mRNA_P-wetherbeei_contig53291.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53291.1.1
Unique NamemRNA_P-wetherbeei_contig53291.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: UPI00047C3882 (PQQ-dependent dehydrogenase, methanol/ethanol family n=2 Tax=Hyphomicrobium TaxID=81 RepID=UPI00047C3882)

HSP 1 Score: 158 bits (399), Expect = 1.010e-43
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            VLWQKKLGSGIIGNPITYKIKGKQYVSIF+GLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTF+L +
Sbjct:  550 VLWQKKLGSGIIGNPITYKIKGKQYVSIFSGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFSLGE 629          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A2N2Q625_9PROT (PQQ-dependent dehydrogenase, methanol/ethanol family (Fragment) n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-8 TaxID=2013720 RepID=A0A2N2Q625_9PROT)

HSP 1 Score: 148 bits (373), Expect = 2.640e-43
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            V+W +KLGSGIIGNP+TYKIKGKQYVS+FAG+GGWIG+PVTAGLDM+DK+GAIGATAMAKA+GLDKIPQGGELYTF L D
Sbjct:  135 VVWSRKLGSGIIGNPVTYKIKGKQYVSVFAGIGGWIGLPVTAGLDMDDKYGAIGATAMAKASGLDKIPQGGELYTFRLYD 214          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A2S5MRK3_HYPSQ (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MRK3_HYPSQ)

HSP 1 Score: 155 bits (391), Expect = 1.510e-42
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            VLW KKLGSGIIGNPITYK+KGKQYVSIFAGLGGWIGIPVTAGLDM+DKFGAIGATAMAKATGLDKIPQGGELYTF + D
Sbjct:  560 VLWSKKLGSGIIGNPITYKVKGKQYVSIFAGLGGWIGIPVTAGLDMDDKFGAIGATAMAKATGLDKIPQGGELYTFRIGD 639          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: V5SI26_9HYPH (Methanol dehydrogenase n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SI26_9HYPH)

HSP 1 Score: 150 bits (380), Expect = 5.890e-41
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            VLW +KLGSGIIGNPITYKI+GKQYV+IF+GLGGWIG+PVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGE+YTF ++D
Sbjct:  571 VLWSRKLGSGIIGNPITYKIQGKQYVTIFSGLGGWIGLPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGEVYTFRIAD 650          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A6I3KHB2_9HYPH (PQQ-dependent dehydrogenase, methanol/ethanol family n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KHB2_9HYPH)

HSP 1 Score: 147 bits (372), Expect = 6.910e-40
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            VLWQ++LGSGIIGNPITYK+KGKQYVSIFAGLGGWIGIPVTAGLDM DKFGAIGATAMAKATGLDKIPQ G LYTF L +
Sbjct:  553 VLWQQRLGSGIIGNPITYKLKGKQYVSIFAGLGGWIGIPVTAGLDMEDKFGAIGATAMAKATGLDKIPQAGMLYTFRLGE 632          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A135IA46_9GAMM (Methanol dehydrogenase n=1 Tax=Enterovibrio coralii TaxID=294935 RepID=A0A135IA46_9GAMM)

HSP 1 Score: 147 bits (370), Expect = 1.490e-39
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            V+W++KLGSGIIGNPITY + GKQYVS+FAGLGGWIG+PVTAGLDM+DK+GAIGATAMAKATGLDKIPQGGELYTF L D
Sbjct:  555 VVWERKLGSGIIGNPITYSVDGKQYVSVFAGLGGWIGLPVTAGLDMDDKYGAIGATAMAKATGLDKIPQGGELYTFRLFD 634          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A5C7JBJ9_9CHLR (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Thermomicrobiales bacterium TaxID=2482790 RepID=A0A5C7JBJ9_9CHLR)

HSP 1 Score: 142 bits (359), Expect = 4.560e-38
Identity = 65/76 (85.53%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTF 228
            VLW +KLGSGIIGNPITYK+KGKQYVS+++G+GGWIG+PVTAGLDM+DK+GAIGATAMAKATGLDKIPQGG LYTF
Sbjct:  551 VLWSRKLGSGIIGNPITYKVKGKQYVSVWSGIGGWIGLPVTAGLDMDDKYGAIGATAMAKATGLDKIPQGGTLYTF 626          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A534ARH4_9GAMM (PQQ-dependent dehydrogenase, methanol/ethanol family (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ARH4_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 7.880e-38
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            VLWQ++LGSGIIGNPITY + GKQYVS+++G+GGWIG+PVTAGLD+NDKFGAIGATAM KA GL  IPQGG LYTFA+ +
Sbjct:  205 VLWQRRLGSGIIGNPITYSVNGKQYVSVWSGIGGWIGLPVTAGLDLNDKFGAIGATAMTKAAGLSMIPQGGTLYTFAVQE 284          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A2S5M9M7_HYPSQ (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5M9M7_HYPSQ)

