: UPI0014858CCF (DUF4148 domain-containing protein n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0014858CCF)

HSP 1 Score: 96.7 bits (239), Expect = 7.890e-22
Identity = 97/170 (57.06%), Postives = 114/170 (67.06%), Query Frame = 1
Query:   22 RLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQP-VVVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEYVAPR------SAAANTAVAAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNQLYPNRYPQPVLAQ 510
            RL+VVA+ALS+LVAGHALAAD +VGKTR++VRAEL +AIR+GD++ADGATGQR N++ P  YAQP  VVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             + A+  A A A G                            +N+LYPNRY QPV+AQ
Sbjct:    4 RLSVVALALSSLVAGHALAADVSVGKTRDEVRAELAQAIRSGDMIADGATGQRYNEIAPQLYAQPQAVVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADASTVAAAPAVGKTRAEVKAELAEAIRTGDMIADGATGAKYNELYPNRYAQPVMAQ 173          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: UPI0010F51F62 (DUF4148 domain-containing protein n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0010F51F62)

HSP 1 Score: 92.8 bits (229), Expect = 2.300e-20
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:   25 LTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQP-VVVAS 231
            L+VVA+ALS+LVAGHA+AAD +VGKTR +V+AEL +AIR+GD++ADGATGQR N+L P  YAQP  VVAS
Sbjct:    7 LSVVALALSSLVAGHAMAADASVGKTRAEVKAELAQAIRSGDLIADGATGQRYNELSPQLYAQPQAVVAS 76          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: UPI000824F754 (DUF4148 domain-containing protein n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI000824F754)

HSP 1 Score: 91.7 bits (226), Expect = 4.940e-20
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   22 RLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVVVA 228
            RL+VVAIALS LVAG A AADPA  KTREQVRAEL +AIR GD++ADG TG    +L+P++YAQPV  A
Sbjct:    4 RLSVVAIALSALVAGQAFAADPAAAKTREQVRAELAQAIRNGDMIADGQTGATYKELFPAQYAQPVATA 72          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: A0A2W4TZQ9_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A2W4TZQ9_9BURK)

HSP 1 Score: 92.0 bits (227), Expect = 8.430e-20
Identity = 50/71 (70.42%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 KEIVVNPRLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQ 213
            KE V+  RL+VVAIALSTLVAGHALAADP V KTREQVRAEL EA R G ++ADG TG R NQ+ P  Y Q
Sbjct:   27 KETVMKTRLSVVAIALSTLVAGHALAADPTVAKTREQVRAELVEAQRNGSLIADGETGLRFNQVSPHLYPQ 97          
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Match: A0A1F4J6K3_9BURK (Uncharacterized protein n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4J6K3_9BURK)

HSP 1 Score: 84.7 bits (208), Expect = 4.100e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   28 TVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGDIVADGATGQRLNQLYPSRYAQPVV 222
            T + +A++TL AGHALAADPA  KTREQVRAEL EA RTG+IVA+  TG+ LNQ+YP RYA  VV
Sbjct:    7 TAITLAIATLSAGHALAADPATAKTREQVRAELLEAQRTGNIVANTETGELLNQVYPGRYAAEVV 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BC20E9D4.390e-2457.06DUF4148 domain-containing protein n=1 Tax=Hydrogen... [more]
A0A1Y2R894_9BURK4.970e-2473.91Uncharacterized protein n=1 Tax=Hydrogenophaga sp.... [more]
A0A6P1IYT6_9BURK2.840e-2254.05DUF4148 domain-containing protein n=2 Tax=Hydrogen... [more]
A0A6P1IFP6_9BURK3.610e-2256.25DUF4148 domain-containing protein n=1 Tax=Hydrogen... [more]
A0A0T2YQ46_9BURK7.520e-2257.40Uncharacterized protein n=2 Tax=unclassified Hydro... [more]
UPI0014858CCF7.890e-2257.06DUF4148 domain-containing protein n=1 Tax=Hydrogen... [more]
UPI0010F51F622.300e-2070.00DUF4148 domain-containing protein n=1 Tax=Hydrogen... [more]
UPI000824F7544.940e-2068.12DUF4148 domain-containing protein n=1 Tax=Hydrogen... [more]
A0A2W4TZQ9_9BURK8.430e-2070.42Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A1F4J6K3_9BURK4.100e-1767.69Uncharacterized protein n=3 Tax=Burkholderiales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53541contigP-wetherbeei_contig53541:2..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog338969.Rfer_1140
PFAMsDUF4148
Model size534
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.63e-09
EggNOG OGs2ECQP@1|root,336ND@2|Bacteria,1N8WQ@1224|Proteobacteria,2VWZM@28216|Betaproteobacteria,4AFPN@80864|Comamonadaceae
DescriptionDomain of unknown function (DUF4148)
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.7806761-CDS-P-wetherbeei_contig53541:1..5351683186800.7806761-CDS-P-wetherbeei_contig53541:1..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53541 2..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53541.1.1prot_P-wetherbeei_contig53541.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53541 2..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53541.1.1

