mRNA_P-wetherbeei_contig52244.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52244.1.1
Unique NamemRNA_P-wetherbeei_contig52244.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: A0A6N7GLY9_9HYPH (NUDIX domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GLY9_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 3.680e-9
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 GPARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKSHRE 141
            GP REL RD+KAV WLPL KAI  L+R HE+ FLA+ GP  +K+ ++
Sbjct:   97 GPVRELTRDVKAVKWLPLKKAIDTLSRAHEKVFLANVGPVVVKAAKQ 143          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI001BAA35D6 (NUDIX hydrolase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAA35D6)

HSP 1 Score: 57.4 bits (137), Expect = 1.850e-8
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKSHRETTAIRALPPTDTRAPEPAPI 201
            P R+LMRD+KAV WLPLA AI +L+R +E+AFL + GP A+ +   T +      T  RAPEP  I
Sbjct:   93 PVRKLMRDVKAVEWLPLADAIERLSRGYERAFLENVGPIAMAAQHATPSG-----TVERAPEPVRI 153          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI001BA5D8CE (NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0169 TaxID=2807663 RepID=UPI001BA5D8CE)

HSP 1 Score: 56.2 bits (134), Expect = 5.170e-8
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKS 132
            P RELMRD+KAV WLPLA AI +L+R +E+AFL + GP A+ +
Sbjct:   93 PVRELMRDVKAVEWLPLADAIERLSRGYERAFLENVGPIALSA 135          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI0009FA92E1 (NUDIX hydrolase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI0009FA92E1)

HSP 1 Score: 55.1 bits (131), Expect = 1.870e-7
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKSHRETTAIRALPP 168
            PA ELMRD+KAV WLPLA A+ +L+R +E+AFL + GP A+ +       RA  P
Sbjct:   93 PAHELMRDVKAVDWLPLADAVDRLSRGYERAFLENVGPIALAAAAHARKARAKQP 147          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI001BA4ACDA (NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0182 TaxID=2807667 RepID=UPI001BA4ACDA)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKSHR 138
            P R+LMRD+KAV WLPLA A+ +L+R +E+AFL + GP A+ + R
Sbjct:   93 PVRKLMRDVKAVEWLPLADAVERLSRGYERAFLENVGPIAMAAGR 137          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI001BA8B69B (NUDIX hydrolase n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA8B69B)

HSP 1 Score: 53.9 bits (128), Expect = 3.850e-7
Identity = 22/43 (51.16%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKS 132
            P R+LM D++AV WLPL +A+++L+R HE+AFL + GP A+++
Sbjct:   93 PVRKLMSDVRAVEWLPLERAVKRLSRDHERAFLENVGPIALQA 135          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI00110E555A (NUDIX hydrolase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110E555A)

HSP 1 Score: 53.9 bits (128), Expect = 3.960e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 GPARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKS 132
            GP R+LMRD+KAV WLPL +A+ +L+  +E+AFL + GP A+ S
Sbjct:   92 GPVRKLMRDVKAVDWLPLGQAVARLSHGYERAFLENVGPIALAS 135          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI001FF874F5 (NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. 190 TaxID=2782658 RepID=UPI001FF874F5)

HSP 1 Score: 53.5 bits (127), Expect = 4.570e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAI 126
            P RELMRD+KAV WLPL +A+ +L+R +E+AFL   GP A+
Sbjct:   87 PVRELMRDVKAVDWLPLGEAVERLSRGYERAFLQHVGPIAL 127          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI000D37C4D5 (NUDIX hydrolase n=1 Tax=Bradyrhizobium algeriense TaxID=634784 RepID=UPI000D37C4D5)

HSP 1 Score: 54.3 bits (129), Expect = 5.390e-7
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 GPARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKSHRETTAIRALPPTDTRAPEPAP 198
            G   ELMRD+KAV WLPLA A+ +L+R +E+AFL + GP A+ +       R       RA +PAP
Sbjct:   92 GAVHELMRDVKAVDWLPLADAVDRLSRDYERAFLENVGPIALSAAAHAATTR-----KARAKQPAP 152          
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Match: UPI001BA74831 (NUDIX hydrolase n=6 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA74831)

