mRNA_P-wetherbeei_contig53265.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A8I0C6K2_9CAUL (Helix-turn-helix transcriptional regulator n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A8I0C6K2_9CAUL) HSP 1 Score: 114 bits (285), Expect = 6.010e-31 Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 10 DAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVL 279
DAP DLA A AADLLR+LAN RLQ+LC LR+GE SVG++A V LS SALSQHLARLR D +VA RR+ QTI+YRIADPDVM +L
Sbjct: 3 DAPPLEDLARRAAGAADLLRLLANERRLQILCVLRSGERSVGELAAAVGLSPSALSQHLARLRADHLVAPRRRAQTIFYRIADPDVMRLL 92
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: UPI000422FC4F (metalloregulator ArsR/SmtB family transcription factor n=2 Tax=Solimonas TaxID=413435 RepID=UPI000422FC4F) HSP 1 Score: 103 bits (257), Expect = 9.160e-27 Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 1 MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG 294
+T++A ++ +AT+A AA LLR LA+PHRLQVLC L GE SVG++ V LSQSALSQHLARLR + +V+TRR+GQTIYY +AD + V+ + G
Sbjct: 4 VTEEAAAQ--MATHAEEAAQLLRALASPHRLQVLCALAGGEHSVGELNARVGLSQSALSQHLARLRDEGLVSTRREGQTIYYALADGPALAVIEALHG 99
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: W9BRQ2_9SPHN (ArsR family transcriptional regulator n=5 Tax=Sphingomonadales TaxID=204457 RepID=W9BRQ2_9SPHN) HSP 1 Score: 102 bits (255), Expect = 2.010e-26 Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 31 LATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG 294
+A A AA +LR+LANPHRLQVLC L GE+SVG + V LSQSALSQHLARLR + +V TRR+G +I+YRIADP V+ ++ V++
Sbjct: 14 MAAKAEEAAHMLRLLANPHRLQVLCLLVEGEMSVGAVQQQVALSQSALSQHLARLREEGLVETRREGTSIFYRIADPAVLQIMQVLAA 101
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A7L5ZB14_9CAUL (Winged helix-turn-helix transcriptional regulator n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A7L5ZB14_9CAUL) HSP 1 Score: 102 bits (254), Expect = 2.770e-26 Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1 MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVS 291
+T DAP+ L +A AA LL+ LAN HRL +LC L TGE+ V QI V LSQSALSQHLARLR D +VATRR+G I+YRI DP V+ V+A ++
Sbjct: 2 ITADAPTLDALEQSAAHAAALLKSLANEHRLMILCQLGTGEMQVAQILSGVKLSQSALSQHLARLREDGLVATRREGVAIFYRIDDPAVLKVIATLA 98
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A0J7XHR8_9SPHN (ArsR family transcriptional regulator n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A0J7XHR8_9SPHN) HSP 1 Score: 102 bits (254), Expect = 3.020e-26 Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 19 SKIDLAT---NARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVS 291
+K DL T NA AA LLRVLAN RL +LC L GELSVGQI V LSQSALSQHLA LR + +VATRR QTIYYRI DP + V+A ++
Sbjct: 5 AKFDLTTFEANAARAATLLRVLANERRLMILCQLADGELSVGQIQPRVGLSQSALSQHLALLREEGIVATRRAAQTIYYRIVDPAALRVIATLA 98
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A3E1K9K1_9GAMM (ArsR family transcriptional regulator n=1 Tax=Wenzhouxiangella sediminis TaxID=1792836 RepID=A0A3E1K9K1_9GAMM) HSP 1 Score: 100 bits (250), Expect = 1.410e-25 Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 16 PSKIDLATN-ARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVL 279
P DL ++ AR AA LLR LANP RL +LC L GE SVG++ + + +SQSALSQHLARLR +++VATRRQ QTIYYRIADP V+ ++
Sbjct: 10 PDLADLDSDQARQAATLLRALANPTRLMLLCSLVEGEHSVGELNERIPMSQSALSQHLARLREEQLVATRRQSQTIYYRIADPMVLELI 98
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: UPI0010A9FC8F (metalloregulator ArsR/SmtB family transcription factor n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010A9FC8F) HSP 1 Score: 99.4 bits (246), Expect = 4.960e-25 Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1
Query: 1 MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAVVSG 294
+ QD + DL+ NA AA LL +ANP RL +LC L GE++VG +A VDLSQSALSQHLA+LR ++V TRR QTIYY +A +V VL + G
Sbjct: 4 IVQDRAGQADLSGNAEQAAQLLAAMANPKRLLILCNLVGGEMAVGALATTVDLSQSALSQHLAKLRALKLVKTRRDAQTIYYSLASEEVQAVLETLYG 101
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A1Y6BFK6_9ALTE (Transcriptional regulator, ArsR family n=1 Tax=Alteromonadaceae bacterium Bs31 TaxID=1304903 RepID=A0A1Y6BFK6_9ALTE) HSP 1 Score: 99.0 bits (245), Expect = 6.460e-25 Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 25 IDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAV 285
+D+ NA SAA LL+ LANPHRL VLC L + E+SV +I VDLSQSALSQHLARLR D +V TRR QTIYY IAD M ++ V
Sbjct: 13 VDVQKNADSAASLLKNLANPHRLLVLCVLASKEMSVSEINACVDLSQSALSQHLARLRADNLVITRRDSQTIYYSIADGPAMQLIHV 99
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A353PH04_9GAMM (Transcriptional regulator n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353PH04_9GAMM) HSP 1 Score: 98.6 bits (244), Expect = 6.540e-25 Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 31 LATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIADPDVMTVLAV 285
++T+A +AADLL+ LANPHRLQ+LC L GELSVG + + LSQSALSQHLA LR D +VATRR+ QTI+YR+ + ++ V
Sbjct: 1 MSTHAHTAADLLKALANPHRLQILCALAEGELSVGALNARIPLSQSALSQHLAVLRKDDLVATRRESQTIFYRVMPGPALDLIQV 85
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Match: A0A2E4QVU0_9PROT (ArsR family transcriptional regulator n=1 Tax=Hirschia sp. TaxID=2024835 RepID=A0A2E4QVU0_9PROT) HSP 1 Score: 99.0 bits (245), Expect = 6.650e-25 Identity = 52/83 (62.65%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 10 DAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHVDLSQSALSQHLARLRLDRVVATRRQGQTIYYRIAD 258
D PS + A AA LLR LAN HRL +LC L GE SVGQ+ + DLSQSALSQHLA LR D +VATRR+GQ I+YRIAD
Sbjct: 5 DLPSPVAFQEKATLAAGLLRSLANEHRLMILCRLGMGEQSVGQLQEEFDLSQSALSQHLAMLRRDGIVATRREGQVIHYRIAD 87 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig53265.1.1 >prot_P-wetherbeei_contig53265.1.1 ID=prot_P-wetherbeei_contig53265.1.1|Name=mRNA_P-wetherbeei_contig53265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp MTQDAPSKIDLATNARSAADLLRVLANPHRLQVLCGLRTGELSVGQIADHback to top mRNA from alignment at P-wetherbeei_contig53265:245..538+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig53265.1.1 ID=mRNA_P-wetherbeei_contig53265.1.1|Name=mRNA_P-wetherbeei_contig53265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig53265:245..538+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig53265:245..538+ >mRNA_P-wetherbeei_contig53265.1.1 ID=mRNA_P-wetherbeei_contig53265.1.1|Name=mRNA_P-wetherbeei_contig53265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig53265:245..538+ (Phaeothamnion wetherbeei SAG_119_79)back to top |