mRNA_P-wetherbeei_contig52730.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52730.1.1
Unique NamemRNA_P-wetherbeei_contig52730.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52730.1.1 vs. uniprot
Match: A0A7Z9UCG8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UCG8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 5.320e-20
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 1
Query:    1 RILLGRCLMSIQRTQMFRTYGSSSVVHYAINWLGCSRDEAYDVLLVAKRLEGLPLMTKAAENGQVGWCALRAVLRRATPENEEMWLEEAQNSSMNRLLWLLRNDGSPEAEREADLVR------LELYLPTAVSQMFQRATRRICQSEGRRVPAAEVF 453
            ++ LGRCL++I+ T+ F+ +G  S  HYA+  LG +R EA D   VA+ L  LP ++  AE G++ W  LR ++R+A+ E EE+WL+ AQ  +  ++  L+          E DL        L   L     +M + ATR    + GR V  AEV 
Sbjct:   40 KLTLGRCLLAIEETEDFKKFGCCSSTHYAVAKLGVNRKEANDCKRVARELLRLPELSLVAEEGRISWGKLREIVRKASLETEELWLQLAQKYNDQQIQILVSKTPPGAVPGEVDLEDNAYNSLLRCPLSPQAYRMLEEATRAYSIARGRLVTKAEVI 196          
BLAST of mRNA_P-wetherbeei_contig52730.1.1 vs. uniprot
Match: A0A7Z9PZF7_9BACT (HNH endonuclease n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PZF7_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 1.160e-17
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = 1
Query:    1 RILLGRCLMSIQRTQMFRTYGSSSVVHYAINWLGCSRDEAYDVLLVAKRLEGLPLMTKAAENGQVGWCALRAVLRRATPENEEMWLEEAQNSSMNRLLWLLRNDGSPEAEREADLVR------LELYLPTAVSQMFQRATRRICQSEGRRVPAAEVF 453
            ++ LGRCL++IQ T+ F+ +G SS  HYA   LG SR EA +   VA+ L  LP +T AAE G++ W  LR ++R A+PE +E WLE ++  + N++  L+          + DL        L+  L   +S M  RA R     +      AEV 
Sbjct:   39 KLTLGRCLLAIQETRDFKNFGCSSSTHYACAKLGMSRREANECKRVARALMPLPELTLAAEEGRIAWGKLREIVRVASPETDEFWLELSKRYTDNQVQILVSRTPDGCIPGDVDLAESLSRSVLKCPLDAHLSLMLDRAMRVHSLKKNEASTLAEVL 195          
BLAST of mRNA_P-wetherbeei_contig52730.1.1 vs. uniprot
Match: A0A534WG24_9DELT (HNH endonuclease n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534WG24_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 3.260e-9
Identity = 41/161 (25.47%), Postives = 76/161 (47.20%), Query Frame = 1
Query:    1 RILLGRCLMSIQRTQMFRTYGSSSVVHYAINWLGCSRDEAYDVLLVAKRLEGLPLMTKAAENGQVGWCALRAVLRRATPENEEMWLEEAQNSSMNRLLWLLRN----DGSPEAEREADLVRLELYLPTAVSQMFQRATRRICQSEGRRVPAAEVFELVLAD 471
            R++LGR   +    +  +  G + +  YA   LG S  E   +  V+ RLEGLP + +A ENG+V W  +R ++  ATP+ E  WL  A+  ++  L   +R     +G  + + E   +R  +  P  + ++++       +  G  +   +  E + A+
Sbjct:   45 RMVLGRLARAFLHVRGQQGLGFARLGDYARERLGMSARELQSLARVSARLEGLPEIRRAYENGEVSWAQVRLLIGVATPDTEGGWLALARGRTVRALAARIRGVRGGEGGEDDDAEEPHIRFRVRCPRRLPRVWRDTVELARRMAGTELTVGQAAEAIAAE 205          
BLAST of mRNA_P-wetherbeei_contig52730.1.1 vs. uniprot
Match: A0A534ZIA1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534ZIA1_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 2.020e-6
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 RILLGRCLMSIQRTQMFRTYGSSSVVHYAINWLGCSRDEAYDVLLVAKRLEGLPLMTKAAENGQVGWCALRAVLRRATPENEEMWLEEAQ 270
            R++LGR   +    +  +  G + +  YA   LG S  E   +  V+ RLEGLP + +A ENG+V W  +R ++  ATP+ E  WL  A+
Sbjct:   45 RMVLGRLGRAFLHVRGQQGLGFARLGDYARERLGMSARELQSLARVSARLEGLPEIRRAYENGEVSWAQVRLLIGVATPDTEGGWLALAR 134          
BLAST of mRNA_P-wetherbeei_contig52730.1.1 vs. uniprot
Match: A0A356KLN5_9BACT (HNHc domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KLN5_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 5.840e-5
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 1
Query:   22 LMSIQRTQMFRTYGSSSVVHYAINWLGCSRDEAYDVLLVAKRLEGLPLMTKAAENGQVGWCALRAVLRRATPENEEMWLEEAQNSSMNRL 291
            L  ++R Q++R  G SS+  YA   LG S  +  D++ + +R++ L  +  A   GQ+ +     V R ATPENE+ WL +A    +  L