HSP 1 Score: 141 bits (356), Expect = 1.240e-37
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTF 228
            VLW++KL SGIIGNPITYK+KGKQYVSIF GLGGWIGIPVTAGLDM+DKFGAIGATAMAKATGLDKIPQGG L TF
Sbjct:  555 VLWERKLASGIIGNPITYKVKGKQYVSIFQGLGGWIGIPVTAGLDMDDKFGAIGATAMAKATGLDKIPQGGVLSTF 630          
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Match: A0A1E3VYR5_9HYPH (Methanol dehydrogenase n=3 Tax=Methyloceanibacter TaxID=1484898 RepID=A0A1E3VYR5_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 1.790e-37
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKFGAIGATAMAKATGLDKIPQGGELYTFALSD 240
            +LW +KLGSGIIGNPITYK+ GKQYVS+ +G+GGWIG+PVTAGLDMNDKFGAIGATAMAKATGL  IPQGG +YTF LSD
Sbjct:  562 ILWSRKLGSGIIGNPITYKVGGKQYVSVHSGIGGWIGLPVTAGLDMNDKFGAIGATAMAKATGLTNIPQGGTVYTFRLSD 641          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53291.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00047C38821.010e-4395.00PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A2N2Q625_9PROT2.640e-4385.00PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A2S5MRK3_HYPSQ1.510e-4292.50PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
V5SI26_9HYPH5.890e-4187.50Methanol dehydrogenase n=2 Tax=Hyphomicrobium TaxI... [more]
A0A6I3KHB2_9HYPH6.910e-4088.75PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A135IA46_9GAMM1.490e-3985.00Methanol dehydrogenase n=1 Tax=Enterovibrio corali... [more]
A0A5C7JBJ9_9CHLR4.560e-3885.53PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A534ARH4_9GAMM7.880e-3876.25PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A2S5M9M7_HYPSQ1.240e-3789.47PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A1E3VYR5_9HYPH1.790e-3781.25Methanol dehydrogenase n=3 Tax=Methyloceanibacter ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53291contigP-wetherbeei_contig53291:297..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267005.KB911256_gene1798
PFAMsPQQ
Model size243
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-44
EggNOG OGsCOG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2U4JV@28211|Alphaproteobacteria
DescriptionPQQ-like domain
Cds size243
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.8847303-CDS-P-wetherbeei_contig53291:296..5391683186797.8847303-CDS-P-wetherbeei_contig53291:296..539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53291 297..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53291.1.1prot_P-wetherbeei_contig53291.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53291 297..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53291.1.1

>prot_P-wetherbeei_contig53291.1.1 ID=prot_P-wetherbeei_contig53291.1.1|Name=mRNA_P-wetherbeei_contig53291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
VLWQKKLGSGIIGNPITYKIKGKQYVSIFAGLGGWIGIPVTAGLDMNDKF
GAIGATAMAKATGLDKIPQGGELYTFALSD*
back to top

mRNA from alignment at P-wetherbeei_contig53291:297..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53291.1.1 ID=mRNA_P-wetherbeei_contig53291.1.1|Name=mRNA_P-wetherbeei_contig53291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig53291:297..539- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGTGGCAGAAGAAGTTGGGCTCCGGCATCATCGGGAACCCGATCAC CTACAAGATCAAGGGCAAGCAGTATGTCTCGATCTTTGCGGGCCTCGGCG GCTGGATCGGTATTCCCGTCACGGCCGGTCTCGACATGAACGACAAGTTC GGCGCGATCGGTGCGACGGCGATGGCCAAGGCCACCGGCCTCGACAAGAT CCCGCAGGGCGGCGAGCTCTACACCTTCGCCCTCAGCGATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53291:297..539-

>mRNA_P-wetherbeei_contig53291.1.1 ID=mRNA_P-wetherbeei_contig53291.1.1|Name=mRNA_P-wetherbeei_contig53291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig53291:297..539- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGTGGCAGAAGAAGTTGGGCTCCGGCATCATCGGGAACCCGATCAC
CTACAAGATCAAGGGCAAGCAGTATGTCTCGATCTTTGCGGGCCTCGGCG
GCTGGATCGGTATTCCCGTCACGGCCGGTCTCGACATGAACGACAAGTTC
GGCGCGATCGGTGCGACGGCGATGGCCAAGGCCACCGGCCTCGACAAGAT
CCCGCAGGGCGGCGAGCTCTACACCTTCGCCCTCAGCGATTGA
back to top