mRNA_P-wetherbeei_contig5193.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5193.1.1
Unique NamemRNA_P-wetherbeei_contig5193.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: A0A1B6BZ14_9HEMI (RING-type E3 ubiquitin transferase n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6BZ14_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 3.870e-6
Identity = 19/46 (41.30%), Postives = 33/46 (71.74%), Query Frame = 2 
Query: 1220 CVVCMDARRNAVIMPCSHLCVCSPCCDLLSNGLCPVCRQKYTSFIK 1357
            CV+C+D++R+ +++PC H C+CSPC +   N  CP+CRQ +   ++
Sbjct:  292 CVICLDSKRDVILLPCRHFCMCSPCSEKFDNNNCPICRQIFNEKLQ 337
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: A0A6B2LQ64_9EUKA (RING-type E3 ubiquitin transferase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQ64_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 5.830e-6
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 2 
Query: 1193 ERPVDDADICVVCMDARRNAVIMPCSHLCVCSPCCDLLSNG---LCPVCRQKYTSFIK 1357
            E+  ++   CV+C+D +R  V++PC HLC+CS C    S     +CPVCR  +T+  K
Sbjct:   28 EQDQENKSYCVICLDEKREHVLVPCGHLCICSSCSGPFSKTQPHICPVCRAPFTATYK 85
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: A0A7S2B8J1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B8J1_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-5
Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 2 
Query: 1190 GERP---VDDADICVVCMDARRNAVIMPCSHLCVCSPCCDLLSNGLCPVCRQKYTSFIK 1357
            GE P     D D CVVCMDA +  + +PC HLCVC  C    +   CP+CR   +  I+
Sbjct:   45 GEAPSATTPDGDTCVVCMDASKTHIYVPCGHLCVCESC-STTTGSRCPICRDSSSMVIR 102
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: A0A7S4L522_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L522_GUITH)

HSP 1 Score: 58.5 bits (140), Expect = 1.780e-5
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 2 
Query: 1187 SGERPVDDAD-ICVVCMDARRNAVIMPCSHLCVCSPCCDLLSNGLCPVCRQKYTSFIK 1357
            S  +  DD + +C+VC  A R+AV +PC+H  +C  C   LS G CPVCRQ ++S ++
Sbjct:  299 SSNQDCDDWEQVCIVCCQAARDAVFLPCAHQVLCYRCSSALSRGSCPVCRQNFSSILR 356
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: A0A7S2JNJ9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JNJ9_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.520e-5
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 2 
Query: 1208 DAD-ICVVCMDARRNAVIMPCSHLCVCSPCCDLLSNGLCPVCRQKYTSFIKNIH 1366
            DAD +CV+C+DA+R+ V +PC H C C  C    +NG CP+CRQ     IK IH
Sbjct:  114 DADSLCVICIDAKRSHVFIPCGHFCCCEGCIPK-ANGACPMCRQS----IKEIH 162
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: A0A7S2VTW6_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VTW6_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 7.790e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 2 
Query: 1220 CVVCMDARRNAVIMPCSHLCVCSPCCDLLSNGLCPVCRQKYTSFIK 1357
            CVVC++A R  +++PC H+C C  C D L    CP+CR K T+F K
Sbjct:  115 CVVCLEAPREILLLPCRHVCCCRACADRLDT--CPICRAKKTAFAK 158
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BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Match: UPI001BB1EB47 (uncharacterized protein LOC121428732 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1EB47)

HSP 1 Score: 57.0 bits (136), Expect = 8.000e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 2 
Query: 1220 CVVCMDARRNAVIMPCSHLCVCSPCCD-LLSNG-----LCPVCRQKYTSFIK 1357