Sbjct:   84 LAEMERAQLWRALGYSSLSRYAFEVLGYSSSKTSDLVRIGRRVD-LEKLQDAFRQGQLSYKFATEVARVATPENEDEWLAKADELPLRDL 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52730.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Z9UCG8_9BACT5.320e-2035.03Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A7Z9PZF7_9BACT1.160e-1735.67HNH endonuclease n=1 Tax=Phycisphaerales bacterium... [more]
A0A534WG24_9DELT3.260e-925.47HNH endonuclease n=2 Tax=Deltaproteobacteria bacte... [more]
A0A534ZIA1_9DELT2.020e-635.56Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A356KLN5_9BACT5.840e-533.33HNHc domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52730contigP-wetherbeei_contig52730:32..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog326424.FRAAL2156
PFAMsDUF222,HNH
Model size471
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.63e-05
EggNOG OGsCOG1403@1|root,COG1403@2|Bacteria,2HAHI@201174|Actinobacteria,4ESDB@85013|Frankiales
DescriptionEvidence 5 No homology to any previously reported sequences
Cds size447
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.2496252-CDS-P-wetherbeei_contig52730:31..4781683186790.2496252-CDS-P-wetherbeei_contig52730:31..478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52730 32..478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.262918-UTR-P-wetherbeei_contig52730:478..5021683186790.262918-UTR-P-wetherbeei_contig52730:478..502Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52730 479..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52730.1.1prot_P-wetherbeei_contig52730.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52730 32..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52730.1.1

>prot_P-wetherbeei_contig52730.1.1 ID=prot_P-wetherbeei_contig52730.1.1|Name=mRNA_P-wetherbeei_contig52730.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MSIQRTQMFRTYGSSSVVHYAINWLGCSRDEAYDVLLVAKRLEGLPLMTK
AAENGQVGWCALRAVLRRATPENEEMWLEEAQNSSMNRLLWLLRNDGSPE
AEREADLVRLELYLPTAVSQMFQRATRRICQSEGRRVPAAEVFELVLAD
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mRNA from alignment at P-wetherbeei_contig52730:32..502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52730.1.1 ID=mRNA_P-wetherbeei_contig52730.1.1|Name=mRNA_P-wetherbeei_contig52730.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig52730:32..502- (Phaeothamnion wetherbeei SAG_119_79)
CGGATTTTGTTGGGCCGCTGTCTGATGTCGATCCAGCGGACGCAGATGTT TCGCACCTACGGGTCGAGTTCGGTGGTACACTACGCGATCAACTGGTTGG GGTGTTCGCGCGATGAGGCTTACGATGTGCTCCTGGTAGCGAAGCGGTTG GAGGGGCTGCCGCTGATGACAAAGGCGGCGGAAAATGGGCAGGTGGGTTG GTGCGCTTTGCGGGCGGTATTGCGACGCGCGACGCCCGAGAATGAGGAGA TGTGGCTCGAAGAAGCTCAGAACTCTTCGATGAACCGGCTGCTCTGGCTG TTGCGCAACGATGGTTCTCCGGAAGCAGAGCGTGAGGCGGACCTGGTGAG GCTGGAGCTCTATCTGCCCACGGCGGTTTCGCAGATGTTTCAGCGGGCGA CCCGCCGGATTTGCCAGAGCGAGGGCCGCCGGGTGCCCGCAGCGGAAGTA TTCGAGCTGGTGCTGGCCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52730:32..502-

>mRNA_P-wetherbeei_contig52730.1.1 ID=mRNA_P-wetherbeei_contig52730.1.1|Name=mRNA_P-wetherbeei_contig52730.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig52730:32..502- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATCCAGCGGACGCAGATGTTTCGCACCTACGGGTCGAGTTCGGT
GGTACACTACGCGATCAACTGGTTGGGGTGTTCGCGCGATGAGGCTTACG
ATGTGCTCCTGGTAGCGAAGCGGTTGGAGGGGCTGCCGCTGATGACAAAG
GCGGCGGAAAATGGGCAGGTGGGTTGGTGCGCTTTGCGGGCGGTATTGCG
ACGCGCGACGCCCGAGAATGAGGAGATGTGGCTCGAAGAAGCTCAGAACT
CTTCGATGAACCGGCTGCTCTGGCTGTTGCGCAACGATGGTTCTCCGGAA
GCAGAGCGTGAGGCGGACCTGGTGAGGCTGGAGCTCTATCTGCCCACGGC
GGTTTCGCAGATGTTTCAGCGGGCGACCCGCCGGATTTGCCAGAGCGAGG
GCCGCCGGGTGCCCGCAGCGGAAGTATTCGAGCTGGTGCTGGCCGAC
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