mRNA_P-wetherbeei_contig53353.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53353.1.1
Unique NamemRNA_P-wetherbeei_contig53353.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: H3G8A0_PHYRM (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8A0_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    4 TANPHQILSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            T++P +   LVG  +F+RCNP SD+F VH FHHIEF+C D+
Sbjct:    7 TSSPSKKTQLVGCQNFERCNPKSDRFDVHKFHHIEFFCADA 47          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: A0A0D2LZE5_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LZE5_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 2.440e-8
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1
Query:   25 LSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            L LVG   FKR NP SD+F VH FHHIEFWC D+
Sbjct:   19 LKLVGYDKFKRHNPKSDRFKVHRFHHIEFWCADA 52          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: A0A7S0CU10_MICPS (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CU10_MICPS)

HSP 1 Score: 57.0 bits (136), Expect = 2.550e-8
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   31 LVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            LVG  +FKR NPMSD+F +H FHH+EFWCGD+
Sbjct:   19 LVGYKNFKRHNPMSDRFAMHGFHHVEFWCGDA 50          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: A0A7S0RWN0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RWN0_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 5.850e-8
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   31 LVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            LVG A+FKR NPMSD+F VH FHH++FWC D+
Sbjct:   30 LVGHANFKRHNPMSDRFTVHSFHHLDFWCADA 61          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: A0A2J8A4J9_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4J9_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 6.490e-8
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   25 LSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            + LVG  +F R NP+SDKF VH FHHIEFWCGD+
Sbjct:   16 MRLVGYNNFVRQNPLSDKFAVHKFHHIEFWCGDA 49          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: H3G6L3_PHYRM (4-hydroxyphenylpyruvate dioxygenase n=24 Tax=Phytophthora TaxID=4783 RepID=H3G6L3_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 6.510e-8
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    7 ANPHQILSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            ++P +   LVG  +F+RCNP SD+F VH FHHIEF+C D+
Sbjct:    1 SSPSKKTQLVGCQNFERCNPKSDRFDVHKFHHIEFFCADA 40          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: UPI001BB4694E (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI001BB4694E)

HSP 1 Score: 53.1 bits (126), Expect = 7.970e-8
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   19 QILSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            Q   LVG  +F R NPMSD+F V  FHHIEFWCGD+
Sbjct:    7 QSFKLVGYKNFVRHNPMSDRFQVKKFHHIEFWCGDA 42          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: A0A803LRL0_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LRL0_CHEQI)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-7
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   31 LVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            LVG ++F R NPMSD+F V+ FHHIEFWCGD+
Sbjct:   72 LVGYSNFVRVNPMSDRFSVNKFHHIEFWCGDA 103          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: S4VDF2_PERFR (Hydroxyphenylpyruvate dioxygenase n=1 Tax=Perilla frutescens TaxID=48386 RepID=S4VDF2_PERFR)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1
Query:    7 ANPHQILSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            A  H    LVG  +F R NP SD+F VH FHH+EFWCGD+
Sbjct:   53 APAHGEFKLVGYKNFVRANPNSDRFPVHRFHHVEFWCGDA 92          
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Match: Q70ZL8_CHLRE (4-hydroxyphenylpyruvate dioxygenase (Fragment) n=6 Tax=Chlamydomonas TaxID=3052 RepID=Q70ZL8_CHLRE)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   25 LSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS 126
            + LVG  +F R NP+SDKF VH FHHI+FWCGD+
Sbjct:   15 IKLVGYKNFVRQNPLSDKFTVHKFHHIDFWCGDA 48          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G8A0_PHYRM1.360e-856.104-hydroxyphenylpyruvate dioxygenase n=1 Tax=Phytop... [more]
A0A0D2LZE5_9CHLO2.440e-867.65Uncharacterized protein (Fragment) n=1 Tax=Monorap... [more]
A0A7S0CU10_MICPS2.550e-868.754-hydroxyphenylpyruvate dioxygenase n=1 Tax=Microm... [more]
A0A7S0RWN0_9CHLO5.850e-868.75Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A2J8A4J9_9CHLO6.490e-867.654-hydroxyphenylpyruvate dioxygenase n=1 Tax=Tetrab... [more]
H3G6L3_PHYRM6.510e-855.004-hydroxyphenylpyruvate dioxygenase n=24 Tax=Phyto... [more]
UPI001BB4694E7.970e-863.89hypothetical protein n=1 Tax=Acinetobacter baumann... [more]
A0A803LRL0_CHEQI1.660e-768.75Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
S4VDF2_PERFR1.670e-757.50Hydroxyphenylpyruvate dioxygenase n=1 Tax=Perilla ... [more]
Q70ZL8_CHLRE1.670e-764.714-hydroxyphenylpyruvate dioxygenase (Fragment) n=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53353contigP-wetherbeei_contig53353:84..209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra71097
PFAMsGlyoxalase
Model size126
Max annot lvl4776|Peronosporales
KEGG rclassRC00505,RC00738
KEGG koko:K00457
KEGG ReactionR01372,R02521
KEGG Pathwayko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100
KEGG ModuleM00044
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.23e-09
EggNOG OGsCOG3185@1|root,KOG0638@2759|Eukaryota,3QBQ2@4776|Peronosporales
EC1.13.11.27
Description4-hydroxyphenylpyruvate dioxygenase
Cds size126
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.4659452-CDS-P-wetherbeei_contig53353:83..2091683186798.4659452-CDS-P-wetherbeei_contig53353:83..209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53353 84..209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53353.1.1prot_P-wetherbeei_contig53353.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53353 84..209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53353.1.1

>prot_P-wetherbeei_contig53353.1.1 ID=prot_P-wetherbeei_contig53353.1.1|Name=mRNA_P-wetherbeei_contig53353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
MTANPHQILSLVGAAHFKRCNPMSDKFGVHDFHHIEFWCGDS
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mRNA from alignment at P-wetherbeei_contig53353:84..209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53353.1.1 ID=mRNA_P-wetherbeei_contig53353.1.1|Name=mRNA_P-wetherbeei_contig53353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig53353:84..209+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCGAATCCTCATCAAATTCTTAGCCTGGTCGGGGCGGCGCACTT CAAACGGTGCAACCCGATGTCTGACAAGTTTGGCGTTCACGACTTTCACC ACATTGAATTCTGGTGTGGTGATTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53353:84..209+

>mRNA_P-wetherbeei_contig53353.1.1 ID=mRNA_P-wetherbeei_contig53353.1.1|Name=mRNA_P-wetherbeei_contig53353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig53353:84..209+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCGAATCCTCATCAAATTCTTAGCCTGGTCGGGGCGGCGCACTT
CAAACGGTGCAACCCGATGTCTGACAAGTTTGGCGTTCACGACTTTCACC
ACATTGAATTCTGGTGTGGTGATTCG
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