mRNA_P-wetherbeei_contig52006.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52006.1.1
Unique NamemRNA_P-wetherbeei_contig52006.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A382U8R9_9ZZZZ (B12-binding domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382U8R9_9ZZZZ)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-17
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 MLIYLADTVHGAGQLNPDTVPYNVARIASYARSRHPEHEYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDR-DRAAYARYSMEHPYVDFVVIEEGE 366
            MLIYLAD  +     N   +P NV  IA+Y +++HPE    +FK+P  L+D + N  PD+LALSHY WN+ L+  I ++ ++   + + V GGPN +  D      +  E   +D  +  EGE
Sbjct:    1 MLIYLADLCYFHTWDNIQPLPLNVGYIAAYLKNKHPEVSIEIFKDPIKLMDRISNKPPDILALSHYEWNSNLDLAILKHMKQKNVNTITVMGGPNFNAVDLDWIHNFFQERSNLDAYIYGEGE 123          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A2E0D4N8_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E0D4N8_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 4.380e-17
Identity = 49/123 (39.84%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 MLIYLADTVHGAGQLNPDTVPYNVARIASYARSRHPEHEYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDR-DRAAYARYSMEHPYVDFVVIEEGE 366
            M IYLAD  +     N   +P NV  IA+Y +++HPE    +FK+P  L+D +    PDVLALSHY WN+ L+  I ++ +E  PD L V GGPN +  D      +  +  ++D  V  EGE
Sbjct:    1 MQIYLADLCYFHDWDNIQPLPLNVGYIAAYLKNKHPEILVEIFKDPKKLMDRISKNPPDVLALSHYNWNSNLDLAILKHMKEKNPDTLTVMGGPNFNGVDFDWIHDFFQKRSHLDAYVYGEGE 123          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A0M9DVW2_9DELT (Radical SAM superfamily protein (Fragment) n=1 Tax=Candidatus Magnetomorum sp. HK-1 TaxID=1509431 RepID=A0A0M9DVW2_9DELT)

HSP 1 Score: 83.2 bits (204), Expect = 2.710e-16
Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 MLIYLADTVHGAGQLNPDTVPYNVARIASYARSRH-PEHEYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            M IYLAD V+   Q N   VP NVA IA+Y    +  E +  LFK P  L   ++   PD+L LSHY WNTRLNH   +  +   P    + GGPN+  +      Y   HP +D  +  EGE
Sbjct:    1 MKIYLADLVYDTVQTNY-VVPLNVAYIAAYLDQIYGDELDITLFKYPKQLEKAIKETPPDILGLSHYSWNTRLNHLFMKLVKHFNPQTHTIMGGPNIRTEPDELKNYLRNHPALDCYIPFEGE 122          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: UPI001BC6A5DB (Cobalamin-dependent protein n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC6A5DB)

HSP 1 Score: 82.8 bits (203), Expect = 5.200e-16
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   13 LADTVHGAGQLNPDTVPYNVARIASYARSRHPEH-EYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            +AD V+   + N   VP NVA +A+Y + ++    + ++FK P  L  +++NC PD+L LS+Y WN RLN      A+   P ++ V GGPN+  DRA    Y   +  +D+ ++ EGE
Sbjct:    1 MADLVYDTVRTNY-VVPLNVAYLAAYTKEKYGRDVDIKIFKYPLELEKKIKNCPPDILGLSNYSWNERLNQVFMELAKRQNPKVITVMGGPNIRTDRAGIEAYLSVNSLLDYYILFEGE 118          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A3R6ZWN5_9BACT (B12-binding domain-containing protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3R6ZWN5_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 9.710e-16
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    7 IYLADTVHGA-GQLNPDTVPYNVARIASYARSR-HPEHEYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            IYL++ +H   G+ + + VP N+  +ASY R    P  + RLF  P  L   L +  PD+LA+S+Y WN RLN   A YA+ L P+ + + GGPN          +  + P VDF + +EGE
Sbjct:    8 IYLSNLIHVRDGKYSVEGVPLNIGCLASYLRQEITPSLDLRLFALPEKLEKTLSDEAPDILAVSNYIWNARLNALFAAYAKSLNPETVTIMGGPNFPGSAERRLDFLTKLPQVDFYIPDEGE 129          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: UPI001A900BE7 (cobalamin-dependent protein n=2 Tax=Sneathiella TaxID=510690 RepID=UPI001A900BE7)

