mRNA_P-wetherbeei_contig53265.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53265.1.1
Unique NamemRNA_P-wetherbeei_contig53265.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A8I0C6K2_9CAUL (Helix-turn-helix transcriptional regulator n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A8I0C6K2_9CAUL)

HSP 1 Score: 114 bits (285), Expect = 6.010e-31
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   10 DAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVL 279
            DAP   DLA  A  AADLLR+LAN  RLQ+LC LR+GE SVG++A  V LS SALSQHLARLR D +VA RR+ QTI+YRIADPDVM +L
Sbjct:    3 DAPPLEDLARRAAGAADLLRLLANERRLQILCVLRSGERSVGELAAAVGLSPSALSQHLARLRADHLVAPRRRAQTIFYRIADPDVMRLL 92          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: UPI000422FC4F (metalloregulator ArsR/SmtB family transcription factor n=2 Tax=Solimonas TaxID=413435 RepID=UPI000422FC4F)

HSP 1 Score: 103 bits (257), Expect = 9.160e-27
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG 294
            +T++A ++  +AT+A  AA LLR LA+PHRLQVLC L  GE SVG++   V LSQSALSQHLARLR + +V+TRR+GQTIYY +AD   + V+  + G
Sbjct:    4 VTEEAAAQ--MATHAEEAAQLLRALASPHRLQVLCALAGGEHSVGELNARVGLSQSALSQHLARLRDEGLVSTRREGQTIYYALADGPALAVIEALHG 99          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: W9BRQ2_9SPHN (ArsR family transcriptional regulator n=5 Tax=Sphingomonadales TaxID=204457 RepID=W9BRQ2_9SPHN)

HSP 1 Score: 102 bits (255), Expect = 2.010e-26
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   31 LATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG 294
            +A  A  AA +LR+LANPHRLQVLC L  GE+SVG +   V LSQSALSQHLARLR + +V TRR+G +I+YRIADP V+ ++ V++ 
Sbjct:   14 MAAKAEEAAHMLRLLANPHRLQVLCLLVEGEMSVGAVQQQVALSQSALSQHLARLREEGLVETRREGTSIFYRIADPAVLQIMQVLAA 101          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A7L5ZB14_9CAUL (Winged helix-turn-helix transcriptional regulator n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A7L5ZB14_9CAUL)

HSP 1 Score: 102 bits (254), Expect = 2.770e-26
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVS 291
            +T DAP+   L  +A  AA LL+ LAN HRL +LC L TGE+ V QI   V LSQSALSQHLARLR D +VATRR+G  I+YRI DP V+ V+A ++
Sbjct:    2 ITADAPTLDALEQSAAHAAALLKSLANEHRLMILCQLGTGEMQVAQILSGVKLSQSALSQHLARLREDGLVATRREGVAIFYRIDDPAVLKVIATLA 98          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A0J7XHR8_9SPHN (ArsR family transcriptional regulator n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A0J7XHR8_9SPHN)

HSP 1 Score: 102 bits (254), Expect = 3.020e-26
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   19 SKIDLAT---NARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVS 291
            +K DL T   NA  AA LLRVLAN  RL +LC L  GELSVGQI   V LSQSALSQHLA LR + +VATRR  QTIYYRI DP  + V+A ++
Sbjct:    5 AKFDLTTFEANAARAATLLRVLANERRLMILCQLADGELSVGQIQPRVGLSQSALSQHLALLREEGIVATRRAAQTIYYRIVDPAALRVIATLA 98          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A3E1K9K1_9GAMM (ArsR family transcriptional regulator n=1 Tax=Wenzhouxiangella sediminis TaxID=1792836 RepID=A0A3E1K9K1_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 1.410e-25
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   16 PSKIDLATN-ARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVL 279
            P   DL ++ AR AA LLR LANP RL +LC L  GE SVG++ + + +SQSALSQHLARLR +++VATRRQ QTIYYRIADP V+ ++
Sbjct:   10 PDLADLDSDQARQAATLLRALANPTRLMLLCSLVEGEHSVGELNERIPMSQSALSQHLARLREEQLVATRRQSQTIYYRIADPMVLELI 98          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: UPI0010A9FC8F (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010A9FC8F)

HSP 1 Score: 99.4 bits (246), Expect = 4.960e-25
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG 294
            + QD   + DL+ NA  AA LL  +ANP RL +LC L  GE++VG +A  VDLSQSALSQHLA+LR  ++V TRR  QTIYY +A  +V  VL  + G
Sbjct:    4 IVQDRAGQADLSGNAEQAAQLLAAMANPKRLLILCNLVGGEMAVGALATTVDLSQSALSQHLAKLRALKLVKTRRDAQTIYYSLASEEVQAVLETLYG 101          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A1Y6BFK6_9ALTE (Transcriptional regulator, ArsR family n=1 Tax=Alteromonadaceae bacterium Bs31 TaxID=1304903 RepID=A0A1Y6BFK6_9ALTE)

