mRNA_P-wetherbeei_contig53267.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53267.1.1
Unique NamemRNA_P-wetherbeei_contig53267.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A7Y0GT99_9BURK (DUF3309 domain-containing protein n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=A0A7Y0GT99_9BURK)

HSP 1 Score: 60.8 bits (146), Expect = 4.720e-11
Identity = 29/52 (55.77%), Postives = 32/52 (61.54%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG ILL+      +GVIPTW HSRSWGYGPSGG            LTGR+
Sbjct:    1 MSLGTILLVVLILMLIGVIPTWPHSRSWGYGPSGGLGLLVIIILVLLLTGRL 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A1F4JBP0_9BURK (DUF3309 domain-containing protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4JBP0_9BURK)

HSP 1 Score: 59.7 bits (143), Expect = 1.350e-10
Identity = 31/52 (59.62%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            M LG ILLI      VGVIPTWSHSRSWGYGPSG             LTGRM
Sbjct:    1 MGLGTILLIVLILMLVGVIPTWSHSRSWGYGPSGVLGLIVVILLVMVLTGRM 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A3B9NY87_9PROT (DUF3309 domain-containing protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A3B9NY87_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-10
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG ILL+      +GVIPTW HSRSWGYGPSGG     XXXXX  L+GR+
Sbjct:    1 MSLGTILLVIVVLMLIGVIPTWPHSRSWGYGPSGGLGLLLXXXXXLLLSGRL 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A5Q0BI10_9GAMM (DUF3309 domain-containing protein n=2 Tax=Methylococcaceae TaxID=403 RepID=A0A5Q0BI10_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-10
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG ILLI      +GVIPTW HSR WGYGPSGG   XXXXXXXX LTGR+
Sbjct:    1 MSLGTILLIILILMLIGVIPTWPHSRGWGYGPSGGLGLXXXXXXXXILTGRI 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: UPI00199E207C (DUF3309 domain-containing protein n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=UPI00199E207C)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-10
Identity = 37/52 (71.15%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG ILLI      VG IPTWSHSRSWGYGPSGG    XXXXXXX L GR+
Sbjct:    1 MSLGTILLIVLILMLVGAIPTWSHSRSWGYGPSGGIGLVXXXXXXXLLMGRI 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: UPI001988137D (Uncharacterized protein n=2 Tax=Rubrivivax sp. A210 TaxID=2772301 RepID=UPI001988137D)

HSP 1 Score: 59.7 bits (143), Expect = 2.020e-10
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   22 KENSMSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            +E +MSLGMILLI      +G +PTW HSR WGYGPSGG XXXXXXXXXXXL GR+
Sbjct:   14 EEQAMSLGMILLILLVLMLLGAVPTWPHSRGWGYGPSGGLXXXXXXXXXXXLMGRI 69          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A127QZF6_9BURK (Uncharacterized protein n=2 Tax=Collimonas pratensis TaxID=279113 RepID=A0A127QZF6_9BURK)

HSP 1 Score: 58.9 bits (141), Expect = 3.450e-10
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 1
Query:    1 PAASSTYKENSMSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            PA S+ YKE+SM  G ILLI      VG +PTW HSRSWGYGPSG             LTG +
Sbjct:    2 PAFSNFYKEHSM--GTILLIILILILVGALPTWPHSRSWGYGPSGISGLLVIILIVMLLTGHL 62          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A4P7RDW7_9BURK (DUF3309 domain-containing protein n=1 Tax=Hydrogenophaga sp. PAMC20947 TaxID=2565558 RepID=A0A4P7RDW7_9BURK)

HSP 1 Score: 58.5 bits (140), Expect = 3.880e-10
Identity = 29/52 (55.77%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG ILLI      VGVIP W HS+SWGYGPSGG            LTGR+
Sbjct:    1 MSLGTILLIVLILMLVGVIPAWGHSKSWGYGPSGGLGLVLIIVIVLLLTGRI 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: V4PF15_9CAUL (Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 TaxID=1282362 RepID=V4PF15_9CAUL)

HSP 1 Score: 58.5 bits (140), Expect = 3.880e-10
Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG IL+I      VG +PTW HSRSWGYGPSGG            LTGR+
Sbjct:    1 MSLGTILIIILVLLLVGALPTWGHSRSWGYGPSGGLGLVAVIVIILVLTGRI 52          
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Match: A0A8K0VAM0_9RHOB (DUF3309 domain-containing protein n=1 Tax=Szabonella alba TaxID=2804194 RepID=A0A8K0VAM0_9RHOB)

