mRNA_P-wetherbeei_contig5185.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5185.1.1
Unique NamemRNA_P-wetherbeei_contig5185.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A836C9X5_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.410e-45
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRG 279
            LPLSLL+TAQ HPMLVELKNGDTYNGRL++CD WMNIK+RDVIWTSRDG+RFWKLPE+YVRG SIKY+T+P+EV++MV EE+  + + +  G
Sbjct:    2 LPLSLLRTAQSHPMLVELKNGDTYNGRLDMCDNWMNIKLRDVIWTSRDGDRFWKLPEVYVRGTSIKYMTIPDEVLEMVVEEEEGKEKRAAAG 93
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.880e-44
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAAR 258
            LPLSLLKTAQGHPMLVELKNGDTYNGRL  CD WMNI +RDVI TSRDG+RFWK+PE YVRGNSIKY+ VPEEVIDMV EED  R
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLER 86
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S2FS84_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS84_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.050e-43
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEED 249
            LPLSLL+TAQGHPMLVELKNGDTYNGRL  CD+WMNI +R+VI TSRDG+RFWKLPE Y+RGNSIKY+ +PE+VID+VQEED
Sbjct:   15 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEED 96
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S2E5C6_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E5C6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.470e-43
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEED 249
            LPLSLL+TAQGHPMLVELKNGDTYNGRL  CD+WMNI +R+VI TSRDG+RFWKLPE Y+RGNSIKY+ +PE+VID+VQEED
Sbjct:   16 LPLSLLRTAQGHPMLVELKNGDTYNGRLVNCDSWMNINLREVICTSRDGDRFWKLPECYIRGNSIKYLRIPEDVIDLVQEED 97
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.600e-42
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAAR-AQASTRG 279
            LPLSLLKTAQGHPMLVELKNGDTYNGRL  CD+WMNI +R+VI TSRDG+RFW+LPE Y+RGNSIKY+ +P+EVIDMV EE   +  + +TRG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAMQKEVRMATRG 94
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: D7G8J7_ECTSI (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 7.770e-42
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRG 279
            LPLSLLKTAQG PMLVELKNGDTYNGRL+ CD+WMNIK++DVI+TSRD ++F K+ E+YVRGNSIKYVT+PEEV+DMVQEED ++ + +  G
Sbjct:    2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEVLDMVQEEDLSKEKRAMGG 93
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: H3G5G4_PHYRM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G4_PHYRM)

HSP 1 Score: 143 bits (360), Expect = 6.050e-41
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAAR 258
            LPLSLLKTAQGHPMLVELKNGDTYNG L  CD WMN+ +R+VI TS+DG+RFWK+PE Y+RGN+IKY+ VP E++DMV EED  R
Sbjct:    1 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDLNR 85
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A6A3LNI3_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.430e-41
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEED-AARAQASTRG 279
            LPLSLLKTAQGHPMLVELKNGDTYNG L  CD WMN+ +R+VI TS+DG+RFWK+PE Y+RGN+IKY+ VP E++DMV EED + R + + RG
Sbjct:    2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEEDFSKRDRQANRG 94
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: C3ZIA6_BRAFL (U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZIA6_BRAFL)

HSP 1 Score: 142 bits (359), Expect = 1.100e-40
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRG 279
            LPLSLLKTAQ HPMLVELKNG+TYNG LE CD WMNIK+RDVI TSRDG+RFW++PE Y+RG++IKY+ +P+EVIDMV+E+  ++ +   +G
Sbjct:    2 LPLSLLKTAQNHPMLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPECYIRGSTIKYLRIPDEVIDMVKEDIVSKQRTKQQG 93
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BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Match: A0A7S0PUU0_9EUKA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PUU0_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 1.490e-40
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    4 LPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDGERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRGXXXXXXGPRGG 312
            LPLSLL+TAQGHPMLVELKNG+TYNG L  CD WMNI +R+VI TSRDG+RFW+LPE+ +RGN+IKY+ +PEEVIDMV EED ++++ +  G      G RGG
Sbjct:    2 LPLSLLRTAQGHPMLVELKNGETYNGHLVSCDNWMNISLREVICTSRDGDRFWRLPEVIIRGNNIKYLRIPEEVIDMVPEEDLSKSKVA--GGKGDSRGGRGG 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9X5_9STRA3.410e-4572.83U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=T... [more]
W7TE23_9STRA1.880e-4483.53U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
A0A7S2FS84_9STRA3.050e-4380.49U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2E5C6_9STRA5.470e-4380.49U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A7S2UV99_9STRA1.600e-4273.12U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
D7G8J7_ECTSI7.770e-4272.83U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=E... [more]
H3G5G4_PHYRM6.050e-4172.94U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
A0A6A3LNI3_9STRA6.430e-4168.82U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
C3ZIA6_BRAFL1.100e-4067.39U6 snRNA-associated Sm-like protein LSm4 n=3 Tax=B... [more]
A0A7S0PUU0_9EUKA1.490e-4065.05U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5185contigP-wetherbeei_contig5185:390..1464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8J7
Preferred nameLSM4
PFAMsLSM
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K03065,ko:K06883,ko:K12623
KEGG Pathwayko03018,ko03040,ko03050,ko05169,map03018,map03040,map03050,map05169
KEGG ModuleM00341,M00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042731,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097458,GO:0097525,GO:0097526,GO:0120025,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990234,GO:1990726,GO:1990904
Exons3
Evalue1.27e-42
EggNOG OGsKOG3293@1|root,KOG3293@2759|Eukaryota
Ec32 ortholog descriptionSm-like protein LSm4
Ec32 orthologEc-14_003260.1
DescriptionU6 snRNA binding
Cds size537
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.980505-CDS-P-wetherbeei_contig5185:389..6671683186777.980505-CDS-P-wetherbeei_contig5185:389..667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5185 390..667 -
1683186777.9929218-CDS-P-wetherbeei_contig5185:886..10011683186777.9929218-CDS-P-wetherbeei_contig5185:886..1001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5185 887..1001 -
1683186778.002412-CDS-P-wetherbeei_contig5185:1320..14641683186778.002412-CDS-P-wetherbeei_contig5185:1320..1464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5185 1321..1464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5185.1.1prot_P-wetherbeei_contig5185.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5185 390..1464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5185.1.1