HSP 1 Score: 53.5 bits (127), Expect = 5.460e-7
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    4 PARELMRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAI 126
            P R+LMRD+KAV WLPLA A+ +L+R +E+AFL + GP A+
Sbjct:   93 PVRKLMRDVKAVEWLPLADAVERLSRGYERAFLENVGPIAM 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52244.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GLY9_9HYPH3.680e-957.45NUDIX domain-containing protein n=1 Tax=Hyphomicro... [more]
UPI001BAA35D61.850e-850.00NUDIX hydrolase n=1 Tax=unclassified Bradyrhizobiu... [more]
UPI001BA5D8CE5.170e-860.47NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. AUGA SZ... [more]
UPI0009FA92E11.870e-750.91NUDIX hydrolase n=2 Tax=Bradyrhizobium TaxID=374 R... [more]
UPI001BA4ACDA1.990e-755.56NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. AUGA SZ... [more]
UPI001BA8B69B3.850e-751.16NUDIX hydrolase n=1 Tax=Bradyrhizobium jicamae Tax... [more]
UPI00110E555A3.960e-754.55NUDIX hydrolase n=1 Tax=unclassified Bradyrhizobiu... [more]
UPI001FF874F54.570e-758.54NUDIX hydrolase n=1 Tax=Bradyrhizobium sp. 190 Tax... [more]
UPI000D37C4D55.390e-745.45NUDIX hydrolase n=1 Tax=Bradyrhizobium algeriense ... [more]
UPI001BA748315.460e-758.54NUDIX hydrolase n=6 Tax=Bradyrhizobium TaxID=374 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52244contigP-wetherbeei_contig52244:1..207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog316056.RPC_4436
PFAMsNUDIX
Model size207
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03574
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.89e-06
EggNOG OGsCOG1051@1|root,COG1051@2|Bacteria,1R5RJ@1224|Proteobacteria,2U1BJ@28211|Alphaproteobacteria,3JV0X@41294|Bradyrhizobiaceae
EC3.6.1.55
DescriptionNUDIX domain
Cds size189
COG categoryF
BRITEko00000,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.522047-UTR-P-wetherbeei_contig52244:0..181683186783.522047-UTR-P-wetherbeei_contig52244:0..18Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52244 1..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.5313854-CDS-P-wetherbeei_contig52244:18..2071683186783.5313854-CDS-P-wetherbeei_contig52244:18..207Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52244 19..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52244.1.1prot_P-wetherbeei_contig52244.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52244 19..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52244.1.1

>prot_P-wetherbeei_contig52244.1.1 ID=prot_P-wetherbeei_contig52244.1.1|Name=mRNA_P-wetherbeei_contig52244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MRDIKAVAWLPLAKAIRKLARPHEQAFLASAGPAAIKSHRETTAIRALPP
TDTRAPEPAPIAP
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mRNA from alignment at P-wetherbeei_contig52244:1..207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52244.1.1 ID=mRNA_P-wetherbeei_contig52244.1.1|Name=mRNA_P-wetherbeei_contig52244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig52244:1..207+ (Phaeothamnion wetherbeei SAG_119_79)
GGACCGGCGCGCGAACTGATGCGCGACATCAAAGCAGTGGCCTGGCTGCC GCTCGCCAAAGCGATCCGCAAGCTGGCGCGACCGCACGAGCAGGCCTTCC TCGCCAGCGCGGGCCCCGCTGCGATCAAGTCGCACCGGGAGACCACGGCG ATCAGGGCTTTGCCGCCGACCGATACGCGAGCGCCGGAACCGGCGCCGAT CGCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52244:1..207+

>mRNA_P-wetherbeei_contig52244.1.1 ID=mRNA_P-wetherbeei_contig52244.1.1|Name=mRNA_P-wetherbeei_contig52244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig52244:1..207+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGACATCAAAGCAGTGGCCTGGCTGCCGCTCGCCAAAGCGATCCG
CAAGCTGGCGCGACCGCACGAGCAGGCCTTCCTCGCCAGCGCGGGCCCCG
CTGCGATCAAGTCGCACCGGGAGACCACGGCGATCAGGGCTTTGCCGCCG
ACCGATACGCGAGCGCCGGAACCGGCGCCGATCGCGCCG
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