HSP 1 Score: 58.2 bits (139), Expect = 5.510e-10
Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   34 MSLGMILLIXXXXXXVGVIPTWSHSRSWGYGPSGGXXXXXXXXXXXXLTGRM 189
            MSLG ILLI      +GV+PTW HSRSWGYGPSGG            L GR+
Sbjct:    1 MSLGTILLIVLILALIGVLPTWGHSRSWGYGPSGGLGLVLIVVLILLLMGRI 52          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53267.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y0GT99_9BURK4.720e-1155.77DUF3309 domain-containing protein n=1 Tax=Rhodofer... [more]
A0A1F4JBP0_9BURK1.350e-1059.62DUF3309 domain-containing protein n=2 Tax=Burkhold... [more]
A0A3B9NY87_9PROT1.920e-1063.46DUF3309 domain-containing protein n=1 Tax=Gallione... [more]
A0A5Q0BI10_9GAMM1.920e-1071.15DUF3309 domain-containing protein n=2 Tax=Methyloc... [more]
UPI00199E207C1.920e-1071.15DUF3309 domain-containing protein n=1 Tax=Bdellovi... [more]
UPI001988137D2.020e-1069.64Uncharacterized protein n=2 Tax=Rubrivivax sp. A21... [more]
A0A127QZF6_9BURK3.450e-1050.79Uncharacterized protein n=2 Tax=Collimonas pratens... [more]
A0A4P7RDW7_9BURK3.880e-1055.77DUF3309 domain-containing protein n=1 Tax=Hydrogen... [more]
V4PF15_9CAUL3.880e-1053.85Uncharacterized protein n=1 Tax=Asticcacaulis sp. ... [more]
A0A8K0VAM0_9RHOB5.510e-1053.85DUF3309 domain-containing protein n=1 Tax=Szabonel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53267contigP-wetherbeei_contig53267:146..337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282362.AEAC466_00905
PFAMsDUF3309
Model size192
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.36e-11
EggNOG OGs2E4YG@1|root,32ZSB@2|Bacteria,1N74T@1224|Proteobacteria,2UGKQ@28211|Alphaproteobacteria,2KHAQ@204458|Caulobacterales
DescriptionProtein of unknown function (DUF3309)
Cds size192
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.4956522-CDS-P-wetherbeei_contig53267:145..3371683186797.4956522-CDS-P-wetherbeei_contig53267:145..337Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53267 146..337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53267.1.1prot_P-wetherbeei_contig53267.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53267 146..337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53267.1.1

>prot_P-wetherbeei_contig53267.1.1 ID=prot_P-wetherbeei_contig53267.1.1|Name=mRNA_P-wetherbeei_contig53267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
PAASSTYKENSMSLGMILLIVLVLILVGVIPTWSHSRSWGYGPSGGLGII
VLIVVVLLLTGRM*
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mRNA from alignment at P-wetherbeei_contig53267:146..337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53267.1.1 ID=mRNA_P-wetherbeei_contig53267.1.1|Name=mRNA_P-wetherbeei_contig53267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig53267:146..337- (Phaeothamnion wetherbeei SAG_119_79)
CCCGCGGCATCCTCAACCTACAAGGAGAATTCCATGAGCTTGGGCATGAT ATTGCTGATTGTGCTTGTCCTCATCCTGGTCGGAGTGATCCCGACCTGGT CGCACAGCCGTAGTTGGGGCTATGGTCCCAGCGGCGGCTTGGGGATCATC GTTCTCATCGTTGTTGTCCTGCTCCTGACCGGGCGGATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53267:146..337-

>mRNA_P-wetherbeei_contig53267.1.1 ID=mRNA_P-wetherbeei_contig53267.1.1|Name=mRNA_P-wetherbeei_contig53267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig53267:146..337- (Phaeothamnion wetherbeei SAG_119_79)
CCCGCGGCATCCTCAACCTACAAGGAGAATTCCATGAGCTTGGGCATGAT
ATTGCTGATTGTGCTTGTCCTCATCCTGGTCGGAGTGATCCCGACCTGGT
CGCACAGCCGTAGTTGGGGCTATGGTCCCAGCGGCGGCTTGGGGATCATC
GTTCTCATCGTTGTTGTCCTGCTCCTGACCGGGCGGATGTAG
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