>prot_P-wetherbeei_contig53541.1.1 ID=prot_P-wetherbeei_contig53541.1.1|Name=mRNA_P-wetherbeei_contig53541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
KEIVVNPRLTVVAIALSTLVAGHALAADPAVGKTREQVRAELNEAIRTGD
IVADGATGQRLNQLYPSRYAQPVVVASKSRADVRAEVQQARLSGELVTDG
ETGEKIAEYVAPRSAAANTAVAAASGKTRAEVKAELAEAIRNGDLVADGE
TGAKFNQLYPNRYPQPVLAQGKTREDVR
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mRNA from alignment at P-wetherbeei_contig53541:2..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53541.1.1 ID=mRNA_P-wetherbeei_contig53541.1.1|Name=mRNA_P-wetherbeei_contig53541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig53541:2..535- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAAATTGTCGTGAATCCTCGTCTGACTGTTGTTGCCATCGCCCTCTC CACCCTCGTTGCCGGCCACGCCCTGGCTGCCGATCCTGCTGTGGGCAAGA CCCGCGAACAGGTTCGCGCCGAACTGAACGAAGCCATCCGCACCGGTGAC ATCGTCGCCGACGGCGCCACCGGTCAACGCCTCAACCAGCTGTACCCCAG CCGTTACGCCCAGCCGGTGGTCGTCGCGTCCAAGAGCCGTGCCGACGTGC GCGCCGAAGTCCAGCAAGCCCGCCTGAGCGGTGAACTGGTCACCGACGGC GAGACCGGCGAGAAGATCGCCGAGTACGTGGCCCCGCGCAGCGCTGCTGC CAACACCGCCGTGGCCGCCGCCTCCGGCAAGACCCGCGCCGAAGTGAAGG CGGAGCTGGCCGAAGCCATCCGCAATGGTGACCTGGTGGCCGACGGTGAA ACCGGTGCCAAGTTCAACCAGCTGTACCCCAACCGCTACCCGCAGCCGGT GCTGGCCCAGGGCAAGACGCGCGAAGACGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53541:2..535-

>mRNA_P-wetherbeei_contig53541.1.1 ID=mRNA_P-wetherbeei_contig53541.1.1|Name=mRNA_P-wetherbeei_contig53541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig53541:2..535- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAAATTGTCGTGAATCCTCGTCTGACTGTTGTTGCCATCGCCCTCTC
CACCCTCGTTGCCGGCCACGCCCTGGCTGCCGATCCTGCTGTGGGCAAGA
CCCGCGAACAGGTTCGCGCCGAACTGAACGAAGCCATCCGCACCGGTGAC
ATCGTCGCCGACGGCGCCACCGGTCAACGCCTCAACCAGCTGTACCCCAG
CCGTTACGCCCAGCCGGTGGTCGTCGCGTCCAAGAGCCGTGCCGACGTGC
GCGCCGAAGTCCAGCAAGCCCGCCTGAGCGGTGAACTGGTCACCGACGGC
GAGACCGGCGAGAAGATCGCCGAGTACGTGGCCCCGCGCAGCGCTGCTGC
CAACACCGCCGTGGCCGCCGCCTCCGGCAAGACCCGCGCCGAAGTGAAGG
CGGAGCTGGCCGAAGCCATCCGCAATGGTGACCTGGTGGCCGACGGTGAA
ACCGGTGCCAAGTTCAACCAGCTGTACCCCAACCGCTACCCGCAGCCGGT
GCTGGCCCAGGGCAAGACGCGCGAAGACGTGCGC
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