            CVVC+DA +N + MPC HLCVC PC D ++SN      +CP+CR +  S ++
Sbjct:  450 CVVCLDAVKNTLFMPCRHLCVCVPCADRIVSNDDIYMRICPLCRSRIGSIVE 501
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5193.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1B6BZ14_9HEMI3.870e-641.30RING-type E3 ubiquitin transferase n=1 Tax=Clastop... [more]
A0A6B2LQ64_9EUKA5.830e-639.66RING-type E3 ubiquitin transferase n=1 Tax=Arcella... [more]
A0A7S2B8J1_9EUKA1.230e-542.37Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4L522_GUITH1.780e-543.10Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S2JNJ9_9EUKA2.520e-550.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2VTW6_9DINO7.790e-547.83Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
UPI001BB1EB478.000e-548.08uncharacterized protein LOC121428732 n=1 Tax=Lytec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5193contigP-wetherbeei_contig5193:1115..3000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3694.POPTR_0014s13410.1
PFAMsGIDE,zf-C3HC4_3
Model size1886
Max annot lvl35493|Streptophyta
KEGG koko:K15688
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-07
EggNOG OGsKOG1571@1|root,KOG1571@2759|Eukaryota,37PJN@33090|Viridiplantae,3G7MF@35493|Streptophyta,4JGQX@91835|fabids
EC2.3.2.27
DescriptionMitochondrial ubiquitin ligase activator of NFKB
Cds size1170
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.0777538-UTR-P-wetherbeei_contig5193:1114..16281683186779.0777538-UTR-P-wetherbeei_contig5193:1114..1628Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5193 1115..1628 -
1683186779.0967643-UTR-P-wetherbeei_contig5193:2798..30001683186779.0967643-UTR-P-wetherbeei_contig5193:2798..3000Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5193 2799..3000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.0883203-CDS-P-wetherbeei_contig5193:1628..27981683186779.0883203-CDS-P-wetherbeei_contig5193:1628..2798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5193 1629..2798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5193.1.1prot_P-wetherbeei_contig5193.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5193 1629..2798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5193.1.1

>prot_P-wetherbeei_contig5193.1.1 ID=prot_P-wetherbeei_contig5193.1.1|Name=mRNA_P-wetherbeei_contig5193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=390bp
MIEMLHGRRPLPAPAAALLPPPATPPAPEPAYPAATTPPPLHYPYGYAEP
ELEKSSFEAITAGFGRGGGSSRIPFTAMGRLADGAGGGAFAQVPGLDGGT
FSLGPTISGGGSGAPSGITGAGATPGNTGAASTVSGNHGGSPGGGLFGSN
PFANIEGFDFLGGGGGSSSSGGGRFAKATAIFSASVPDTLATVGGGTFAG
IGCGGGNVAFAGSGNGGGGGGSGDAVVVDDLESFLTELGLSDYAAAFAEH
GWDLDGVMDADVESDFEEIGLLKGHQVRLRNGLESCRQQMQQAQAERREQ
EAAAAAAAAAAAGALAGAGGAGGAGGDRSGERPVDDADICVVCMDARRNA
VIMPCSHLCVCSPCCDLLSNGLCPVCRQKYTSFIKNIHS*
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mRNA from alignment at P-wetherbeei_contig5193:1115..3000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5193.1.1 ID=mRNA_P-wetherbeei_contig5193.1.1|Name=mRNA_P-wetherbeei_contig5193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1886bp|location=Sequence derived from alignment at P-wetherbeei_contig5193:1115..3000- (Phaeothamnion wetherbeei SAG_119_79)
GGGTGCCGCGGCTGTCTCTTCTGCTGCGGCGGCGCCGATCGAGGCCGCTC
GGCGCCGCGAACGCACCGTTTCCGTCGGCATTGGCGGCGGCAGCGCAGCT
GCCGCCGCGCCGGAGCCTCGCAGCCAACTGTCGCCGCCACCATCGGCGCA