HSP 1 Score: 79.7 bits (195), Expect = 6.260e-15
Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    7 IYLADTVHGAGQLNPDTVPYNVARIASYARSRHPEH-EYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            IYLAD  H    L+ +  P ++  +A+Y   + P+  +  LFK P  L   L    PDV+  ++Y WN  ++ + AR  ++L+P+ ++V GGPN        + +   +P +DF V++EGE
Sbjct:    6 IYLADLTHNGLVLSSNVFPLSIGLVAAYLLEKKPDGVDVELFKYPEDLSAALDKAVPDVIGFANYSWNMDISRQYARVIKKLWPETVVVFGGPNYGLSDGEVSEFWRNNPNIDFHVVQEGE 126          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A382IZW1_9ZZZZ (B12-binding domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382IZW1_9ZZZZ)

HSP 1 Score: 75.1 bits (183), Expect = 1.210e-13
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 MLIYLADTVHGAGQLNPDTVPYNVARIASYARSRHPEH-EYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            ++IYLA   H    ++   VPYN+A IASY +S+  +  E  LF N   L++ +R   P +L LS Y WN  L  ++    R+  PD + V GGP++ R   +Y +   ++  +D V ++ GE
Sbjct:    7 LIIYLAHLDH-PNFIHRIAVPYNIACIASYCKSKFGKDIEISLFTNVENLMESMRTKPPHILGLSFYMWNVNLVQQVIECCRQTNPDTITVIGGPSVSRILDSYKKLLSQNRGLDIVSLDHGE 128          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A0J6YZ86_9BACT (B12-binding domain-containing protein n=1 Tax=Candidatus Nitromaritima sp. SCGC AAA799-A02 TaxID=1628278 RepID=A0A0J6YZ86_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 1.400e-13
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:    7 IYLADTVHGAGQLNPDTVPYNVARIASYARSR-HPEHEYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            I +AD  H    ++  T P     +ASYA+     E   +LFK P      +    P V+A S++ WN  LN++I   A+E+YP+I+ + GGPN    +    +Y   +  +DF + EEGE
Sbjct:    4 ILIADLTHLGQGIHAPTFPLGAGCVASYAQEALKSEFNIKLFKFPEPFFKAILEESPVVIAFSNFSWNKNLNYKICSLAKEIYPNIVTIFGGPNFPTSQKEKFQYLNSYSNIDFYIQEEGE 124          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: A0A3R7S9Z9_9PROT (Radical SAM protein n=2 Tax=Pelagibacteraceae TaxID=1655514 RepID=A0A3R7S9Z9_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 4.850e-13
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   43 LNPDTVPYNVARIASYARSRHPEHEYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            L+   VP     +A++A+  +PE    ++K     ++E++   PDVL L++Y WN  L  RIA+ A+++ P ILIV GGP +D+  A  +  + ++   DF +  EGE
Sbjct:   26 LSTPVVPLGAGXVAAHAKXXNPEIXVSVYKGITPXIEEIKKXPPDVLGLTNYVWNNNLAIRIAKVAKKINPKILIVFGGPEIDKSPANKSIMNDKYKIADFFIQYEGE 133          
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Match: UPI00146F2E63 (cobalamin-dependent protein n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI00146F2E63)