HSP 1 Score: 99.0 bits (245), Expect = 6.460e-25
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   25 IDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAV 285
            +D+  NA SAA LL+ LANPHRL VLC L + E+SV +I   VDLSQSALSQHLARLR D +V TRR  QTIYY IAD   M ++ V
Sbjct:   13 VDVQKNADSAASLLKNLANPHRLLVLCVLASKEMSVSEINACVDLSQSALSQHLARLRADNLVITRRDSQTIYYSIADGPAMQLIHV 99          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A353PH04_9GAMM (Transcriptional regulator n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353PH04_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 6.540e-25
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   31 LATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAV 285
            ++T+A +AADLL+ LANPHRLQ+LC L  GELSVG +   + LSQSALSQHLA LR D +VATRR+ QTI+YR+     + ++ V
Sbjct:    1 MSTHAHTAADLLKALANPHRLQILCALAEGELSVGALNARIPLSQSALSQHLAVLRKDDLVATRRESQTIFYRVMPGPALDLIQV 85          
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A2E4QVU0_9PROT (ArsR family transcriptional regulator n=1 Tax=Hirschia sp. TaxID=2024835 RepID=A0A2E4QVU0_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 6.650e-25
Identity = 52/83 (62.65%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 DAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIAD 258
            D PS +     A  AA LLR LAN HRL +LC L  GE SVGQ+ +  DLSQSALSQHLA LR D +VATRR+GQ I+YRIAD
Sbjct:    5 DLPSPVAFQEKATLAAGLLRSLANEHRLMILCRLGMGEQSVGQLQEEFDLSQSALSQHLAMLRRDGIVATRREGQVIHYRIAD 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8I0C6K2_9CAUL6.010e-3167.78Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI000422FC4F9.160e-2756.12metalloregulator ArsR/SmtB family transcription fa... [more]
W9BRQ2_9SPHN2.010e-2659.09ArsR family transcriptional regulator n=5 Tax=Sphi... [more]
A0A7L5ZB14_9CAUL2.770e-2657.73Winged helix-turn-helix transcriptional regulator ... [more]
A0A0J7XHR8_9SPHN3.020e-2661.70ArsR family transcriptional regulator n=2 Tax=Sphi... [more]
A0A3E1K9K1_9GAMM1.410e-2560.67ArsR family transcriptional regulator n=1 Tax=Wenz... [more]
UPI0010A9FC8F4.960e-2553.06metalloregulator ArsR/SmtB family transcription fa... [more]
A0A1Y6BFK6_9ALTE6.460e-2562.07Transcriptional regulator, ArsR family n=1 Tax=Alt... [more]
A0A353PH04_9GAMM6.540e-2557.65Transcriptional regulator n=3 Tax=Gammaproteobacte... [more]
A0A2E4QVU0_9PROT6.650e-2562.65ArsR family transcriptional regulator n=1 Tax=Hirs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53265contigP-wetherbeei_contig53265:245..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123256.KB907956_gene3113
PFAMsHTH_5
Model size294
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.56e-27
EggNOG OGsCOG0640@1|root,COG0640@2|Bacteria,1N72Q@1224|Proteobacteria,1SCH5@1236|Gammaproteobacteria,1X7P3@135614|Xanthomonadales
Descriptiontranscriptional
Cds size294
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.4692981-CDS-P-wetherbeei_contig53265:244..5381683186797.4692981-CDS-P-wetherbeei_contig53265:244..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53265 245..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53265.1.1prot_P-wetherbeei_contig53265.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53265 245..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53265.1.1

>prot_P-wetherbeei_contig53265.1.1 ID=prot_P-wetherbeei_contig53265.1.1|Name=mRNA_P-wetherbeei_contig53265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADH
VDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG
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mRNA from alignment at P-wetherbeei_contig53265:245..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53265.1.1 ID=mRNA_P-wetherbeei_contig53265.1.1|Name=mRNA_P-wetherbeei_contig53265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig53265:245..538+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCAGGACGCCCCATCCAAAATCGACCTCGCGACGAACGCCAGATC GGCGGCCGATCTGCTGCGGGTCCTGGCCAACCCGCACCGTCTGCAGGTGC TCTGCGGGCTGCGGACGGGCGAGCTGTCCGTCGGACAGATCGCCGACCAT GTGGACCTGTCGCAGTCGGCCCTGTCCCAGCACCTGGCGCGTCTGAGGCT TGACCGGGTTGTCGCGACCCGGCGGCAGGGACAGACCATCTACTATCGCA TCGCCGATCCTGACGTGATGACAGTCCTTGCGGTCGTCTCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53265:245..538+

>mRNA_P-wetherbeei_contig53265.1.1 ID=mRNA_P-wetherbeei_contig53265.1.1|Name=mRNA_P-wetherbeei_contig53265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig53265:245..538+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCAGGACGCCCCATCCAAAATCGACCTCGCGACGAACGCCAGATC
GGCGGCCGATCTGCTGCGGGTCCTGGCCAACCCGCACCGTCTGCAGGTGC
TCTGCGGGCTGCGGACGGGCGAGCTGTCCGTCGGACAGATCGCCGACCAT
GTGGACCTGTCGCAGTCGGCCCTGTCCCAGCACCTGGCGCGTCTGAGGCT
TGACCGGGTTGTCGCGACCCGGCGGCAGGGACAGACCATCTACTATCGCA
TCGCCGATCCTGACGTGATGACAGTCCTTGCGGTCGTCTCCGGC
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