GCCGCTGCCGGCGCCGCTGGGCTGGGGAGACCCGTCTGGTGACACCAATC
GGATGATCGAAATGCTGCATGGGAGGCGGCCGCTGCCTGCACCGGCTGCG
GCACTGCTGCCGCCGCCGGCTACCCCGCCGGCCCCGGAACCCGCGTACCC
GGCGGCGACGACGCCACCGCCGCTGCACTATCCCTACGGGTACGCCGAAC
CTGAACTGGAAAAGTCATCTTTCGAAGCGATTACTGCAGGGTTTGGCAGA
GGAGGTGGCAGCTCAAGGATCCCCTTTACCGCGATGGGCAGGCTGGCTGA
CGGCGCAGGCGGCGGCGCCTTTGCGCAGGTGCCCGGACTCGACGGCGGAA
CTTTTTCGCTCGGTCCCACGATCAGCGGCGGCGGTAGCGGTGCCCCATCT
GGTATCACAGGCGCCGGCGCCACACCCGGTAACACAGGCGCCGCCAGCAC
AGTCAGCGGCAATCATGGCGGAAGCCCCGGGGGCGGGCTCTTTGGAAGCA
ACCCCTTCGCCAACATTGAAGGCTTTGACTTTCTGGGAGGCGGCGGCGGC
TCCAGCAGCAGCGGTGGCGGCCGCTTTGCGAAAGCGACCGCTATCTTCAG
CGCCAGCGTGCCGGACACTCTGGCTACTGTCGGTGGCGGCACCTTTGCGG
GCATAGGTTGCGGCGGCGGCAACGTTGCCTTCGCTGGCAGCGGGAACGGC
GGCGGCGGCGGCGGCAGCGGCGATGCCGTCGTTGTTGATGACTTGGAGAG
CTTCCTGACGGAGCTCGGCCTCAGCGACTACGCCGCGGCCTTCGCAGAGC
ACGGCTGGGACCTCGACGGCGTGATGGACGCCGACGTAGAGTCCGACTTC
GAGGAGATCGGCCTGCTGAAGGGCCACCAGGTGCGGCTGCGTAACGGTCT
TGAAAGCTGTAGGCAGCAGATGCAGCAGGCGCAGGCGGAGCGGCGGGAGC
AGGAGGCCGCGGCGGCTGCGGCTGCCGCGGCTGCGGCGGGAGCTCTAGCC
GGTGCAGGCGGCGCGGGTGGGGCTGGCGGCGACCGCAGCGGCGAACGCCC
TGTAGACGATGCAGACATCTGCGTTGTCTGTATGGACGCGCGCCGCAACG
CCGTCATCATGCCCTGCTCCCACCTCTGTGTCTGCTCGCCGTGTTGCGAT
CTACTGAGCAATGGGCTGTGCCCAGTCTGCCGGCAAAAGTACACAAGCTT
CATCAAAAATATCCACAGCTAAATTGCCACACCACAATGCAGAACGGTTG
AAGACGACTGTAGCACGGTTATCAGCAGCGGTAGTGACGGCGGTGCGCAG
GATAATGACAGCAATAGTTAGCGGTGGCGGCCACGGCGGGGCTGTCGGCG
GCATGTTATTGCCCTTATAAGTGCTTGTCCTTCGTCGATTCGGGAATAAA
GAGCTGCAGAGGAGCGATCATCACATTCAGCTAGCGATTACAGGACACAG
CGGACGCCATGATAGGGCCACCAGCTGGAGAAAATGGGTTTTAAGTGCCG
TGGGAGCGAATCCGGCTAGTTCCCATCGGAAGATGCGGGAGCTGATTGAA
ACGGGCGGGGGTGACTCGGGCCGGTAGGGGGCGACGGCTGAAATGGCATA
CCTGTTGCTACGCCTCCAGGGGTTGGGATGGTAGGACAGAGAGCCATTGC
CTATCTGCCGAATGAGAAGAAAACATGCCAGTCTTTTCGAGGTAGCTTGC
CAGAAACCCCCAAGCTGAAGGCTGGCCGCGCCTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5193:1115..3000-

>mRNA_P-wetherbeei_contig5193.1.1 ID=mRNA_P-wetherbeei_contig5193.1.1|Name=mRNA_P-wetherbeei_contig5193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig5193:1115..3000- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGAAATGCTGCATGGGAGGCGGCCGCTGCCTGCACCGGCTGCGGC
ACTGCTGCCGCCGCCGGCTACCCCGCCGGCCCCGGAACCCGCGTACCCGG
CGGCGACGACGCCACCGCCGCTGCACTATCCCTACGGGTACGCCGAACCT
GAACTGGAAAAGTCATCTTTCGAAGCGATTACTGCAGGGTTTGGCAGAGG
AGGTGGCAGCTCAAGGATCCCCTTTACCGCGATGGGCAGGCTGGCTGACG
GCGCAGGCGGCGGCGCCTTTGCGCAGGTGCCCGGACTCGACGGCGGAACT
TTTTCGCTCGGTCCCACGATCAGCGGCGGCGGTAGCGGTGCCCCATCTGG
TATCACAGGCGCCGGCGCCACACCCGGTAACACAGGCGCCGCCAGCACAG
TCAGCGGCAATCATGGCGGAAGCCCCGGGGGCGGGCTCTTTGGAAGCAAC
CCCTTCGCCAACATTGAAGGCTTTGACTTTCTGGGAGGCGGCGGCGGCTC
CAGCAGCAGCGGTGGCGGCCGCTTTGCGAAAGCGACCGCTATCTTCAGCG
CCAGCGTGCCGGACACTCTGGCTACTGTCGGTGGCGGCACCTTTGCGGGC
ATAGGTTGCGGCGGCGGCAACGTTGCCTTCGCTGGCAGCGGGAACGGCGG
CGGCGGCGGCGGCAGCGGCGATGCCGTCGTTGTTGATGACTTGGAGAGCT
TCCTGACGGAGCTCGGCCTCAGCGACTACGCCGCGGCCTTCGCAGAGCAC
GGCTGGGACCTCGACGGCGTGATGGACGCCGACGTAGAGTCCGACTTCGA
GGAGATCGGCCTGCTGAAGGGCCACCAGGTGCGGCTGCGTAACGGTCTTG
AAAGCTGTAGGCAGCAGATGCAGCAGGCGCAGGCGGAGCGGCGGGAGCAG
GAGGCCGCGGCGGCTGCGGCTGCCGCGGCTGCGGCGGGAGCTCTAGCCGG
TGCAGGCGGCGCGGGTGGGGCTGGCGGCGACCGCAGCGGCGAACGCCCTG
TAGACGATGCAGACATCTGCGTTGTCTGTATGGACGCGCGCCGCAACGCC
GTCATCATGCCCTGCTCCCACCTCTGTGTCTGCTCGCCGTGTTGCGATCT
ACTGAGCAATGGGCTGTGCCCAGTCTGCCGGCAAAAGTACACAAGCTTCA
TCAAAAATATCCACAGCTAA
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