HSP 1 Score: 73.9 bits (180), Expect = 6.600e-13
Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = 1
Query:    7 IYLADTVHGAGQLNPDTVPYNVARIASYARSRHPEH-EYRLFKNPHILLDELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDRAAYARYSMEHPYVDFVVIEEGE 366
            IYLAD  H    L+ +  P ++  + +Y   R P+     LFK P  L   L    PD++  ++Y WN  L  + A+  ++L+P+ +IV GGPN        A +   +P +DF V  EGE
Sbjct:    6 IYLADLTHNGLVLSSNVFPLSIGLVGAYLLDRKPDEVSLELFKYPEDLSQALETEVPDIVGFANYSWNYDLARQYAKTIKKLWPETVIVFGGPNYGLTDEEIAAFWKRNPDIDFHVAREGE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A382U8R9_9ZZZZ1.040e-1737.40B12-binding domain-containing protein (Fragment) n... [more]
A0A2E0D4N8_9CHLR4.380e-1739.84Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A0M9DVW2_9DELT2.710e-1639.84Radical SAM superfamily protein (Fragment) n=1 Tax... [more]
UPI001BC6A5DB5.200e-1636.13Cobalamin-dependent protein n=1 Tax=Sulfuricella s... [more]
A0A3R6ZWN5_9BACT9.710e-1637.70B12-binding domain-containing protein n=1 Tax=Cand... [more]
UPI001A900BE76.260e-1532.23cobalamin-dependent protein n=2 Tax=Sneathiella Ta... [more]
A0A382IZW1_9ZZZZ1.210e-1334.15B12-binding domain-containing protein (Fragment) n... [more]
A0A0J6YZ86_9BACT1.400e-1333.06B12-binding domain-containing protein n=1 Tax=Cand... [more]
A0A3R7S9Z9_9PROT4.850e-1334.26Radical SAM protein n=2 Tax=Pelagibacteraceae TaxI... [more]
UPI00146F2E636.600e-1333.06cobalamin-dependent protein n=1 Tax=Sneathiella aq... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52006contigP-wetherbeei_contig52006:184..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog395494.Galf_1097
PFAMsB12-binding,Radical_SAM
Model size366
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.75e-13
EggNOG OGsCOG1032@1|root,COG1032@2|Bacteria,1Q5NG@1224|Proteobacteria,2WB3N@28216|Betaproteobacteria,44WNP@713636|Nitrosomonadales
DescriptionSMART Elongator protein 3 MiaB NifB
Cds size366
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.2936988-CDS-P-wetherbeei_contig52006:183..5491683186780.2936988-CDS-P-wetherbeei_contig52006:183..549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52006 184..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52006.1.1prot_P-wetherbeei_contig52006.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52006 184..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52006.1.1

>prot_P-wetherbeei_contig52006.1.1 ID=prot_P-wetherbeei_contig52006.1.1|Name=mRNA_P-wetherbeei_contig52006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MLIYLADTVHGAGQLNPDTVPYNVARIASYARSRHPEHEYRLFKNPHILL
DELRNCRPDVLALSHYFWNTRLNHRIARYARELYPDILIVTGGPNLDRDR
AAYARYSMEHPYVDFVVIEEGE
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mRNA from alignment at P-wetherbeei_contig52006:184..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52006.1.1 ID=mRNA_P-wetherbeei_contig52006.1.1|Name=mRNA_P-wetherbeei_contig52006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig52006:184..549+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGATCTATCTGGCGGACACTGTGCACGGGGCGGGCCAGCTCAACCC CGATACGGTTCCCTACAACGTCGCTCGTATCGCATCTTATGCGCGATCCC GGCATCCGGAGCACGAATACCGGCTCTTCAAGAATCCTCACATTCTCCTC GACGAGTTGCGGAATTGCCGGCCGGATGTGCTGGCGCTATCCCACTATTT CTGGAACACGCGGCTGAACCATCGGATCGCGCGCTACGCGCGAGAGCTGT ATCCCGACATTCTAATCGTCACGGGCGGCCCCAATCTCGATCGTGATCGC GCAGCCTATGCGCGCTATTCGATGGAGCATCCGTACGTTGATTTTGTAGT GATCGAGGAGGGTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52006:184..549+

>mRNA_P-wetherbeei_contig52006.1.1 ID=mRNA_P-wetherbeei_contig52006.1.1|Name=mRNA_P-wetherbeei_contig52006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig52006:184..549+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGATCTATCTGGCGGACACTGTGCACGGGGCGGGCCAGCTCAACCC
CGATACGGTTCCCTACAACGTCGCTCGTATCGCATCTTATGCGCGATCCC
GGCATCCGGAGCACGAATACCGGCTCTTCAAGAATCCTCACATTCTCCTC
GACGAGTTGCGGAATTGCCGGCCGGATGTGCTGGCGCTATCCCACTATTT
CTGGAACACGCGGCTGAACCATCGGATCGCGCGCTACGCGCGAGAGCTGT
ATCCCGACATTCTAATCGTCACGGGCGGCCCCAATCTCGATCGTGATCGC
GCAGCCTATGCGCGCTATTCGATGGAGCATCCGTACGTTGATTTTGTAGT
GATCGAGGAGGGTGAG
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