>prot_P-wetherbeei_contig5185.1.1 ID=prot_P-wetherbeei_contig5185.1.1|Name=mRNA_P-wetherbeei_contig5185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
QLPLSLLKTAQGHPMLVELKNGDTYNGRLELCDAWMNIKMRDVIWTSRDG
ERFWKLPEIYVRGNSIKYVTVPEEVIDMVQEEDAARAQASTRGRGRGRGG
PRGGGNDRGRGGSRGGGPGGRGPQPGRGADRGGRSGGGARGGRGGGRMGA
GGRGRGDGGSRVDAGRGRGGGGGGGGPA*
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mRNA from alignment at P-wetherbeei_contig5185:390..1464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5185.1.1 ID=mRNA_P-wetherbeei_contig5185.1.1|Name=mRNA_P-wetherbeei_contig5185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1075bp|location=Sequence derived from alignment at P-wetherbeei_contig5185:390..1464- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGCCGCTGTCATTGCTGAAGACGGCACAGGGCCACCCTATGCTGGT
GGAGCTAAAGAATGGCGATACTTATAACGGGCGCCTCGAGCTCTGCGATG
CCTGGATGAACATCAAGATGCGGGACGTGATCTGGACGTCGCGGGTGCGG
TTGGCTCGCCTCGCATTGTCCTTTTTTGTGTTGCGCTCTTGAAGTGATTC
AGGTTGGAAACTACATCGAGACGCATCTCTTGCTGTCTTTTACGCCGACG
ATACTTTTTGGGCATCTGTGCCTGACAATCGCTGTTGCTCCTGATGGCCT
CTATCCTTGCGACTCGGTTGGTGGACGCAGTTGCTTGCAATCCTTGAAAT
GCGTTTCTCGCTTCAGGTTTCACACGATGCCAATCAATCAGCTTAGATCC
TTGTCTGATGCGATTTTACCTGAAGATCCATCTCCTTTCTCGAACCTTGG
TGACTGAGCGCAGGATGGCGAGCGATTCTGGAAGTTGCCGGAGATCTACG
TCCGCGGCAACAGCATCAAATACGTGACGGTGCCAGAGGAGGTCATCGAC
ATGGTGCAGGAGGAGGATGCCGCTAGAGGTGAGTGTCCCGTGGATGATCT
TTCGCATAACAAGCTTGTCGCGGCGTGATATCTCAAGTAATGCCCTTCAA
GCGGCTTCGTTAAAGTCCGCATGCAAAATCTCAGATAATCAGCGGCAGAG
CACTTTAAAATCTTGGATGAAGTGGCTCGTTTCGATGTACTACTTGAAAT
CCCCTTCTGTTTTCAATACATACTGAACCCCTCGCTTCCTTTGGCAGCAC
AAGCGTCGACGCGCGGGCGCGGACGCGGGCGCGGCGGGCCGCGGGGTGGC
GGTAACGACCGCGGGCGCGGAGGGTCCCGAGGGGGGGGCCCGGGTGGGCG
GGGACCGCAGCCAGGAAGGGGCGCCGACCGCGGCGGCCGCAGCGGCGGCG
GCGCGCGGGGCGGCCGCGGCGGGGGAAGAATGGGCGCGGGAGGCAGGGGT
AGGGGCGACGGCGGTAGCCGGGTTGATGCGGGCCGGGGACGCGGCGGCGG
CGGCGGCGGCGGCGGACCTGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5185:390..1464-

>mRNA_P-wetherbeei_contig5185.1.1 ID=mRNA_P-wetherbeei_contig5185.1.1|Name=mRNA_P-wetherbeei_contig5185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig5185:390..1464- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGCCGCTGTCATTGCTGAAGACGGCACAGGGCCACCCTATGCTGGT
GGAGCTAAAGAATGGCGATACTTATAACGGGCGCCTCGAGCTCTGCGATG
CCTGGATGAACATCAAGATGCGGGACGTGATCTGGACGTCGCGGGATGGC
GAGCGATTCTGGAAGTTGCCGGAGATCTACGTCCGCGGCAACAGCATCAA
ATACGTGACGGTGCCAGAGGAGGTCATCGACATGGTGCAGGAGGAGGATG
CCGCTAGAGCACAAGCGTCGACGCGCGGGCGCGGACGCGGGCGCGGCGGG
CCGCGGGGTGGCGGTAACGACCGCGGGCGCGGAGGGTCCCGAGGGGGGGG
CCCGGGTGGGCGGGGACCGCAGCCAGGAAGGGGCGCCGACCGCGGCGGCC
GCAGCGGCGGCGGCGCGCGGGGCGGCCGCGGCGGGGGAAGAATGGGCGCG
GGAGGCAGGGGTAGGGGCGACGGCGGTAGCCGGGTTGATGCGGGCCGGGG
ACGCGGCGGCGGCGGCGGCGGCGGCGGACCTGCTTGA
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